HEADER TRANSPORT PROTEIN 15-MAY-10 3N1E TITLE VPS54 C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 54; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 836-974; COMPND 5 SYNONYM: TUMOR ANTIGEN SLP-8P HOMOLOG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: VPS54; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: GST-PARALLEL KEYWDS SPINAL MUSCULAR ATROPHY, VESICLE TRAFFICKING, GOLGI APPARATUS, KEYWDS 2 TETHERING COMPLEX, GARP., TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.J.PEREZ-VICTORIA,G.ABASCAL-PALACIOS,I.TASCON,A.KAJAVA,E.P.PIORO, AUTHOR 2 J.S.BONIFACINO,A.HIERRO REVDAT 5 21-FEB-24 3N1E 1 REMARK SEQADV LINK REVDAT 4 15-NOV-17 3N1E 1 REMARK REVDAT 3 08-NOV-17 3N1E 1 REMARK REVDAT 2 18-AUG-10 3N1E 1 JRNL REVDAT 1 14-JUL-10 3N1E 0 JRNL AUTH F.J.PEREZ-VICTORIA,G.ABASCAL-PALACIOS,I.TASCON,A.KAJAVA, JRNL AUTH 2 J.G.MAGADAN,E.P.PIORO,J.S.BONIFACINO,A.HIERRO JRNL TITL STRUCTURAL BASIS FOR THE WOBBLER MOUSE NEURODEGENERATIVE JRNL TITL 2 DISORDER CAUSED BY MUTATION IN THE VPS54 SUBUNIT OF THE GARP JRNL TITL 3 COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 12860 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20615984 JRNL DOI 10.1073/PNAS.1004756107 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.180 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 29964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3750 - 3.7840 1.00 2903 154 0.1810 0.2140 REMARK 3 2 3.7840 - 3.0040 1.00 2730 155 0.1630 0.1970 REMARK 3 3 3.0040 - 2.6240 1.00 2712 147 0.1770 0.2060 REMARK 3 4 2.6240 - 2.3840 0.99 2666 145 0.1780 0.2140 REMARK 3 5 2.3840 - 2.2140 0.99 2637 144 0.1700 0.2180 REMARK 3 6 2.2140 - 2.0830 0.98 2611 133 0.1620 0.2060 REMARK 3 7 2.0830 - 1.9790 0.97 2538 152 0.1640 0.2010 REMARK 3 8 1.9790 - 1.8930 0.95 2541 128 0.1690 0.1920 REMARK 3 9 1.8930 - 1.8200 0.93 2472 119 0.1810 0.2390 REMARK 3 10 1.8200 - 1.7570 0.90 2355 122 0.1840 0.2250 REMARK 3 11 1.7570 - 1.7020 0.85 2285 115 0.2020 0.2390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 48.98 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.81500 REMARK 3 B22 (A**2) : -0.98700 REMARK 3 B33 (A**2) : -2.82800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2444 REMARK 3 ANGLE : 1.284 3319 REMARK 3 CHIRALITY : 0.086 371 REMARK 3 PLANARITY : 0.006 419 REMARK 3 DIHEDRAL : 18.356 944 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3N1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30991 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 0.2M MGCL2, 5% GLYCEROL, REMARK 280 PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.88000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.02850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.53200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.02850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.53200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 14.88000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 115.59600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 120.05700 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 834 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 241 O HOH B 207 1.86 REMARK 500 OE1 GLU B 907 O HOH B 310 1.87 REMARK 500 NZ LYS A 927 O HOH A 255 1.90 REMARK 500 OE2 GLU A 974 O HOH A 249 2.04 REMARK 500 OE1 GLU A 974 O HOH A 249 2.07 REMARK 500 O HOH B 259 O HOH B 317 2.07 REMARK 500 O HOH B 224 O HOH B 276 2.07 REMARK 500 O HOH B 271 O HOH B 285 2.11 REMARK 500 O HOH A 300 O HOH A 301 2.12 REMARK 500 OD1 ASP B 966 O HOH B 127 2.13 REMARK 500 NZ LYS B 926 O HOH B 312 2.13 REMARK 500 CD GLU A 974 O HOH A 249 2.14 REMARK 500 O HOH A 302 O HOH B 324 2.15 REMARK 500 NE2 GLN B 941 O HOH B 309 2.15 REMARK 500 O HOH B 159 O HOH B 190 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 237 O HOH B 250 2565 2.03 REMARK 500 CE MET B 834 O HOH A 177 4466 2.03 REMARK 500 O HOH A 307 O HOH B 227 3756 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 835 -178.32 -69.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 975 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 976 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 977 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 975 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 976 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 977 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 978 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A2F RELATED DB: PDB REMARK 900 RELATED ID: 2FJI RELATED DB: PDB REMARK 900 RELATED ID: 3FHN RELATED DB: PDB REMARK 900 RELATED ID: 2PFV RELATED DB: PDB REMARK 900 RELATED ID: 3HR0 RELATED DB: PDB REMARK 900 RELATED ID: 3N1B RELATED DB: PDB DBREF 3N1E A 836 974 UNP Q5SPW0 VPS54_MOUSE 836 974 DBREF 3N1E B 836 974 UNP Q5SPW0 VPS54_MOUSE 836 974 SEQADV 3N1E MET A 834 UNP Q5SPW0 EXPRESSION TAG SEQADV 3N1E ASP A 835 UNP Q5SPW0 EXPRESSION TAG SEQADV 3N1E MET B 834 UNP Q5SPW0 EXPRESSION TAG SEQADV 3N1E ASP B 835 UNP Q5SPW0 EXPRESSION TAG SEQRES 1 A 141 MET ASP GLN TRP SER MET LEU ARG HIS PHE ASP HIS ILE SEQRES 2 A 141 THR LYS ASP TYR HIS ASP HIS ILE ALA GLU ILE SER ALA SEQRES 3 A 141 LYS LEU VAL ALA ILE MET ASP SER LEU PHE ASP LYS LEU SEQRES 4 A 141 LEU SER LYS TYR GLU VAL LYS ALA PRO VAL PRO SER PRO SEQRES 5 A 141 CYS PHE ARG ASN ILE CYS LYS GLN MET THR LYS MET HIS SEQRES 6 A 141 GLU ALA ILE PHE ASP LEU LEU PRO GLU GLU GLN THR GLN SEQRES 7 A 141 MET LEU PHE LEU ARG ILE ASN ALA SER TYR LYS LEU HIS SEQRES 8 A 141 LEU LYS LYS GLN LEU SER HIS LEU ASN VAL ILE ASN ASP SEQRES 9 A 141 GLY GLY PRO GLN ASN GLY LEU VAL THR ALA ASP VAL ALA SEQRES 10 A 141 PHE TYR THR GLY ASN LEU GLN ALA LEU LYS GLY LEU LYS SEQRES 11 A 141 ASP LEU ASP LEU ASN MET ALA GLU ILE TRP GLU SEQRES 1 B 141 MET ASP GLN TRP SER MET LEU ARG HIS PHE ASP HIS ILE SEQRES 2 B 141 THR LYS ASP TYR HIS ASP HIS ILE ALA GLU ILE SER ALA SEQRES 3 B 141 LYS LEU VAL ALA ILE MET ASP SER LEU PHE ASP LYS LEU SEQRES 4 B 141 LEU SER LYS TYR GLU VAL LYS ALA PRO VAL PRO SER PRO SEQRES 5 B 141 CYS PHE ARG ASN ILE CYS LYS GLN MET THR LYS MET HIS SEQRES 6 B 141 GLU ALA ILE PHE ASP LEU LEU PRO GLU GLU GLN THR GLN SEQRES 7 B 141 MET LEU PHE LEU ARG ILE ASN ALA SER TYR LYS LEU HIS SEQRES 8 B 141 LEU LYS LYS GLN LEU SER HIS LEU ASN VAL ILE ASN ASP SEQRES 9 B 141 GLY GLY PRO GLN ASN GLY LEU VAL THR ALA ASP VAL ALA SEQRES 10 B 141 PHE TYR THR GLY ASN LEU GLN ALA LEU LYS GLY LEU LYS SEQRES 11 B 141 ASP LEU ASP LEU ASN MET ALA GLU ILE TRP GLU HET GOL A 1 6 HET GOL A 975 6 HET GOL A 976 6 HET MG A 977 1 HET MG B 1 1 HET MG B 975 1 HET MG B 976 1 HET MG B 977 1 HET GOL B 978 6 HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 6 MG 5(MG 2+) FORMUL 12 HOH *330(H2 O) HELIX 1 1 ASP A 835 LYS A 848 1 14 HELIX 2 2 ASP A 849 SER A 874 1 26 HELIX 3 3 SER A 884 PHE A 902 1 19 HELIX 4 4 PRO A 906 LEU A 932 1 27 HELIX 5 5 GLY A 939 ALA A 958 1 20 HELIX 6 6 ASN A 968 GLU A 974 5 7 HELIX 7 7 ASP B 835 SER B 874 1 40 HELIX 8 8 SER B 884 LEU B 905 1 22 HELIX 9 9 PRO B 906 LEU B 932 1 27 HELIX 10 10 GLY B 939 ALA B 958 1 20 HELIX 11 11 ASN B 968 GLU B 974 5 7 LINK O HOH A 279 MG MG A 977 1555 1555 2.95 LINK MG MG B 1 O HOH B 245 1555 1555 2.71 LINK O HOH B 31 MG MG B 977 1555 1555 2.93 CISPEP 1 ALA A 880 PRO A 881 0 4.59 CISPEP 2 VAL A 882 PRO A 883 0 4.05 CISPEP 3 ALA B 880 PRO B 881 0 3.76 CISPEP 4 VAL B 882 PRO B 883 0 -0.32 SITE 1 AC1 5 HOH A 79 VAL A 934 ILE A 935 ASN A 936 SITE 2 AC1 5 TRP A 973 SITE 1 AC2 6 HOH A 36 HOH A 142 HOH A 232 LYS A 926 SITE 2 AC2 6 SER A 930 GLU A 974 SITE 1 AC3 3 HOH A 291 THR A 946 TRP A 973 SITE 1 AC4 5 HOH A 13 HOH A 33 HOH A 279 PRO A 940 SITE 2 AC4 5 GLN A 941 SITE 1 AC5 3 HOH B 245 THR B 946 TRP B 973 SITE 1 AC6 4 GLN A 836 HOH B 292 LYS B 892 GLN B 893 SITE 1 AC7 2 ASP B 835 GLN B 836 SITE 1 AC8 4 HOH A 171 HOH B 31 PRO B 940 GLN B 941 SITE 1 AC9 4 ASP A 964 HOH B 202 ASP B 964 ASP B 966 CRYST1 29.760 77.064 120.057 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033602 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008329 0.00000