HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 11-MAY-10 3MYX TITLE CRYSTAL STRUCTURE OF A PSPTO_0244 (PROTEIN WITH UNKNOWN FUNCTION WHICH TITLE 2 BELONGS TO PFAM DUF861 FAMILY) FROM PSEUDOMONAS SYRINGAE PV. TOMATO TITLE 3 STR. DC3000 AT 1.30 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN PSPTO_0244; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. TOMATO; SOURCE 3 ORGANISM_COMMON: TBD; SOURCE 4 ORGANISM_TAXID: 223283; SOURCE 5 STRAIN: DC3000; SOURCE 6 GENE: PSPTO0244, PSPTO_0244; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PROTEIN OF UNKNOWN FUNCTION (DUF861), CUPIN_3 (PF05899), STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3MYX 1 REMARK SEQADV REVDAT 3 17-JUL-19 3MYX 1 REMARK LINK REVDAT 2 08-NOV-17 3MYX 1 REMARK REVDAT 1 09-JUN-10 3MYX 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PSPTO_0244 (PROTEIN WITH UNKNOWN JRNL TITL 2 FUNCTION WHICH BELONGS TO PFAM DUF861 FAMILY) FROM JRNL TITL 3 PSEUDOMONAS SYRINGAE PV. TOMATO STR. DC3000 AT 1.30 A JRNL TITL 4 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 101735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.119 REMARK 3 R VALUE (WORKING SET) : 0.117 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5084 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6082 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.1680 REMARK 3 BIN FREE R VALUE SET COUNT : 311 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3504 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 791 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.043 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.296 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4050 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2788 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5607 ; 1.495 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6881 ; 0.850 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 594 ; 7.071 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;30.822 ;22.911 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 678 ;11.871 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;17.832 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 673 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4614 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 816 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2557 ; 1.680 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1016 ; 0.971 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4243 ; 2.467 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1493 ; 2.916 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1299 ; 4.030 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6838 ; 1.224 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 832 ; 5.668 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6706 ; 2.739 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.CHLORIDE (CL) AND 1,2-ETHANEDIOL (EDO) FROM THE REMARK 3 CRYSTALLIZATION AND CRYOPROTECTANT SOLUTIONS HAVE BEEN MODELED. REMARK 3 4.ELECTRON DENSITY FOR RESIDUES A201-A203 WERE POOR AND THIS REMARK 3 REGION HAS BEEN MODELED BASED ON THE CORRESPONDING PORTION IN REMARK 3 CHAIN B. REMARK 4 REMARK 4 3MYX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97913,0.97879 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101752 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.759 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-MERGE, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NH4CL, 20.0000% PEG-3350, NO REMARK 280 BUFFER PH 6.3, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.19800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUPPORTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIC FORM IN SOLUTION. SIZE- REMARK 300 EXCLUSION CHROMATOGRAPHY COUPLED WITH STATIC LIGHT SCATTERING REMARK 300 SUGGEST A DIMER AS THE SIGNIFICANT OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 PRO B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 GLU A 43 CD OE1 OE2 REMARK 470 LYS A 184 CD CE NZ REMARK 470 ARG A 195 CZ NH1 NH2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 GLU B 43 CD OE1 OE2 REMARK 470 LYS B 184 CE NZ REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP B 142 O HOH A 274 2656 2.18 REMARK 500 O HOH A 440 O HOH B 293 2646 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 231 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -85.53 -143.23 REMARK 500 ASP B 33 -99.30 -133.27 REMARK 500 THR B 55 -154.70 -133.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 244 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 245 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 403325 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3MYX A 1 237 UNP Q88AY9 Q88AY9_PSESM 1 237 DBREF 3MYX B 1 237 UNP Q88AY9 Q88AY9_PSESM 1 237 SEQADV 3MYX GLY A 0 UNP Q88AY9 EXPRESSION TAG SEQADV 3MYX GLY B 0 UNP Q88AY9 EXPRESSION TAG SEQRES 1 A 238 GLY MSE PRO GLN PRO THR VAL LEU LEU LEU ALA ARG ALA SEQRES 2 A 238 ASP LEU SER PRO VAL GLY THR GLU PHE THR THR GLY PRO SEQRES 3 A 238 ILE ASP ALA HIS ASP PRO PHE ASP SER GLY ARG ARG THR SEQRES 4 A 238 ALA PHE VAL ASP GLU GLN GLY ILE ALA ALA GLY ILE VAL SEQRES 5 A 238 GLU PHE GLY THR ALA LEU SER VAL GLU ALA TYR PRO TYR SEQRES 6 A 238 THR GLU MSE LEU VAL MSE HIS ARG GLY SER VAL THR LEU SEQRES 7 A 238 THR SER GLY THR ASP SER VAL THR LEU SER THR GLY GLU SEQRES 8 A 238 SER ALA VAL ILE GLY ARG GLY THR GLN VAL ARG ILE ASP SEQRES 9 A 238 ALA GLN PRO GLU SER LEU TRP ALA PHE CYS ALA SER THR SEQRES 10 A 238 GLN ALA SER GLY PRO ASP LYS SER GLY ILE THR ALA LEU SEQRES 11 A 238 ASP ARG LEU ALA LEU LEU THR PRO SER SER PRO PRO ASP SEQRES 12 A 238 PRO SER ILE MSE ILE SER PRO LEU PRO GLN CYS ARG SER SEQRES 13 A 238 ASN ASN LEU PHE GLU ASP THR ALA SER THR LEU ARG ILE SEQRES 14 A 238 GLY VAL TRP ASP SER THR PRO TYR GLU ARG ILE SER ARG SEQRES 15 A 238 PRO HIS LYS ILE HIS GLU LEU MSE ASN LEU ILE GLU GLY SEQRES 16 A 238 ARG VAL VAL LEU SER LEU GLU ASN GLY SER SER LEU THR SEQRES 17 A 238 VAL ASN THR GLY ASP THR VAL PHE VAL ALA GLN GLY ALA SEQRES 18 A 238 PRO CYS LYS TRP THR SER THR GLY TYR VAL ARG LYS PHE SEQRES 19 A 238 TYR ALA VAL THR SEQRES 1 B 238 GLY MSE PRO GLN PRO THR VAL LEU LEU LEU ALA ARG ALA SEQRES 2 B 238 ASP LEU SER PRO VAL GLY THR GLU PHE THR THR GLY PRO SEQRES 3 B 238 ILE ASP ALA HIS ASP PRO PHE ASP SER GLY ARG ARG THR SEQRES 4 B 238 ALA PHE VAL ASP GLU GLN GLY ILE ALA ALA GLY ILE VAL SEQRES 5 B 238 GLU PHE GLY THR ALA LEU SER VAL GLU ALA TYR PRO TYR SEQRES 6 B 238 THR GLU MSE LEU VAL MSE HIS ARG GLY SER VAL THR LEU SEQRES 7 B 238 THR SER GLY THR ASP SER VAL THR LEU SER THR GLY GLU SEQRES 8 B 238 SER ALA VAL ILE GLY ARG GLY THR GLN VAL ARG ILE ASP SEQRES 9 B 238 ALA GLN PRO GLU SER LEU TRP ALA PHE CYS ALA SER THR SEQRES 10 B 238 GLN ALA SER GLY PRO ASP LYS SER GLY ILE THR ALA LEU SEQRES 11 B 238 ASP ARG LEU ALA LEU LEU THR PRO SER SER PRO PRO ASP SEQRES 12 B 238 PRO SER ILE MSE ILE SER PRO LEU PRO GLN CYS ARG SER SEQRES 13 B 238 ASN ASN LEU PHE GLU ASP THR ALA SER THR LEU ARG ILE SEQRES 14 B 238 GLY VAL TRP ASP SER THR PRO TYR GLU ARG ILE SER ARG SEQRES 15 B 238 PRO HIS LYS ILE HIS GLU LEU MSE ASN LEU ILE GLU GLY SEQRES 16 B 238 ARG VAL VAL LEU SER LEU GLU ASN GLY SER SER LEU THR SEQRES 17 B 238 VAL ASN THR GLY ASP THR VAL PHE VAL ALA GLN GLY ALA SEQRES 18 B 238 PRO CYS LYS TRP THR SER THR GLY TYR VAL ARG LYS PHE SEQRES 19 B 238 TYR ALA VAL THR MODRES 3MYX MSE A 67 MET SELENOMETHIONINE MODRES 3MYX MSE A 70 MET SELENOMETHIONINE MODRES 3MYX MSE A 146 MET SELENOMETHIONINE MODRES 3MYX MSE A 189 MET SELENOMETHIONINE MODRES 3MYX MSE B 67 MET SELENOMETHIONINE MODRES 3MYX MSE B 70 MET SELENOMETHIONINE MODRES 3MYX MSE B 146 MET SELENOMETHIONINE MODRES 3MYX MSE B 189 MET SELENOMETHIONINE HET MSE A 67 13 HET MSE A 70 13 HET MSE A 146 8 HET MSE A 189 13 HET MSE B 67 13 HET MSE B 70 13 HET MSE B 146 8 HET MSE B 189 13 HET CL A 238 1 HET EDO A 239 4 HET EDO A 240 4 HET EDO A 241 4 HET EDO A 242 4 HET CL B 238 1 HET EDO B 239 4 HET EDO B 240 4 HET EDO B 241 8 HET EDO B 242 4 HET EDO B 243 4 HET EDO B 244 4 HET EDO B 245 8 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 4 EDO 11(C2 H6 O2) FORMUL 16 HOH *791(H2 O) HELIX 1 1 ASP A 142 MSE A 146 5 5 HELIX 2 2 ASP B 142 MSE B 146 5 5 SHEET 1 A 7 VAL A 6 ALA A 10 0 SHEET 2 A 7 THR A 213 VAL A 216 -1 O PHE A 215 N LEU A 7 SHEET 3 A 7 GLU A 187 GLU A 193 -1 N GLU A 187 O VAL A 216 SHEET 4 A 7 VAL A 230 VAL A 236 -1 O PHE A 233 N ASN A 190 SHEET 5 A 7 ARG A 167 SER A 173 -1 N TRP A 171 O LYS A 232 SHEET 6 A 7 CYS A 153 GLU A 160 -1 N PHE A 159 O ILE A 168 SHEET 7 A 7 THR A 136 SER A 138 -1 N THR A 136 O SER A 155 SHEET 1 B 7 THR A 22 THR A 23 0 SHEET 2 B 7 ARG A 36 VAL A 41 -1 O THR A 38 N THR A 22 SHEET 3 B 7 ILE A 46 PHE A 53 -1 O ILE A 50 N ARG A 37 SHEET 4 B 7 SER A 108 SER A 115 -1 O TRP A 110 N VAL A 51 SHEET 5 B 7 THR A 65 ARG A 72 -1 N MSE A 67 O CYS A 113 SHEET 6 B 7 SER A 91 ILE A 94 -1 O ILE A 94 N GLU A 66 SHEET 7 B 7 ILE A 126 LEU A 129 -1 O THR A 127 N VAL A 93 SHEET 1 C 4 ALA A 56 VAL A 59 0 SHEET 2 C 4 VAL A 100 ALA A 104 -1 O VAL A 100 N VAL A 59 SHEET 3 C 4 SER A 74 SER A 79 -1 N THR A 78 O ARG A 101 SHEET 4 C 4 ASP A 82 SER A 87 -1 O VAL A 84 N LEU A 77 SHEET 1 D 3 TYR A 176 GLU A 177 0 SHEET 2 D 3 PRO A 221 SER A 226 -1 O SER A 226 N TYR A 176 SHEET 3 D 3 ARG A 181 PRO A 182 -1 N ARG A 181 O CYS A 222 SHEET 1 E 4 TYR A 176 GLU A 177 0 SHEET 2 E 4 PRO A 221 SER A 226 -1 O SER A 226 N TYR A 176 SHEET 3 E 4 VAL A 196 LEU A 200 -1 N VAL A 197 O THR A 225 SHEET 4 E 4 SER A 205 VAL A 208 -1 O VAL A 208 N VAL A 196 SHEET 1 F 7 VAL B 6 ALA B 10 0 SHEET 2 F 7 THR B 213 VAL B 216 -1 O PHE B 215 N LEU B 7 SHEET 3 F 7 GLU B 187 GLU B 193 -1 N GLU B 187 O VAL B 216 SHEET 4 F 7 VAL B 230 VAL B 236 -1 O ALA B 235 N LEU B 188 SHEET 5 F 7 ARG B 167 SER B 173 -1 N TRP B 171 O LYS B 232 SHEET 6 F 7 CYS B 153 GLU B 160 -1 N PHE B 159 O ILE B 168 SHEET 7 F 7 THR B 136 SER B 138 -1 N THR B 136 O SER B 155 SHEET 1 G 7 THR B 22 THR B 23 0 SHEET 2 G 7 ARG B 36 VAL B 41 -1 O THR B 38 N THR B 22 SHEET 3 G 7 ILE B 46 PHE B 53 -1 O ILE B 50 N ARG B 37 SHEET 4 G 7 SER B 108 SER B 115 -1 O TRP B 110 N VAL B 51 SHEET 5 G 7 THR B 65 ARG B 72 -1 N HIS B 71 O LEU B 109 SHEET 6 G 7 SER B 91 ILE B 94 -1 O ILE B 94 N GLU B 66 SHEET 7 G 7 ILE B 126 LEU B 129 -1 O THR B 127 N VAL B 93 SHEET 1 H 4 ALA B 56 VAL B 59 0 SHEET 2 H 4 VAL B 100 ALA B 104 -1 O ILE B 102 N LEU B 57 SHEET 3 H 4 SER B 74 SER B 79 -1 N THR B 78 O ARG B 101 SHEET 4 H 4 ASP B 82 SER B 87 -1 O VAL B 84 N LEU B 77 SHEET 1 I 4 ARG B 181 PRO B 182 0 SHEET 2 I 4 PRO B 221 THR B 225 -1 O CYS B 222 N ARG B 181 SHEET 3 I 4 VAL B 196 SER B 199 -1 N VAL B 197 O THR B 225 SHEET 4 I 4 SER B 205 VAL B 208 -1 O VAL B 208 N VAL B 196 LINK C GLU A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N LEU A 68 1555 1555 1.33 LINK C VAL A 69 N MSE A 70 1555 1555 1.33 LINK C MSE A 70 N HIS A 71 1555 1555 1.33 LINK C ILE A 145 N MSE A 146 1555 1555 1.32 LINK C MSE A 146 N ILE A 147 1555 1555 1.34 LINK C LEU A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N ASN A 190 1555 1555 1.32 LINK C GLU B 66 N MSE B 67 1555 1555 1.33 LINK C MSE B 67 N LEU B 68 1555 1555 1.34 LINK C VAL B 69 N MSE B 70 1555 1555 1.33 LINK C MSE B 70 N HIS B 71 1555 1555 1.33 LINK C ILE B 145 N MSE B 146 1555 1555 1.33 LINK C MSE B 146 N ILE B 147 1555 1555 1.33 LINK C LEU B 188 N MSE B 189 1555 1555 1.33 LINK C MSE B 189 N ASN B 190 1555 1555 1.32 SITE 1 AC1 5 ASP A 33 SER A 34 GLY A 35 HOH A 421 SITE 2 AC1 5 HOH A 473 SITE 1 AC2 5 SER A 79 GLY A 80 GLN A 99 ARG A 101 SITE 2 AC2 5 HOH A 254 SITE 1 AC3 4 GLN A 44 SER A 164 THR A 165 HOH A 458 SITE 1 AC4 6 PRO A 141 TRP A 171 HOH A 351 HOH A 380 SITE 2 AC4 6 HOH A 563 HOH A 756 SITE 1 AC5 6 PRO A 175 THR A 227 HOH A 416 LEU B 132 SITE 2 AC5 6 EDO B 239 EDO B 240 SITE 1 AC6 2 ASP B 33 GLY B 35 SITE 1 AC7 6 EDO A 242 ARG B 131 LEU B 132 EDO B 240 SITE 2 AC7 6 HOH B 359 HOH B 442 SITE 1 AC8 7 THR A 227 EDO A 242 ARG B 131 EDO B 239 SITE 2 AC8 7 EDO B 241 HOH B 348 HOH B 393 SITE 1 AC9 7 THR A 227 GLY A 228 HOH A 347 HOH A 720 SITE 2 AC9 7 GLU B 193 EDO B 240 HOH B 417 SITE 1 BC1 7 SER B 139 PRO B 140 PRO B 141 TRP B 171 SITE 2 BC1 7 TYR B 176 EDO B 245 HOH B 719 SITE 1 BC2 6 THR B 78 SER B 79 GLY B 80 GLN B 99 SITE 2 BC2 6 ARG B 101 HOH B 255 SITE 1 BC3 6 GLU B 20 PHE B 21 THR B 22 THR B 38 SITE 2 BC3 6 ALA B 39 HOH B 360 SITE 1 BC4 10 SER B 155 ARG B 167 TRP B 171 GLU B 187 SITE 2 BC4 10 LYS B 232 TYR B 234 EDO B 242 HOH B 337 SITE 3 BC4 10 HOH B 421 HOH B 624 CRYST1 57.584 48.396 80.454 90.00 108.21 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017366 0.000000 0.005713 0.00000 SCALE2 0.000000 0.020663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013085 0.00000