HEADER TRANSPORT PROTEIN 14-MAY-10 3N0X TITLE CRYSTAL STRUCTURE OF AN ABC-TYPE BRANCHED-CHAIN AMINO ACID TRANSPORTER TITLE 2 (RPA4397) FROM RHODOPSEUDOMONAS PALUSTRIS CGA009 AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: POSSIBLE SUBSTRATE BINDING PROTEIN OF ABC TRANSPORTER COMPND 3 SYSTEM; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: ABC-TYPE BRANCHED-CHAIN AMINO ACID TRANSPORTER; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 1076; SOURCE 4 GENE: RPA4397; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS RECEPTOR FAMILY LIGAND BINDING REGION, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3N0X 1 REMARK SEQADV REVDAT 3 17-JUL-19 3N0X 1 REMARK LINK REVDAT 2 08-NOV-17 3N0X 1 REMARK REVDAT 1 14-JUL-10 3N0X 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF AN ABC-TYPE BRANCHED-CHAIN AMINO ACID JRNL TITL 2 TRANSPORTER (RPA4397) FROM RHODOPSEUDOMONAS PALUSTRIS CGA009 JRNL TITL 3 AT 1.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 55225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2800 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3800 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 195 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2799 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 526 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : 1.50000 REMARK 3 B33 (A**2) : -1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.697 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3070 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2085 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4212 ; 1.508 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5157 ; 0.919 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 5.414 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;38.921 ;25.280 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 537 ;11.811 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.436 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 480 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3481 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 582 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1942 ; 1.214 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 784 ; 0.252 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3158 ; 2.125 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1128 ; 3.494 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1023 ; 5.217 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 388 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8675 8.6908 53.8698 REMARK 3 T TENSOR REMARK 3 T11: 0.0312 T22: 0.0031 REMARK 3 T33: 0.0194 T12: 0.0055 REMARK 3 T13: -0.0062 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.9112 L22: 0.3010 REMARK 3 L33: 0.3413 L12: 0.2090 REMARK 3 L13: -0.1313 L23: 0.0379 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: -0.0508 S13: -0.0074 REMARK 3 S21: -0.0011 S22: -0.0119 S23: 0.0056 REMARK 3 S31: -0.0243 S32: -0.0191 S33: -0.0020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4. WATERS WERE EXCLUDED FROM TLS GROUPS. 5. GLYCEROL REMARK 3 (GOL) FROM THE CRYOPROTECTANT SOLUTION HAS BEEN MODELED IN THE REMARK 3 SOLVENT STRUCTURE. REMARK 4 REMARK 4 3N0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97949,0.97898 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HO RIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55240 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.348 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NAOAC, 30.0000% PEG-8000, 0.1M REMARK 280 CACODYLATE PH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.90300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 15 REMARK 465 ALA A 16 REMARK 465 ASP A 17 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 CD CE NZ REMARK 470 GLU A 32 CD OE1 OE2 REMARK 470 LYS A 36 CD CE NZ REMARK 470 LYS A 76 NZ REMARK 470 GLU A 109 CD OE1 OE2 REMARK 470 GLU A 127 CD OE1 OE2 REMARK 470 LYS A 181 CD CE NZ REMARK 470 LYS A 239 CD CE NZ REMARK 470 GLN A 314 CD OE1 NE2 REMARK 470 LYS A 339 CD CE NZ REMARK 470 LYS A 344 CD CE NZ REMARK 470 LYS A 359 CD CE NZ REMARK 470 LYS A 376 CE NZ REMARK 470 LYS A 385 CD CE NZ REMARK 470 LYS A 387 CG CD CE NZ REMARK 470 LYS A 388 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 431 O HOH A 596 2.14 REMARK 500 O HOH A 498 O HOH A 700 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 763 O HOH A 887 2756 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 84 -79.44 -85.86 REMARK 500 ASP A 237 64.21 64.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 405167 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 16-388) WAS EXPRESSED WITH AN N-TERMINAL REMARK 999 PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3N0X A 16 388 UNP Q6N1K8 Q6N1K8_RHOPA 16 388 SEQADV 3N0X GLY A 15 UNP Q6N1K8 EXPRESSION TAG SEQRES 1 A 374 GLY ALA ASP ASP LEU LYS ILE ALA LEU ILE TYR GLY LYS SEQRES 2 A 374 THR GLY PRO LEU GLU ALA TYR ALA LYS GLN THR GLU THR SEQRES 3 A 374 GLY LEU MSE MSE GLY LEU GLU TYR ALA THR LYS GLY THR SEQRES 4 A 374 MSE THR LEU ASP GLY ARG LYS ILE VAL VAL ILE THR LYS SEQRES 5 A 374 ASP ASP GLN SER LYS PRO ASP LEU SER LYS ALA ALA LEU SEQRES 6 A 374 ALA GLU ALA TYR GLN ASP ASP GLY ALA ASP ILE ALA ILE SEQRES 7 A 374 GLY THR SER SER SER ALA ALA ALA LEU ALA ASP LEU PRO SEQRES 8 A 374 VAL ALA GLU GLU ASN LYS LYS ILE LEU ILE VAL GLU PRO SEQRES 9 A 374 ALA VAL ALA ASP GLN ILE THR GLY GLU LYS TRP ASN ARG SEQRES 10 A 374 TYR ILE PHE ARG THR GLY ARG ASN SER SER GLN ASP ALA SEQRES 11 A 374 ILE SER ASN ALA VAL ALA ILE GLY LYS GLN GLY VAL THR SEQRES 12 A 374 ILE ALA THR LEU ALA GLN ASP TYR ALA PHE GLY ARG ASP SEQRES 13 A 374 GLY VAL ALA ALA PHE LYS GLU ALA LEU ALA LYS THR GLY SEQRES 14 A 374 ALA THR LEU ALA THR GLU GLU TYR VAL PRO THR THR THR SEQRES 15 A 374 THR ASP PHE THR ALA VAL GLY GLN ARG LEU PHE ASP ALA SEQRES 16 A 374 LEU LYS ASP LYS PRO GLY LYS LYS ILE ILE TRP VAL ILE SEQRES 17 A 374 TRP ALA GLY GLY GLY ASP PRO LEU THR LYS LEU GLN ASP SEQRES 18 A 374 MSE ASP PRO LYS ARG TYR GLY ILE GLU LEU SER THR GLY SEQRES 19 A 374 GLY ASN ILE LEU PRO ALA LEU ALA ALA TYR LYS ARG LEU SEQRES 20 A 374 PRO GLY MSE GLU GLY ALA THR TYR TYR TYR TYR ASP ILE SEQRES 21 A 374 PRO LYS ASN PRO ILE ASN GLU TRP LEU VAL THR GLU HIS SEQRES 22 A 374 GLN LYS ARG PHE ASN ALA PRO PRO ASP PHE PHE THR ALA SEQRES 23 A 374 GLY GLY PHE SER ALA ALA MSE ALA VAL VAL THR ALA VAL SEQRES 24 A 374 GLN LYS ALA LYS SER THR ASP THR GLU LYS LEU ILE ALA SEQRES 25 A 374 ALA MSE GLU GLY MSE GLU PHE ASP THR PRO LYS GLY LYS SEQRES 26 A 374 MSE VAL PHE ARG LYS GLU ASP HIS GLN ALA LEU GLN SER SEQRES 27 A 374 MSE TYR HIS PHE LYS VAL LYS VAL ASP PRO ALA VAL ALA SEQRES 28 A 374 TRP ALA VAL LEU GLU PRO VAL ARG GLU LEU LYS ILE GLU SEQRES 29 A 374 GLU MSE ASN ILE PRO ILE LYS ASN LYS LYS MODRES 3N0X MSE A 43 MET SELENOMETHIONINE MODRES 3N0X MSE A 44 MET SELENOMETHIONINE MODRES 3N0X MSE A 54 MET SELENOMETHIONINE MODRES 3N0X MSE A 236 MET SELENOMETHIONINE MODRES 3N0X MSE A 264 MET SELENOMETHIONINE MODRES 3N0X MSE A 307 MET SELENOMETHIONINE MODRES 3N0X MSE A 328 MET SELENOMETHIONINE MODRES 3N0X MSE A 331 MET SELENOMETHIONINE MODRES 3N0X MSE A 340 MET SELENOMETHIONINE MODRES 3N0X MSE A 353 MET SELENOMETHIONINE MODRES 3N0X MSE A 380 MET SELENOMETHIONINE HET MSE A 43 8 HET MSE A 44 8 HET MSE A 54 8 HET MSE A 236 8 HET MSE A 264 13 HET MSE A 307 8 HET MSE A 328 8 HET MSE A 331 8 HET MSE A 340 8 HET MSE A 353 8 HET MSE A 380 8 HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 HOH *526(H2 O) HELIX 1 1 LEU A 31 THR A 50 1 20 HELIX 2 2 LYS A 71 ASP A 85 1 15 HELIX 3 3 SER A 96 LYS A 111 1 16 HELIX 4 4 ALA A 121 GLY A 126 5 6 HELIX 5 5 ASN A 139 GLY A 152 1 14 HELIX 6 6 TYR A 165 ALA A 180 1 16 HELIX 7 7 PHE A 199 LYS A 211 1 13 HELIX 8 8 ASP A 228 MSE A 236 1 9 HELIX 9 9 ASP A 237 TYR A 241 5 5 HELIX 10 10 PRO A 253 LEU A 261 5 9 HELIX 11 11 ASN A 277 ASN A 292 1 16 HELIX 12 12 ASP A 296 LYS A 317 1 22 HELIX 13 13 ASP A 320 GLU A 329 1 10 HELIX 14 14 LYS A 376 MSE A 380 5 5 SHEET 1 A 6 THR A 55 LEU A 56 0 SHEET 2 A 6 ARG A 59 ASP A 67 -1 O ARG A 59 N LEU A 56 SHEET 3 A 6 LEU A 19 TYR A 25 1 N LEU A 19 O VAL A 62 SHEET 4 A 6 ILE A 90 GLY A 93 1 O ILE A 92 N ILE A 24 SHEET 5 A 6 LEU A 114 VAL A 116 1 O ILE A 115 N ALA A 91 SHEET 6 A 6 ILE A 133 ARG A 135 1 O PHE A 134 N VAL A 116 SHEET 1 B 4 THR A 185 VAL A 192 0 SHEET 2 B 4 VAL A 156 GLN A 163 1 N ILE A 158 O ALA A 187 SHEET 3 B 4 LYS A 216 VAL A 221 1 O LYS A 216 N THR A 157 SHEET 4 B 4 ILE A 243 THR A 247 1 O GLU A 244 N LYS A 217 SHEET 1 C 3 GLU A 265 THR A 268 0 SHEET 2 C 3 MSE A 353 LYS A 359 -1 O TYR A 354 N THR A 268 SHEET 3 C 3 VAL A 368 LEU A 375 -1 O LEU A 375 N MSE A 353 SHEET 1 D 3 GLU A 332 THR A 335 0 SHEET 2 D 3 GLY A 338 PHE A 342 -1 O MSE A 340 N PHE A 333 SHEET 3 D 3 ALA A 349 LEU A 350 -1 O LEU A 350 N VAL A 341 LINK C LEU A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N GLY A 45 1555 1555 1.34 LINK C THR A 53 N MSE A 54 1555 1555 1.33 LINK C MSE A 54 N THR A 55 1555 1555 1.33 LINK C ASP A 235 N MSE A 236 1555 1555 1.34 LINK C MSE A 236 N ASP A 237 1555 1555 1.33 LINK C GLY A 263 N MSE A 264 1555 1555 1.33 LINK C MSE A 264 N GLU A 265 1555 1555 1.33 LINK C ALA A 306 N MSE A 307 1555 1555 1.34 LINK C MSE A 307 N ALA A 308 1555 1555 1.33 LINK C ALA A 327 N MSE A 328 1555 1555 1.33 LINK C MSE A 328 N GLU A 329 1555 1555 1.34 LINK C GLY A 330 N MSE A 331 1555 1555 1.33 LINK C MSE A 331 N GLU A 332 1555 1555 1.33 LINK C LYS A 339 N MSE A 340 1555 1555 1.32 LINK C MSE A 340 N VAL A 341 1555 1555 1.34 LINK C SER A 352 N MSE A 353 1555 1555 1.33 LINK C MSE A 353 N TYR A 354 1555 1555 1.34 LINK C GLU A 379 N MSE A 380 1555 1555 1.34 LINK C MSE A 380 N ASN A 381 1555 1555 1.32 CISPEP 1 GLY A 93 THR A 94 0 -8.91 CISPEP 2 GLU A 117 PRO A 118 0 0.15 SITE 1 AC1 8 ARG A 138 ASN A 250 PHE A 298 HOH A 501 SITE 2 AC1 8 HOH A 811 HOH A 828 HOH A 835 HOH A 867 SITE 1 AC2 2 ASP A 361 ALA A 363 SITE 1 AC3 7 GLN A 234 GLU A 244 LEU A 245 PRO A 262 SITE 2 AC3 7 GLY A 263 MSE A 264 HOH A 548 CRYST1 58.736 41.806 75.979 90.00 110.63 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017025 0.000000 0.006409 0.00000 SCALE2 0.000000 0.023920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014063 0.00000