HEADER LIGASE 13-MAY-10 3N05 TITLE CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM STREPTOMYCES TITLE 2 AVERMITILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NH(3)-DEPENDENT NAD(+) SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVERMITILIS; SOURCE 3 ORGANISM_TAXID: 33903; SOURCE 4 GENE: NADE, SAV5948, SAV_5948; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGASE, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 2 NYSGRC, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, NYSGXRC, KEYWDS 3 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,J.FREEMAN,J.DO,J.M.SAUDER,S.C.ALMO,S.K.BURLEY,NEW AUTHOR 2 YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 4 21-FEB-24 3N05 1 REMARK REVDAT 3 10-FEB-21 3N05 1 AUTHOR JRNL REMARK REVDAT 2 21-NOV-18 3N05 1 AUTHOR REVDAT 1 07-JUL-10 3N05 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,J.FREEMAN,J.DO,J.M.SAUDER,J.A.GERLT, JRNL AUTH 2 S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM JRNL TITL 2 STREPTOMYCES AVERMITILIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 54655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1734 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3076 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.3830 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8601 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 5.69000 REMARK 3 B33 (A**2) : -5.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.258 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.271 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.411 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8867 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12050 ; 1.168 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1147 ; 5.506 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 404 ;34.800 ;22.921 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1422 ;19.048 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 93 ;17.589 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1340 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6837 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5642 ; 2.658 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9001 ; 4.519 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3225 ; 6.474 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3040 ; 9.389 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3N05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58927 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES, PH 6.0, 20% PEG8K, 200MM REMARK 280 CALCIUM ACETATE MONOHYDRATE, 10% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.31400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.32150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.38550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.32150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.31400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.38550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 PRO A 491 REMARK 465 PRO A 492 REMARK 465 SER A 493 REMARK 465 ALA A 494 REMARK 465 GLU A 495 REMARK 465 LEU A 496 REMARK 465 ARG A 497 REMARK 465 PRO A 498 REMARK 465 GLY A 499 REMARK 465 GLN A 500 REMARK 465 VAL A 501 REMARK 465 ASP A 502 REMARK 465 THR A 503 REMARK 465 ASP A 504 REMARK 465 SER A 505 REMARK 465 LEU A 506 REMARK 465 HIS A 584 REMARK 465 HIS A 585 REMARK 465 HIS A 586 REMARK 465 HIS A 587 REMARK 465 HIS A 588 REMARK 465 MET B -1 REMARK 465 THR B 443 REMARK 465 LEU B 444 REMARK 465 TYR B 445 REMARK 465 GLY B 446 REMARK 465 ASP B 447 REMARK 465 PRO B 491 REMARK 465 PRO B 492 REMARK 465 SER B 493 REMARK 465 ALA B 494 REMARK 465 GLU B 495 REMARK 465 LEU B 496 REMARK 465 ARG B 497 REMARK 465 PRO B 498 REMARK 465 GLY B 499 REMARK 465 GLN B 500 REMARK 465 VAL B 501 REMARK 465 ASP B 502 REMARK 465 THR B 503 REMARK 465 ASP B 504 REMARK 465 SER B 505 REMARK 465 LEU B 506 REMARK 465 HIS B 584 REMARK 465 HIS B 585 REMARK 465 HIS B 586 REMARK 465 HIS B 587 REMARK 465 HIS B 588 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 52 -133.07 55.33 REMARK 500 PRO A 103 -153.54 -75.17 REMARK 500 ASP A 144 69.84 -115.87 REMARK 500 CYS A 161 -103.66 34.61 REMARK 500 ASP A 223 -127.44 54.78 REMARK 500 ARG A 236 -39.88 -36.57 REMARK 500 GLU A 264 79.40 -118.06 REMARK 500 VAL A 270 -143.27 -123.76 REMARK 500 LEU A 398 -45.30 -131.33 REMARK 500 LEU A 444 -10.02 78.64 REMARK 500 ASN A 577 113.11 -161.82 REMARK 500 GLU B 52 -124.94 52.97 REMARK 500 CYS B 161 -94.63 36.20 REMARK 500 ASP B 223 -126.83 58.07 REMARK 500 VAL B 270 -122.40 -111.84 REMARK 500 SER B 332 -165.24 -100.36 REMARK 500 SER B 360 -163.41 -107.38 REMARK 500 THR B 378 -52.39 -134.34 REMARK 500 ASN B 577 103.63 -165.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 589 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 590 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 591 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 589 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 590 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 591 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11242K RELATED DB: TARGETDB DBREF 3N05 A 2 581 UNP Q82AV7 Q82AV7_STRAW 3 582 DBREF 3N05 B 2 581 UNP Q82AV7 Q82AV7_STRAW 3 582 SEQADV 3N05 MET A -1 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 SER A 0 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 LEU A 1 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 GLY A 582 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 HIS A 583 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 HIS A 584 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 HIS A 585 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 HIS A 586 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 HIS A 587 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 HIS A 588 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 MET B -1 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 SER B 0 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 LEU B 1 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 GLY B 582 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 HIS B 583 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 HIS B 584 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 HIS B 585 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 HIS B 586 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 HIS B 587 UNP Q82AV7 EXPRESSION TAG SEQADV 3N05 HIS B 588 UNP Q82AV7 EXPRESSION TAG SEQRES 1 A 590 MET SER LEU GLN LEU ARG LEU ALA LEU ASN GLN ILE ASP SEQRES 2 A 590 SER THR VAL GLY ASP ILE ALA GLY ASN ALA GLU ALA ILE SEQRES 3 A 590 LEU ARG TRP THR ARG HIS SER ALA GLU GLN GLY ALA HIS SEQRES 4 A 590 LEU VAL ALA PHE PRO GLU MET ALA LEU THR GLY TYR PRO SEQRES 5 A 590 VAL GLU ASP LEU ALA LEU ARG SER SER PHE VAL GLU ALA SEQRES 6 A 590 SER ARG THR ALA LEU ARG GLU LEU ALA ALA ARG LEU ALA SEQRES 7 A 590 GLU GLU GLY PHE GLY GLU LEU PRO VAL LEU VAL GLY TYR SEQRES 8 A 590 LEU ASP ARG SER GLU SER ALA GLN PRO LYS TYR GLY GLN SEQRES 9 A 590 PRO ALA GLY ALA PRO ARG ASN ALA ALA ALA VAL LEU HIS SEQRES 10 A 590 ARG GLY ARG VAL ALA LEU THR PHE ALA LYS HIS HIS LEU SEQRES 11 A 590 PRO ASN TYR GLY VAL PHE ASP GLU PHE ARG TYR PHE VAL SEQRES 12 A 590 PRO GLY ASP THR MET PRO ILE VAL ARG LEU HIS GLY VAL SEQRES 13 A 590 ASP ILE ALA LEU ALA ILE CYS GLU ASP LEU TRP GLN ASP SEQRES 14 A 590 GLY GLY ARG VAL PRO ALA ALA ARG SER ALA GLY ALA GLY SEQRES 15 A 590 LEU LEU LEU SER VAL ASN ALA SER PRO TYR GLU ARG ASP SEQRES 16 A 590 LYS ASP ASP THR ARG LEU GLU LEU VAL ARG LYS ARG ALA SEQRES 17 A 590 GLN GLU ALA GLY CYS THR THR ALA TYR LEU ALA MET ILE SEQRES 18 A 590 GLY GLY GLN ASP GLU LEU VAL PHE ASP GLY ASP SER ILE SEQRES 19 A 590 VAL VAL ASP ARG ASP GLY GLU VAL VAL ALA ARG ALA PRO SEQRES 20 A 590 GLN PHE SER GLU GLY CYS VAL VAL LEU ASP LEU ASP LEU SEQRES 21 A 590 PRO ALA ALA GLU ALA GLU PRO PRO THR GLY VAL VAL ASP SEQRES 22 A 590 ASP GLY LEU ARG ILE ASP ARG LEU VAL ILE SER GLU GLU SEQRES 23 A 590 PRO LEU PRO ALA TYR GLU ALA GLU LEU ALA GLY GLY TYR SEQRES 24 A 590 ALA ASP ARG LEU ASP ALA ASP GLU GLU VAL TYR SER ALA SEQRES 25 A 590 LEU VAL VAL GLY LEU ARG ALA TYR VAL ALA LYS ASN GLY SEQRES 26 A 590 PHE ARG SER VAL LEU ILE GLY LEU SER GLY GLY ILE ASP SEQRES 27 A 590 SER ALA LEU VAL ALA ALA ILE ALA CYS ASP ALA LEU GLY SEQRES 28 A 590 ALA GLN ASN VAL TYR GLY VAL SER MET PRO SER LYS TYR SEQRES 29 A 590 SER SER ASP HIS SER LYS GLY ASP ALA ALA GLU LEU ALA SEQRES 30 A 590 ARG ARG THR GLY LEU ASN PHE ARG THR VAL SER ILE GLU SEQRES 31 A 590 PRO MET PHE ASP ALA TYR MET ALA SER LEU GLY LEU THR SEQRES 32 A 590 GLY LEU ALA GLU GLU ASN LEU GLN SER ARG LEU ARG GLY SEQRES 33 A 590 THR THR LEU MET ALA ILE SER ASN GLN GLU GLY HIS ILE SEQRES 34 A 590 VAL LEU ALA PRO GLY ASN LYS SER GLU LEU ALA VAL GLY SEQRES 35 A 590 TYR SER THR LEU TYR GLY ASP SER VAL GLY ALA TYR GLY SEQRES 36 A 590 PRO ILE LYS ASP VAL TYR LYS THR SER ILE PHE ARG LEU SEQRES 37 A 590 ALA GLU TRP ARG ASN ARG ALA ALA ALA GLU ARG GLY GLN SEQRES 38 A 590 THR PRO PRO ILE PRO GLU ALA SER ILE THR LYS PRO PRO SEQRES 39 A 590 SER ALA GLU LEU ARG PRO GLY GLN VAL ASP THR ASP SER SEQRES 40 A 590 LEU PRO ASP TYR PRO VAL LEU ASP ALA ILE LEU GLU LEU SEQRES 41 A 590 TYR VAL ASP ARG ASP THR GLY ALA ASP ALA ILE VAL ALA SEQRES 42 A 590 ALA GLY TYR ASP ARG GLU LEU VAL VAL LYS THR LEU ARG SEQRES 43 A 590 MET VAL ASP THR ALA GLU TYR LYS ARG ARG GLN TYR PRO SEQRES 44 A 590 PRO GLY THR LYS ILE SER ALA LYS GLY PHE GLY LYS ASP SEQRES 45 A 590 ARG ARG LEU PRO ILE THR ASN ARG TRP ARG GLU GLY HIS SEQRES 46 A 590 HIS HIS HIS HIS HIS SEQRES 1 B 590 MET SER LEU GLN LEU ARG LEU ALA LEU ASN GLN ILE ASP SEQRES 2 B 590 SER THR VAL GLY ASP ILE ALA GLY ASN ALA GLU ALA ILE SEQRES 3 B 590 LEU ARG TRP THR ARG HIS SER ALA GLU GLN GLY ALA HIS SEQRES 4 B 590 LEU VAL ALA PHE PRO GLU MET ALA LEU THR GLY TYR PRO SEQRES 5 B 590 VAL GLU ASP LEU ALA LEU ARG SER SER PHE VAL GLU ALA SEQRES 6 B 590 SER ARG THR ALA LEU ARG GLU LEU ALA ALA ARG LEU ALA SEQRES 7 B 590 GLU GLU GLY PHE GLY GLU LEU PRO VAL LEU VAL GLY TYR SEQRES 8 B 590 LEU ASP ARG SER GLU SER ALA GLN PRO LYS TYR GLY GLN SEQRES 9 B 590 PRO ALA GLY ALA PRO ARG ASN ALA ALA ALA VAL LEU HIS SEQRES 10 B 590 ARG GLY ARG VAL ALA LEU THR PHE ALA LYS HIS HIS LEU SEQRES 11 B 590 PRO ASN TYR GLY VAL PHE ASP GLU PHE ARG TYR PHE VAL SEQRES 12 B 590 PRO GLY ASP THR MET PRO ILE VAL ARG LEU HIS GLY VAL SEQRES 13 B 590 ASP ILE ALA LEU ALA ILE CYS GLU ASP LEU TRP GLN ASP SEQRES 14 B 590 GLY GLY ARG VAL PRO ALA ALA ARG SER ALA GLY ALA GLY SEQRES 15 B 590 LEU LEU LEU SER VAL ASN ALA SER PRO TYR GLU ARG ASP SEQRES 16 B 590 LYS ASP ASP THR ARG LEU GLU LEU VAL ARG LYS ARG ALA SEQRES 17 B 590 GLN GLU ALA GLY CYS THR THR ALA TYR LEU ALA MET ILE SEQRES 18 B 590 GLY GLY GLN ASP GLU LEU VAL PHE ASP GLY ASP SER ILE SEQRES 19 B 590 VAL VAL ASP ARG ASP GLY GLU VAL VAL ALA ARG ALA PRO SEQRES 20 B 590 GLN PHE SER GLU GLY CYS VAL VAL LEU ASP LEU ASP LEU SEQRES 21 B 590 PRO ALA ALA GLU ALA GLU PRO PRO THR GLY VAL VAL ASP SEQRES 22 B 590 ASP GLY LEU ARG ILE ASP ARG LEU VAL ILE SER GLU GLU SEQRES 23 B 590 PRO LEU PRO ALA TYR GLU ALA GLU LEU ALA GLY GLY TYR SEQRES 24 B 590 ALA ASP ARG LEU ASP ALA ASP GLU GLU VAL TYR SER ALA SEQRES 25 B 590 LEU VAL VAL GLY LEU ARG ALA TYR VAL ALA LYS ASN GLY SEQRES 26 B 590 PHE ARG SER VAL LEU ILE GLY LEU SER GLY GLY ILE ASP SEQRES 27 B 590 SER ALA LEU VAL ALA ALA ILE ALA CYS ASP ALA LEU GLY SEQRES 28 B 590 ALA GLN ASN VAL TYR GLY VAL SER MET PRO SER LYS TYR SEQRES 29 B 590 SER SER ASP HIS SER LYS GLY ASP ALA ALA GLU LEU ALA SEQRES 30 B 590 ARG ARG THR GLY LEU ASN PHE ARG THR VAL SER ILE GLU SEQRES 31 B 590 PRO MET PHE ASP ALA TYR MET ALA SER LEU GLY LEU THR SEQRES 32 B 590 GLY LEU ALA GLU GLU ASN LEU GLN SER ARG LEU ARG GLY SEQRES 33 B 590 THR THR LEU MET ALA ILE SER ASN GLN GLU GLY HIS ILE SEQRES 34 B 590 VAL LEU ALA PRO GLY ASN LYS SER GLU LEU ALA VAL GLY SEQRES 35 B 590 TYR SER THR LEU TYR GLY ASP SER VAL GLY ALA TYR GLY SEQRES 36 B 590 PRO ILE LYS ASP VAL TYR LYS THR SER ILE PHE ARG LEU SEQRES 37 B 590 ALA GLU TRP ARG ASN ARG ALA ALA ALA GLU ARG GLY GLN SEQRES 38 B 590 THR PRO PRO ILE PRO GLU ALA SER ILE THR LYS PRO PRO SEQRES 39 B 590 SER ALA GLU LEU ARG PRO GLY GLN VAL ASP THR ASP SER SEQRES 40 B 590 LEU PRO ASP TYR PRO VAL LEU ASP ALA ILE LEU GLU LEU SEQRES 41 B 590 TYR VAL ASP ARG ASP THR GLY ALA ASP ALA ILE VAL ALA SEQRES 42 B 590 ALA GLY TYR ASP ARG GLU LEU VAL VAL LYS THR LEU ARG SEQRES 43 B 590 MET VAL ASP THR ALA GLU TYR LYS ARG ARG GLN TYR PRO SEQRES 44 B 590 PRO GLY THR LYS ILE SER ALA LYS GLY PHE GLY LYS ASP SEQRES 45 B 590 ARG ARG LEU PRO ILE THR ASN ARG TRP ARG GLU GLY HIS SEQRES 46 B 590 HIS HIS HIS HIS HIS HET SO4 A 589 5 HET SO4 A 590 5 HET SO4 A 591 5 HET SO4 B 589 5 HET SO4 B 590 5 HET SO4 B 591 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 HOH *53(H2 O) HELIX 1 1 ASP A 16 GLU A 33 1 18 HELIX 2 2 VAL A 51 LEU A 56 5 6 HELIX 3 3 ARG A 57 GLU A 78 1 22 HELIX 4 4 ASP A 135 PHE A 140 1 6 HELIX 5 5 GLU A 162 GLN A 166 5 5 HELIX 6 6 GLY A 169 ALA A 177 1 9 HELIX 7 7 ASP A 196 GLY A 210 1 15 HELIX 8 8 ASP A 302 LYS A 321 1 20 HELIX 9 9 GLY A 334 GLY A 349 1 16 HELIX 10 10 SER A 364 GLY A 379 1 16 HELIX 11 11 ILE A 387 GLY A 399 1 13 HELIX 12 12 GLY A 402 GLY A 425 1 24 HELIX 13 13 ASN A 433 GLY A 440 1 8 HELIX 14 14 TYR A 459 ARG A 477 1 19 HELIX 15 15 PRO A 484 THR A 489 1 6 HELIX 16 16 ASP A 508 ASP A 521 1 14 HELIX 17 17 GLY A 525 ALA A 532 1 8 HELIX 18 18 ASP A 535 ALA A 549 1 15 HELIX 19 19 ALA A 549 GLN A 555 1 7 HELIX 20 20 ASP B 16 GLU B 33 1 18 HELIX 21 21 VAL B 51 LEU B 56 5 6 HELIX 22 22 ARG B 57 GLU B 78 1 22 HELIX 23 23 ASP B 135 PHE B 140 1 6 HELIX 24 24 GLU B 162 GLN B 166 5 5 HELIX 25 25 GLY B 169 SER B 176 1 8 HELIX 26 26 ASP B 196 GLY B 210 1 15 HELIX 27 27 ASP B 302 LYS B 321 1 20 HELIX 28 28 GLY B 334 GLY B 349 1 16 HELIX 29 29 SER B 364 ARG B 377 1 14 HELIX 30 30 ILE B 387 LEU B 398 1 12 HELIX 31 31 THR B 401 GLY B 425 1 25 HELIX 32 32 ASN B 433 GLY B 440 1 8 HELIX 33 33 TYR B 459 GLU B 476 1 18 HELIX 34 34 PRO B 484 THR B 489 1 6 HELIX 35 35 ASP B 508 VAL B 520 1 13 HELIX 36 36 GLY B 525 GLY B 533 1 9 HELIX 37 37 ASP B 535 ALA B 549 1 15 HELIX 38 38 ALA B 549 GLN B 555 1 7 SHEET 1 A 6 ARG A 118 ALA A 124 0 SHEET 2 A 6 PRO A 107 HIS A 115 -1 N VAL A 113 O ALA A 120 SHEET 3 A 6 VAL A 85 ARG A 92 -1 N VAL A 85 O LEU A 114 SHEET 4 A 6 LEU A 38 ALA A 40 1 N VAL A 39 O LEU A 86 SHEET 5 A 6 LEU A 1 GLN A 9 1 N ALA A 6 O LEU A 38 SHEET 6 A 6 GLY A 250 LEU A 258 -1 O LEU A 258 N LEU A 1 SHEET 1 B 7 VAL A 240 ARG A 243 0 SHEET 2 B 7 ILE A 232 VAL A 234 -1 N VAL A 233 O ALA A 242 SHEET 3 B 7 THR A 212 ALA A 217 -1 N TYR A 215 O ILE A 232 SHEET 4 B 7 LEU A 181 ASN A 186 1 N LEU A 182 O ALA A 214 SHEET 5 B 7 VAL A 154 ILE A 160 1 N ALA A 157 O LEU A 183 SHEET 6 B 7 THR A 145 LEU A 151 -1 N LEU A 151 O VAL A 154 SHEET 7 B 7 ARG A 275 VAL A 280 1 O ARG A 275 N MET A 146 SHEET 1 C 2 ILE A 219 GLN A 222 0 SHEET 2 C 2 LEU A 225 ASP A 228 -1 O PHE A 227 N GLY A 220 SHEET 1 D 4 ASN A 381 THR A 384 0 SHEET 2 D 4 VAL A 353 SER A 357 1 N SER A 357 O ARG A 383 SHEET 3 D 4 VAL A 327 GLY A 330 1 N ILE A 329 O TYR A 354 SHEET 4 D 4 ILE A 427 VAL A 428 1 O ILE A 427 N LEU A 328 SHEET 1 E 6 ARG B 118 ALA B 124 0 SHEET 2 E 6 PRO B 107 HIS B 115 -1 N ALA B 111 O PHE B 123 SHEET 3 E 6 VAL B 85 ARG B 92 -1 N ASP B 91 O ARG B 108 SHEET 4 E 6 LEU B 38 ALA B 40 1 N VAL B 39 O LEU B 86 SHEET 5 E 6 ARG B 4 GLN B 9 1 N ALA B 6 O LEU B 38 SHEET 6 E 6 GLY B 250 ASP B 255 -1 O VAL B 252 N LEU B 7 SHEET 1 F 7 VAL B 240 ARG B 243 0 SHEET 2 F 7 ILE B 232 VAL B 234 -1 N VAL B 233 O ALA B 242 SHEET 3 F 7 THR B 212 ALA B 217 -1 N THR B 213 O VAL B 234 SHEET 4 F 7 LEU B 181 ASN B 186 1 N SER B 184 O ALA B 214 SHEET 5 F 7 VAL B 154 ILE B 160 1 N ALA B 157 O LEU B 183 SHEET 6 F 7 THR B 145 LEU B 151 -1 N VAL B 149 O ILE B 156 SHEET 7 F 7 ARG B 275 VAL B 280 1 O LEU B 279 N ARG B 150 SHEET 1 G 2 ILE B 219 GLN B 222 0 SHEET 2 G 2 LEU B 225 ASP B 228 -1 O PHE B 227 N GLY B 220 SHEET 1 H 4 ASN B 381 THR B 384 0 SHEET 2 H 4 VAL B 353 SER B 357 1 N VAL B 353 O ASN B 381 SHEET 3 H 4 VAL B 327 LEU B 331 1 N LEU B 331 O VAL B 356 SHEET 4 H 4 ILE B 427 VAL B 428 1 O ILE B 427 N LEU B 328 CISPEP 1 TYR A 49 PRO A 50 0 -9.70 CISPEP 2 TYR B 49 PRO B 50 0 -6.49 SITE 1 AC1 5 SER A 188 THR A 197 ARG A 198 LEU A 201 SITE 2 AC1 5 TYR A 215 SITE 1 AC2 4 ARG A 65 LEU A 68 ARG A 69 ASP A 91 SITE 1 AC3 5 ARG A 4 GLY A 35 HIS A 37 TYR A 289 SITE 2 AC3 5 SER B 95 SITE 1 AC4 5 SER B 188 THR B 197 ARG B 198 LEU B 201 SITE 2 AC4 5 TYR B 215 SITE 1 AC5 6 ARG B 192 ALA B 303 ASP B 304 VAL B 307 SITE 2 AC5 6 SER B 462 ARG B 465 SITE 1 AC6 3 TRP B 469 ARG B 470 ARG B 477 CRYST1 100.628 108.771 126.643 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009938 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007896 0.00000