HEADER TRANSFERASE 13-MAY-10 3MZV TITLE CRYSTAL STRUCTURE OF A DECAPRENYL DIPHOSPHATE SYNTHASE FROM TITLE 2 RHODOBACTER CAPSULATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DECAPRENYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS; SOURCE 3 ORGANISM_TAXID: 1061; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS TRANSFERASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR C.E.QUARTARARO,Y.PATSKOVSKY,J.B.BONANNO,M.RUTTER,K.T.BAIN,S.CHANG, AUTHOR 2 R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER AUTHOR 3 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 8 21-FEB-24 3MZV 1 REMARK REVDAT 7 10-FEB-21 3MZV 1 AUTHOR SEQADV REVDAT 6 21-NOV-18 3MZV 1 AUTHOR REVDAT 5 08-NOV-17 3MZV 1 REMARK REVDAT 4 24-APR-13 3MZV 1 JRNL REVDAT 3 27-MAR-13 3MZV 1 JRNL REVDAT 2 13-MAR-13 3MZV 1 JRNL VERSN REVDAT 1 09-JUN-10 3MZV 0 JRNL AUTH F.H.WALLRAPP,J.J.PAN,G.RAMAMOORTHY,D.E.ALMONACID, JRNL AUTH 2 B.S.HILLERICH,R.SEIDEL,Y.PATSKOVSKY,P.C.BABBITT,S.C.ALMO, JRNL AUTH 3 M.P.JACOBSON,C.D.POULTER JRNL TITL PREDICTION OF FUNCTION FOR THE POLYPRENYL TRANSFERASE JRNL TITL 2 SUBGROUP IN THE ISOPRENOID SYNTHASE SUPERFAMILY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 E1196 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23493556 JRNL DOI 10.1073/PNAS.1300632110 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 56071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2837 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3903 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 179 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4795 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.90000 REMARK 3 B22 (A**2) : 1.90000 REMARK 3 B33 (A**2) : -1.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.89000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.480 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4893 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3209 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6645 ; 1.507 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7817 ; 1.012 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 636 ; 5.008 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 217 ;32.998 ;23.733 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 803 ;16.251 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;17.452 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 778 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5536 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 982 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3150 ; 0.924 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1297 ; 0.251 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5004 ; 1.609 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1743 ; 2.711 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1638 ; 4.082 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 332 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7740 53.6800 27.3750 REMARK 3 T TENSOR REMARK 3 T11: 0.1272 T22: 0.1359 REMARK 3 T33: 0.0925 T12: -0.0266 REMARK 3 T13: 0.0045 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.4109 L22: 0.7752 REMARK 3 L33: 1.8772 L12: 0.1685 REMARK 3 L13: 0.2091 L23: -0.1914 REMARK 3 S TENSOR REMARK 3 S11: 0.0649 S12: -0.4471 S13: -0.0737 REMARK 3 S21: 0.2410 S22: -0.0261 S23: -0.1244 REMARK 3 S31: -0.0512 S32: 0.0249 S33: -0.0389 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 334 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6860 82.7950 9.3680 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.0498 REMARK 3 T33: 0.0914 T12: -0.0318 REMARK 3 T13: 0.0133 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 2.0829 L22: 0.4464 REMARK 3 L33: 0.0864 L12: 0.7935 REMARK 3 L13: -0.3164 L23: -0.1774 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.1231 S13: 0.1063 REMARK 3 S21: 0.0959 S22: -0.0205 S23: -0.0035 REMARK 3 S31: -0.0379 S32: 0.0153 S33: 0.0121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3MZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059202. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56604 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47900 REMARK 200 R SYM FOR SHELL (I) : 0.47900 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES PH 6.5, 30% PEG MME 5K, REMARK 280 200MM AMMONIUM SULFATE, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.72950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.12250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.72950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.12250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 ASP A 5 REMARK 465 LYS A 6 REMARK 465 ALA A 7 REMARK 465 THR A 8 REMARK 465 VAL A 96 REMARK 465 ASP A 97 REMARK 465 GLU A 98 REMARK 465 SER A 99 REMARK 465 ARG A 100 REMARK 465 GLN A 101 REMARK 465 GLY A 226 REMARK 465 GLY A 227 REMARK 465 LYS A 228 REMARK 465 SER A 229 REMARK 465 ALA A 230 REMARK 465 GLU A 231 REMARK 465 ILE A 232 REMARK 465 GLY A 233 REMARK 465 LYS A 234 REMARK 465 ASN A 235 REMARK 465 GLU A 334 REMARK 465 GLY A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 ASP B 4 REMARK 465 ASP B 5 REMARK 465 LYS B 6 REMARK 465 ALA B 7 REMARK 465 THR B 8 REMARK 465 LYS B 9 REMARK 465 GLY B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 465 HIS B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 465 HIS B 341 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 GLU A 50 CG CD OE1 OE2 REMARK 470 ARG A 103 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 110 CG CD1 CD2 REMARK 470 ASP A 113 CG OD1 OD2 REMARK 470 GLN A 163 CG CD OE1 NE2 REMARK 470 GLU A 242 CG CD OE1 OE2 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 GLU A 330 CG CD OE1 OE2 REMARK 470 ARG B 30 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 100 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 103 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 105 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 110 CG CD1 CD2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 LYS B 270 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 26 NH2 ARG B 55 2.09 REMARK 500 NE2 HIS B 11 O LYS B 54 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 132 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 MET A 132 CG - SD - CE ANGL. DEV. = 16.0 DEGREES REMARK 500 MET B 33 CG - SD - CE ANGL. DEV. = 13.3 DEGREES REMARK 500 ASP B 93 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 127 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 127 NE - CZ - NH2 ANGL. DEV. = 5.7 DEGREES REMARK 500 MET B 132 CA - CB - CG ANGL. DEV. = 10.4 DEGREES REMARK 500 MET B 132 CG - SD - CE ANGL. DEV. = -12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 112 -96.90 -105.36 REMARK 500 GLN A 163 29.80 47.92 REMARK 500 THR A 180 -52.43 -133.13 REMARK 500 ILE A 268 -62.08 -98.23 REMARK 500 ALA B 51 47.24 -99.29 REMARK 500 TRP B 112 -100.07 -114.45 REMARK 500 THR B 180 -51.08 -130.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-20011C RELATED DB: TARGETDB DBREF 3MZV A 1 333 UNP Q07D00 Q07D00_RHOCA 1 333 DBREF 3MZV B 1 333 UNP Q07D00 Q07D00_RHOCA 1 333 SEQADV 3MZV GLU A 334 UNP Q07D00 EXPRESSION TAG SEQADV 3MZV GLY A 335 UNP Q07D00 EXPRESSION TAG SEQADV 3MZV HIS A 336 UNP Q07D00 EXPRESSION TAG SEQADV 3MZV HIS A 337 UNP Q07D00 EXPRESSION TAG SEQADV 3MZV HIS A 338 UNP Q07D00 EXPRESSION TAG SEQADV 3MZV HIS A 339 UNP Q07D00 EXPRESSION TAG SEQADV 3MZV HIS A 340 UNP Q07D00 EXPRESSION TAG SEQADV 3MZV HIS A 341 UNP Q07D00 EXPRESSION TAG SEQADV 3MZV GLU B 334 UNP Q07D00 EXPRESSION TAG SEQADV 3MZV GLY B 335 UNP Q07D00 EXPRESSION TAG SEQADV 3MZV HIS B 336 UNP Q07D00 EXPRESSION TAG SEQADV 3MZV HIS B 337 UNP Q07D00 EXPRESSION TAG SEQADV 3MZV HIS B 338 UNP Q07D00 EXPRESSION TAG SEQADV 3MZV HIS B 339 UNP Q07D00 EXPRESSION TAG SEQADV 3MZV HIS B 340 UNP Q07D00 EXPRESSION TAG SEQADV 3MZV HIS B 341 UNP Q07D00 EXPRESSION TAG SEQRES 1 A 341 MET SER LEU ASP ASP LYS ALA THR LYS PRO HIS ASP ARG SEQRES 2 A 341 LEU ALA GLN ALA LEU ALA GLU ASP MET ALA ALA VAL ASN SEQRES 3 A 341 ALA LEU ILE ARG GLU ARG MET SER SER GLU HIS ALA PRO SEQRES 4 A 341 ARG ILE PRO GLU VAL THR ALA HIS LEU ILE GLU ALA GLY SEQRES 5 A 341 GLY LYS ARG LEU ARG PRO MET LEU THR LEU ALA ALA ALA SEQRES 6 A 341 ARG LEU VAL GLY TYR GLY GLY PRO PHE HIS VAL HIS LEU SEQRES 7 A 341 ALA ALA THR VAL GLU PHE ILE HIS THR ALA THR LEU LEU SEQRES 8 A 341 HIS ASP ASP VAL VAL ASP GLU SER ARG GLN ARG ARG GLY SEQRES 9 A 341 ARG PRO THR ALA ASN LEU LEU TRP ASP ASN LYS SER SER SEQRES 10 A 341 VAL LEU VAL GLY ASP TYR LEU PHE ALA ARG SER PHE GLN SEQRES 11 A 341 LEU MET THR ASP THR GLY ASN MET ARG VAL MET GLU ILE SEQRES 12 A 341 LEU ALA ASN ALA SER ALA VAL ILE ALA GLU GLY GLU VAL SEQRES 13 A 341 LEU GLN LEU THR ALA ALA GLN ASN LEU ALA THR THR GLU SEQRES 14 A 341 ASP ILE TYR LEU ARG VAL ILE ARG GLY LYS THR ALA ALA SEQRES 15 A 341 LEU PHE SER ALA ALA THR GLU VAL GLY GLY ILE ILE GLY SEQRES 16 A 341 GLY ALA PRO GLU ASP GLN VAL GLN ALA LEU PHE ASP TYR SEQRES 17 A 341 GLY ASP ALA LEU GLY ILE ALA PHE GLN ILE VAL ASP ASP SEQRES 18 A 341 LEU LEU ASP TYR GLY GLY LYS SER ALA GLU ILE GLY LYS SEQRES 19 A 341 ASN THR GLY ASP ASP PHE ARG GLU ARG LYS LEU THR MET SEQRES 20 A 341 PRO VAL ILE LYS ALA VAL ALA LEU ALA ASP GLU ALA GLU SEQRES 21 A 341 ARG ALA PHE TRP LYS ARG VAL ILE GLU LYS GLY ASP GLN SEQRES 22 A 341 GLN ASP GLY ASP LEU GLU HIS ALA MET ALA LEU MET THR SEQRES 23 A 341 LYS HIS GLY THR LEU GLU ALA THR ARG LEU ALA ALA ILE SEQRES 24 A 341 GLY TRP THR ASP THR ALA ARG LYS ALA LEU ALA LYS LEU SEQRES 25 A 341 PRO ASP HIS PRO LEU ARG GLN MET LEU ASP ASP LEU ALA SEQRES 26 A 341 ASP TYR VAL VAL GLU ARG VAL ARG GLU GLY HIS HIS HIS SEQRES 27 A 341 HIS HIS HIS SEQRES 1 B 341 MET SER LEU ASP ASP LYS ALA THR LYS PRO HIS ASP ARG SEQRES 2 B 341 LEU ALA GLN ALA LEU ALA GLU ASP MET ALA ALA VAL ASN SEQRES 3 B 341 ALA LEU ILE ARG GLU ARG MET SER SER GLU HIS ALA PRO SEQRES 4 B 341 ARG ILE PRO GLU VAL THR ALA HIS LEU ILE GLU ALA GLY SEQRES 5 B 341 GLY LYS ARG LEU ARG PRO MET LEU THR LEU ALA ALA ALA SEQRES 6 B 341 ARG LEU VAL GLY TYR GLY GLY PRO PHE HIS VAL HIS LEU SEQRES 7 B 341 ALA ALA THR VAL GLU PHE ILE HIS THR ALA THR LEU LEU SEQRES 8 B 341 HIS ASP ASP VAL VAL ASP GLU SER ARG GLN ARG ARG GLY SEQRES 9 B 341 ARG PRO THR ALA ASN LEU LEU TRP ASP ASN LYS SER SER SEQRES 10 B 341 VAL LEU VAL GLY ASP TYR LEU PHE ALA ARG SER PHE GLN SEQRES 11 B 341 LEU MET THR ASP THR GLY ASN MET ARG VAL MET GLU ILE SEQRES 12 B 341 LEU ALA ASN ALA SER ALA VAL ILE ALA GLU GLY GLU VAL SEQRES 13 B 341 LEU GLN LEU THR ALA ALA GLN ASN LEU ALA THR THR GLU SEQRES 14 B 341 ASP ILE TYR LEU ARG VAL ILE ARG GLY LYS THR ALA ALA SEQRES 15 B 341 LEU PHE SER ALA ALA THR GLU VAL GLY GLY ILE ILE GLY SEQRES 16 B 341 GLY ALA PRO GLU ASP GLN VAL GLN ALA LEU PHE ASP TYR SEQRES 17 B 341 GLY ASP ALA LEU GLY ILE ALA PHE GLN ILE VAL ASP ASP SEQRES 18 B 341 LEU LEU ASP TYR GLY GLY LYS SER ALA GLU ILE GLY LYS SEQRES 19 B 341 ASN THR GLY ASP ASP PHE ARG GLU ARG LYS LEU THR MET SEQRES 20 B 341 PRO VAL ILE LYS ALA VAL ALA LEU ALA ASP GLU ALA GLU SEQRES 21 B 341 ARG ALA PHE TRP LYS ARG VAL ILE GLU LYS GLY ASP GLN SEQRES 22 B 341 GLN ASP GLY ASP LEU GLU HIS ALA MET ALA LEU MET THR SEQRES 23 B 341 LYS HIS GLY THR LEU GLU ALA THR ARG LEU ALA ALA ILE SEQRES 24 B 341 GLY TRP THR ASP THR ALA ARG LYS ALA LEU ALA LYS LEU SEQRES 25 B 341 PRO ASP HIS PRO LEU ARG GLN MET LEU ASP ASP LEU ALA SEQRES 26 B 341 ASP TYR VAL VAL GLU ARG VAL ARG GLU GLY HIS HIS HIS SEQRES 27 B 341 HIS HIS HIS FORMUL 3 HOH *305(H2 O) HELIX 1 1 LYS A 9 LEU A 18 1 10 HELIX 2 2 LEU A 18 MET A 33 1 16 HELIX 3 3 PRO A 39 ALA A 51 1 13 HELIX 4 4 ARG A 55 VAL A 68 1 14 HELIX 5 5 PRO A 73 VAL A 95 1 23 HELIX 6 6 THR A 107 TRP A 112 1 6 HELIX 7 7 ASP A 113 THR A 133 1 21 HELIX 8 8 ASP A 134 GLY A 136 5 3 HELIX 9 9 ASN A 137 ALA A 162 1 26 HELIX 10 10 THR A 168 THR A 180 1 13 HELIX 11 11 THR A 180 GLY A 195 1 16 HELIX 12 12 PRO A 198 TYR A 225 1 28 HELIX 13 13 GLY A 237 GLU A 242 1 6 HELIX 14 14 THR A 246 LEU A 255 1 10 HELIX 15 15 ASP A 257 ILE A 268 1 12 HELIX 16 16 GLY A 276 HIS A 288 1 13 HELIX 17 17 GLY A 289 ALA A 310 1 22 HELIX 18 18 HIS A 315 VAL A 329 1 15 HELIX 19 19 GLU A 330 ARG A 333 5 4 HELIX 20 20 PRO B 10 LEU B 18 1 9 HELIX 21 21 LEU B 18 MET B 33 1 16 HELIX 22 22 PRO B 39 GLU B 50 1 12 HELIX 23 23 ARG B 55 VAL B 68 1 14 HELIX 24 24 PRO B 73 ASP B 97 1 25 HELIX 25 25 THR B 107 TRP B 112 1 6 HELIX 26 26 ASP B 113 ASP B 134 1 22 HELIX 27 27 ASN B 137 ALA B 162 1 26 HELIX 28 28 THR B 168 THR B 180 1 13 HELIX 29 29 THR B 180 GLY B 195 1 16 HELIX 30 30 PRO B 198 TYR B 225 1 28 HELIX 31 31 GLY B 237 GLU B 242 1 6 HELIX 32 32 THR B 246 LEU B 255 1 10 HELIX 33 33 ASP B 257 ILE B 268 1 12 HELIX 34 34 GLY B 276 HIS B 288 1 13 HELIX 35 35 GLY B 289 LEU B 309 1 21 HELIX 36 36 ALA B 310 LEU B 312 5 3 HELIX 37 37 HIS B 315 VAL B 329 1 15 HELIX 38 38 GLU B 330 ARG B 333 5 4 SHEET 1 A 2 GLN B 101 ARG B 102 0 SHEET 2 A 2 ARG B 105 PRO B 106 -1 O ARG B 105 N ARG B 102 CISPEP 1 GLY A 72 PRO A 73 0 7.60 CISPEP 2 GLY B 72 PRO B 73 0 5.69 CRYST1 123.459 90.245 80.167 90.00 125.76 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008100 0.000000 0.005833 0.00000 SCALE2 0.000000 0.011081 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015372 0.00000