data_3N1J # _entry.id 3N1J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3N1J pdb_00003n1j 10.2210/pdb3n1j/pdb NDB NA0566 ? ? RCSB RCSB059262 ? ? WWPDB D_1000059262 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3N1H 'Crystal Structure of StWhy2' unspecified PDB 3N1I 'Crystal Structure of StWhy2-ERE32 complex' unspecified PDB 3N1K 'Crystal Structure of StWhy2-cERE32 complex' unspecified PDB 3N1L 'Crystal Structure of StWhy2-rcERE32 complex' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3N1J _pdbx_database_status.recvd_initial_deposition_date 2010-05-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cappadocia, L.' 1 'Brisson, N.' 2 'Sygusch, J.' 3 # _citation.id primary _citation.title 'Crystal Structures of DNA-Whirly Complexes and Their Role in Arabidopsis Organelle Genome Repair.' _citation.journal_abbrev 'Plant Cell' _citation.journal_volume 22 _citation.page_first 1849 _citation.page_last 1867 _citation.year 2010 _citation.journal_id_ASTM PLCEEW _citation.country US _citation.journal_id_ISSN 1040-4651 _citation.journal_id_CSD 2109 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20551348 _citation.pdbx_database_id_DOI 10.1105/tpc.109.071399 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cappadocia, L.' 1 ? primary 'Marechal, A.' 2 ? primary 'Parent, J.S.' 3 ? primary 'Lepage, E.' 4 ? primary 'Sygusch, J.' 5 ? primary 'Brisson, N.' 6 ? # _cell.entry_id 3N1J _cell.length_a 166.495 _cell.length_b 166.495 _cell.length_c 166.495 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3N1J _symmetry.space_group_name_H-M 'F 4 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein StWhy2' 20000.715 1 ? ? ? ? 2 polymer syn 'DNA 32-mer dT32' 2692.778 1 ? ? ? ? 3 water nat water 18.015 60 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MADAGKREGRVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSL ISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHI MGWDRFTNRPLEHHHHHH ; ;MADAGKREGRVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSL ISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHI MGWDRFTNRPLEHHHHHH ; A ? 2 polydeoxyribonucleotide no no '(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)' TTTTTTTTT B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 ASP n 1 4 ALA n 1 5 GLY n 1 6 LYS n 1 7 ARG n 1 8 GLU n 1 9 GLY n 1 10 ARG n 1 11 VAL n 1 12 PHE n 1 13 ALA n 1 14 PRO n 1 15 TYR n 1 16 SER n 1 17 VAL n 1 18 PHE n 1 19 LYS n 1 20 GLY n 1 21 LYS n 1 22 ALA n 1 23 ALA n 1 24 LEU n 1 25 SER n 1 26 ALA n 1 27 GLU n 1 28 PRO n 1 29 ARG n 1 30 LEU n 1 31 PRO n 1 32 THR n 1 33 PHE n 1 34 ASN n 1 35 ARG n 1 36 LEU n 1 37 ASP n 1 38 SER n 1 39 GLY n 1 40 GLY n 1 41 VAL n 1 42 LYS n 1 43 LEU n 1 44 ASN n 1 45 ARG n 1 46 ARG n 1 47 GLY n 1 48 VAL n 1 49 ILE n 1 50 MET n 1 51 LEU n 1 52 THR n 1 53 PHE n 1 54 TRP n 1 55 PRO n 1 56 SER n 1 57 VAL n 1 58 GLY n 1 59 GLU n 1 60 ARG n 1 61 LYS n 1 62 TYR n 1 63 ASP n 1 64 TRP n 1 65 GLU n 1 66 LYS n 1 67 ARG n 1 68 GLN n 1 69 LEU n 1 70 PHE n 1 71 ALA n 1 72 LEU n 1 73 SER n 1 74 ALA n 1 75 THR n 1 76 GLU n 1 77 VAL n 1 78 GLY n 1 79 SER n 1 80 LEU n 1 81 ILE n 1 82 SER n 1 83 MET n 1 84 GLY n 1 85 THR n 1 86 ARG n 1 87 ASP n 1 88 SER n 1 89 SER n 1 90 GLU n 1 91 PHE n 1 92 PHE n 1 93 HIS n 1 94 ASP n 1 95 PRO n 1 96 SER n 1 97 MET n 1 98 LEU n 1 99 SER n 1 100 SER n 1 101 ASN n 1 102 ALA n 1 103 GLY n 1 104 GLN n 1 105 VAL n 1 106 ARG n 1 107 LYS n 1 108 SER n 1 109 LEU n 1 110 SER n 1 111 ILE n 1 112 LYS n 1 113 PRO n 1 114 ASN n 1 115 ALA n 1 116 ASP n 1 117 GLY n 1 118 SER n 1 119 GLY n 1 120 TYR n 1 121 PHE n 1 122 ILE n 1 123 SER n 1 124 LEU n 1 125 SER n 1 126 VAL n 1 127 VAL n 1 128 ASN n 1 129 ASN n 1 130 ASN n 1 131 LEU n 1 132 LYS n 1 133 THR n 1 134 ASN n 1 135 ASP n 1 136 ARG n 1 137 PHE n 1 138 THR n 1 139 VAL n 1 140 PRO n 1 141 VAL n 1 142 THR n 1 143 THR n 1 144 ALA n 1 145 GLU n 1 146 PHE n 1 147 ALA n 1 148 VAL n 1 149 MET n 1 150 ARG n 1 151 THR n 1 152 ALA n 1 153 PHE n 1 154 SER n 1 155 PHE n 1 156 ALA n 1 157 LEU n 1 158 PRO n 1 159 HIS n 1 160 ILE n 1 161 MET n 1 162 GLY n 1 163 TRP n 1 164 ASP n 1 165 ARG n 1 166 PHE n 1 167 THR n 1 168 ASN n 1 169 ARG n 1 170 PRO n 1 171 LEU n 1 172 GLU n 1 173 HIS n 1 174 HIS n 1 175 HIS n 1 176 HIS n 1 177 HIS n 1 178 HIS n 2 1 DT n 2 2 DT n 2 3 DT n 2 4 DT n 2 5 DT n 2 6 DT n 2 7 DT n 2 8 DT n 2 9 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Potato _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene StWhy2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Kennebec _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Solanum tuberosum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4113 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA Synthesis' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3N1J 3N1J 1 ? ;MADAGKREGRVFAPYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSL ISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHI MGWDRFTNRPLEHHHHHH ; ? 2 PDB 3N1J 3N1J 2 ? TTTTTTTTT ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3N1J A 1 ? 178 ? 3N1J 47 ? 224 ? 47 224 2 2 3N1J B 1 ? 9 ? 3N1J 1 ? 9 ? 1 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3N1J _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_percent_sol 47.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '25% PEG6000, 0.1M Tris, 1.2M LiCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-11-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.08 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.08 # _reflns.entry_id 3N1J _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.65 _reflns.number_obs 6188 _reflns.number_all 6196 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.118 _reflns.pdbx_netI_over_sigmaI 9.1 _reflns.B_iso_Wilson_estimate 52.0 _reflns.pdbx_redundancy 19.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.65 _reflns_shell.d_res_low 2.74 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.87 _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 12.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 605 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3N1J _refine.ls_number_reflns_obs 6011 _refine.ls_number_reflns_all 6188 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.05 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.197 _refine.ls_d_res_high 2.650 _refine.ls_percent_reflns_obs 97.12 _refine.ls_R_factor_obs 0.2160 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2115 _refine.ls_R_factor_R_free 0.2579 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.03 _refine.ls_number_reflns_R_free 603 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 54.37 _refine.aniso_B[1][1] -3.1633 _refine.aniso_B[2][2] -3.1633 _refine.aniso_B[3][3] -3.1633 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.307 _refine.solvent_model_param_bsol 48.914 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1L3A' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 2.53 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1266 _refine_hist.pdbx_number_atoms_nucleic_acid 180 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 1506 _refine_hist.d_res_high 2.650 _refine_hist.d_res_low 38.197 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 1495 'X-RAY DIFFRACTION' ? f_angle_d 0.997 ? ? 2056 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.387 ? ? 558 'X-RAY DIFFRACTION' ? f_chiral_restr 0.055 ? ? 225 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 236 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.650 2.9164 1234 0.2638 92.00 0.3118 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.9164 3.3382 1317 0.2124 97.00 0.2950 . . 145 . . . . 'X-RAY DIFFRACTION' . 3.3382 4.2049 1376 0.1776 100.00 0.2282 . . 154 . . . . 'X-RAY DIFFRACTION' . 4.2049 38.2005 1481 0.2147 99.00 0.2472 . . 165 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3N1J _struct.title 'Crystal structure of a StWhy2-dT32 complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3N1J _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'Single-stranded DNA binding protein, Plant, Whirly, Protein-DNA complex, DNA BINDING PROTEIN-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ;Authors state that the biological unit is a tetramer protein plus a 32-mer DNA molecule, as indicated as pentamer in remark 350. Please refer to remark 999 for more details on the sequences specificity of this crystal structure. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 63 ? ARG A 67 ? ASP A 109 ARG A 113 5 ? 5 HELX_P HELX_P2 2 SER A 73 ? SER A 82 ? SER A 119 SER A 128 1 ? 10 HELX_P HELX_P3 3 THR A 142 ? MET A 161 ? THR A 188 MET A 207 1 ? 20 HELX_P HELX_P4 4 GLY A 162 ? PHE A 166 ? GLY A 208 PHE A 212 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 15 ? PHE A 18 ? TYR A 61 PHE A 64 A 2 ALA A 22 ? ARG A 29 ? ALA A 68 ARG A 75 A 3 VAL A 48 ? PRO A 55 ? VAL A 94 PRO A 101 A 4 GLN A 68 ? LEU A 72 ? GLN A 114 LEU A 118 B 1 PHE A 33 ? ARG A 35 ? PHE A 79 ARG A 81 B 2 VAL A 41 ? LEU A 43 ? VAL A 87 LEU A 89 C 1 SER A 89 ? HIS A 93 ? SER A 135 HIS A 139 C 2 VAL A 105 ? PRO A 113 ? VAL A 151 PRO A 159 C 3 TYR A 120 ? ASN A 128 ? TYR A 166 ASN A 174 C 4 THR A 133 ? VAL A 141 ? THR A 179 VAL A 187 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 17 ? N VAL A 63 O LEU A 24 ? O LEU A 70 A 2 3 N ARG A 29 ? N ARG A 75 O VAL A 48 ? O VAL A 94 A 3 4 N PHE A 53 ? N PHE A 99 O GLN A 68 ? O GLN A 114 B 1 2 N ASN A 34 ? N ASN A 80 O LYS A 42 ? O LYS A 88 C 1 2 N PHE A 91 ? N PHE A 137 O LEU A 109 ? O LEU A 155 C 2 3 N LYS A 112 ? N LYS A 158 O PHE A 121 ? O PHE A 167 C 3 4 N ILE A 122 ? N ILE A 168 O VAL A 139 ? O VAL A 185 # _database_PDB_matrix.entry_id 3N1J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3N1J _atom_sites.fract_transf_matrix[1][1] 0.006006 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006006 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006006 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 47 ? ? ? A . n A 1 2 ALA 2 48 ? ? ? A . n A 1 3 ASP 3 49 ? ? ? A . n A 1 4 ALA 4 50 ? ? ? A . n A 1 5 GLY 5 51 ? ? ? A . n A 1 6 LYS 6 52 ? ? ? A . n A 1 7 ARG 7 53 ? ? ? A . n A 1 8 GLU 8 54 ? ? ? A . n A 1 9 GLY 9 55 55 GLY GLY A . n A 1 10 ARG 10 56 56 ARG ARG A . n A 1 11 VAL 11 57 57 VAL VAL A . n A 1 12 PHE 12 58 58 PHE PHE A . n A 1 13 ALA 13 59 59 ALA ALA A . n A 1 14 PRO 14 60 60 PRO PRO A . n A 1 15 TYR 15 61 61 TYR TYR A . n A 1 16 SER 16 62 62 SER SER A . n A 1 17 VAL 17 63 63 VAL VAL A . n A 1 18 PHE 18 64 64 PHE PHE A . n A 1 19 LYS 19 65 65 LYS LYS A . n A 1 20 GLY 20 66 66 GLY GLY A . n A 1 21 LYS 21 67 67 LYS LYS A . n A 1 22 ALA 22 68 68 ALA ALA A . n A 1 23 ALA 23 69 69 ALA ALA A . n A 1 24 LEU 24 70 70 LEU LEU A . n A 1 25 SER 25 71 71 SER SER A . n A 1 26 ALA 26 72 72 ALA ALA A . n A 1 27 GLU 27 73 73 GLU GLU A . n A 1 28 PRO 28 74 74 PRO PRO A . n A 1 29 ARG 29 75 75 ARG ARG A . n A 1 30 LEU 30 76 76 LEU LEU A . n A 1 31 PRO 31 77 77 PRO PRO A . n A 1 32 THR 32 78 78 THR THR A . n A 1 33 PHE 33 79 79 PHE PHE A . n A 1 34 ASN 34 80 80 ASN ASN A . n A 1 35 ARG 35 81 81 ARG ARG A . n A 1 36 LEU 36 82 82 LEU LEU A . n A 1 37 ASP 37 83 83 ASP ASP A . n A 1 38 SER 38 84 84 SER SER A . n A 1 39 GLY 39 85 85 GLY GLY A . n A 1 40 GLY 40 86 86 GLY GLY A . n A 1 41 VAL 41 87 87 VAL VAL A . n A 1 42 LYS 42 88 88 LYS LYS A . n A 1 43 LEU 43 89 89 LEU LEU A . n A 1 44 ASN 44 90 90 ASN ASN A . n A 1 45 ARG 45 91 91 ARG ARG A . n A 1 46 ARG 46 92 92 ARG ARG A . n A 1 47 GLY 47 93 93 GLY GLY A . n A 1 48 VAL 48 94 94 VAL VAL A . n A 1 49 ILE 49 95 95 ILE ILE A . n A 1 50 MET 50 96 96 MET MET A . n A 1 51 LEU 51 97 97 LEU LEU A . n A 1 52 THR 52 98 98 THR THR A . n A 1 53 PHE 53 99 99 PHE PHE A . n A 1 54 TRP 54 100 100 TRP TRP A . n A 1 55 PRO 55 101 101 PRO PRO A . n A 1 56 SER 56 102 102 SER SER A . n A 1 57 VAL 57 103 103 VAL VAL A . n A 1 58 GLY 58 104 104 GLY GLY A . n A 1 59 GLU 59 105 105 GLU GLU A . n A 1 60 ARG 60 106 106 ARG ARG A . n A 1 61 LYS 61 107 107 LYS LYS A . n A 1 62 TYR 62 108 108 TYR TYR A . n A 1 63 ASP 63 109 109 ASP ASP A . n A 1 64 TRP 64 110 110 TRP TRP A . n A 1 65 GLU 65 111 111 GLU GLU A . n A 1 66 LYS 66 112 112 LYS LYS A . n A 1 67 ARG 67 113 113 ARG ARG A . n A 1 68 GLN 68 114 114 GLN GLN A . n A 1 69 LEU 69 115 115 LEU LEU A . n A 1 70 PHE 70 116 116 PHE PHE A . n A 1 71 ALA 71 117 117 ALA ALA A . n A 1 72 LEU 72 118 118 LEU LEU A . n A 1 73 SER 73 119 119 SER SER A . n A 1 74 ALA 74 120 120 ALA ALA A . n A 1 75 THR 75 121 121 THR THR A . n A 1 76 GLU 76 122 122 GLU GLU A . n A 1 77 VAL 77 123 123 VAL VAL A . n A 1 78 GLY 78 124 124 GLY GLY A . n A 1 79 SER 79 125 125 SER SER A . n A 1 80 LEU 80 126 126 LEU LEU A . n A 1 81 ILE 81 127 127 ILE ILE A . n A 1 82 SER 82 128 128 SER SER A . n A 1 83 MET 83 129 129 MET MET A . n A 1 84 GLY 84 130 130 GLY GLY A . n A 1 85 THR 85 131 131 THR THR A . n A 1 86 ARG 86 132 132 ARG ARG A . n A 1 87 ASP 87 133 133 ASP ASP A . n A 1 88 SER 88 134 134 SER SER A . n A 1 89 SER 89 135 135 SER SER A . n A 1 90 GLU 90 136 136 GLU GLU A . n A 1 91 PHE 91 137 137 PHE PHE A . n A 1 92 PHE 92 138 138 PHE PHE A . n A 1 93 HIS 93 139 139 HIS HIS A . n A 1 94 ASP 94 140 140 ASP ASP A . n A 1 95 PRO 95 141 141 PRO PRO A . n A 1 96 SER 96 142 142 SER SER A . n A 1 97 MET 97 143 143 MET MET A . n A 1 98 LEU 98 144 144 LEU LEU A . n A 1 99 SER 99 145 145 SER SER A . n A 1 100 SER 100 146 146 SER SER A . n A 1 101 ASN 101 147 147 ASN ASN A . n A 1 102 ALA 102 148 148 ALA ALA A . n A 1 103 GLY 103 149 149 GLY GLY A . n A 1 104 GLN 104 150 150 GLN GLN A . n A 1 105 VAL 105 151 151 VAL VAL A . n A 1 106 ARG 106 152 152 ARG ARG A . n A 1 107 LYS 107 153 153 LYS LYS A . n A 1 108 SER 108 154 154 SER SER A . n A 1 109 LEU 109 155 155 LEU LEU A . n A 1 110 SER 110 156 156 SER SER A . n A 1 111 ILE 111 157 157 ILE ILE A . n A 1 112 LYS 112 158 158 LYS LYS A . n A 1 113 PRO 113 159 159 PRO PRO A . n A 1 114 ASN 114 160 160 ASN ASN A . n A 1 115 ALA 115 161 161 ALA ALA A . n A 1 116 ASP 116 162 162 ASP ASP A . n A 1 117 GLY 117 163 163 GLY GLY A . n A 1 118 SER 118 164 164 SER SER A . n A 1 119 GLY 119 165 165 GLY GLY A . n A 1 120 TYR 120 166 166 TYR TYR A . n A 1 121 PHE 121 167 167 PHE PHE A . n A 1 122 ILE 122 168 168 ILE ILE A . n A 1 123 SER 123 169 169 SER SER A . n A 1 124 LEU 124 170 170 LEU LEU A . n A 1 125 SER 125 171 171 SER SER A . n A 1 126 VAL 126 172 172 VAL VAL A . n A 1 127 VAL 127 173 173 VAL VAL A . n A 1 128 ASN 128 174 174 ASN ASN A . n A 1 129 ASN 129 175 175 ASN ASN A . n A 1 130 ASN 130 176 176 ASN ASN A . n A 1 131 LEU 131 177 177 LEU LEU A . n A 1 132 LYS 132 178 178 LYS LYS A . n A 1 133 THR 133 179 179 THR THR A . n A 1 134 ASN 134 180 180 ASN ASN A . n A 1 135 ASP 135 181 181 ASP ASP A . n A 1 136 ARG 136 182 182 ARG ARG A . n A 1 137 PHE 137 183 183 PHE PHE A . n A 1 138 THR 138 184 184 THR THR A . n A 1 139 VAL 139 185 185 VAL VAL A . n A 1 140 PRO 140 186 186 PRO PRO A . n A 1 141 VAL 141 187 187 VAL VAL A . n A 1 142 THR 142 188 188 THR THR A . n A 1 143 THR 143 189 189 THR THR A . n A 1 144 ALA 144 190 190 ALA ALA A . n A 1 145 GLU 145 191 191 GLU GLU A . n A 1 146 PHE 146 192 192 PHE PHE A . n A 1 147 ALA 147 193 193 ALA ALA A . n A 1 148 VAL 148 194 194 VAL VAL A . n A 1 149 MET 149 195 195 MET MET A . n A 1 150 ARG 150 196 196 ARG ARG A . n A 1 151 THR 151 197 197 THR THR A . n A 1 152 ALA 152 198 198 ALA ALA A . n A 1 153 PHE 153 199 199 PHE PHE A . n A 1 154 SER 154 200 200 SER SER A . n A 1 155 PHE 155 201 201 PHE PHE A . n A 1 156 ALA 156 202 202 ALA ALA A . n A 1 157 LEU 157 203 203 LEU LEU A . n A 1 158 PRO 158 204 204 PRO PRO A . n A 1 159 HIS 159 205 205 HIS HIS A . n A 1 160 ILE 160 206 206 ILE ILE A . n A 1 161 MET 161 207 207 MET MET A . n A 1 162 GLY 162 208 208 GLY GLY A . n A 1 163 TRP 163 209 209 TRP TRP A . n A 1 164 ASP 164 210 210 ASP ASP A . n A 1 165 ARG 165 211 211 ARG ARG A . n A 1 166 PHE 166 212 212 PHE PHE A . n A 1 167 THR 167 213 213 THR THR A . n A 1 168 ASN 168 214 214 ASN ASN A . n A 1 169 ARG 169 215 215 ARG ARG A . n A 1 170 PRO 170 216 ? ? ? A . n A 1 171 LEU 171 217 ? ? ? A . n A 1 172 GLU 172 218 ? ? ? A . n A 1 173 HIS 173 219 ? ? ? A . n A 1 174 HIS 174 220 ? ? ? A . n A 1 175 HIS 175 221 ? ? ? A . n A 1 176 HIS 176 222 ? ? ? A . n A 1 177 HIS 177 223 ? ? ? A . n A 1 178 HIS 178 224 ? ? ? A . n B 2 1 DT 1 1 1 DT DT B . n B 2 2 DT 2 2 2 DT DT B . n B 2 3 DT 3 3 3 DT DT B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DT 6 6 6 DT DT B . n B 2 7 DT 7 7 7 DT DT B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 DT 9 9 9 DT DT B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 3 3 HOH HOH A . C 3 HOH 4 4 4 HOH HOH A . C 3 HOH 5 7 7 HOH HOH A . C 3 HOH 6 8 8 HOH HOH A . C 3 HOH 7 9 9 HOH HOH A . C 3 HOH 8 10 10 HOH HOH A . C 3 HOH 9 11 11 HOH HOH A . C 3 HOH 10 12 12 HOH HOH A . C 3 HOH 11 13 13 HOH HOH A . C 3 HOH 12 14 14 HOH HOH A . C 3 HOH 13 15 15 HOH HOH A . C 3 HOH 14 16 16 HOH HOH A . C 3 HOH 15 17 17 HOH HOH A . C 3 HOH 16 18 18 HOH HOH A . C 3 HOH 17 19 19 HOH HOH A . C 3 HOH 18 20 20 HOH HOH A . C 3 HOH 19 21 21 HOH HOH A . C 3 HOH 20 23 23 HOH HOH A . C 3 HOH 21 24 24 HOH HOH A . C 3 HOH 22 25 25 HOH HOH A . C 3 HOH 23 26 26 HOH HOH A . C 3 HOH 24 27 27 HOH HOH A . C 3 HOH 25 28 28 HOH HOH A . C 3 HOH 26 29 29 HOH HOH A . C 3 HOH 27 30 30 HOH HOH A . C 3 HOH 28 31 31 HOH HOH A . C 3 HOH 29 32 32 HOH HOH A . C 3 HOH 30 33 33 HOH HOH A . C 3 HOH 31 34 34 HOH HOH A . C 3 HOH 32 35 35 HOH HOH A . C 3 HOH 33 37 37 HOH HOH A . C 3 HOH 34 38 38 HOH HOH A . C 3 HOH 35 39 39 HOH HOH A . C 3 HOH 36 40 40 HOH HOH A . C 3 HOH 37 41 41 HOH HOH A . C 3 HOH 38 43 43 HOH HOH A . C 3 HOH 39 44 44 HOH HOH A . C 3 HOH 40 45 45 HOH HOH A . C 3 HOH 41 46 46 HOH HOH A . C 3 HOH 42 225 48 HOH HOH A . C 3 HOH 43 226 49 HOH HOH A . C 3 HOH 44 227 50 HOH HOH A . C 3 HOH 45 228 52 HOH HOH A . C 3 HOH 46 229 54 HOH HOH A . C 3 HOH 47 230 56 HOH HOH A . C 3 HOH 48 231 57 HOH HOH A . C 3 HOH 49 232 58 HOH HOH A . C 3 HOH 50 233 62 HOH HOH A . C 3 HOH 51 234 63 HOH HOH A . C 3 HOH 52 235 6 HOH HOH A . D 3 HOH 1 33 5 HOH HOH B . D 3 HOH 2 42 42 HOH HOH B . D 3 HOH 3 47 47 HOH HOH B . D 3 HOH 4 53 53 HOH HOH B . D 3 HOH 5 55 55 HOH HOH B . D 3 HOH 6 59 59 HOH HOH B . D 3 HOH 7 60 60 HOH HOH B . D 3 HOH 8 61 61 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA 48-meric 48 2 author_defined_assembly ? octameric 8 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 A,B,C,D 2 1,3,21,23 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 128240 ? 1 MORE -985 ? 1 'SSA (A^2)' 171920 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 166.4950000000 0.0000000000 -1.0000000000 0.0000000000 166.4950000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_654 -x+1,y,-z-1 -1.0000000000 0.0000000000 0.0000000000 166.4950000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -166.4950000000 4 'crystal symmetry operation' 4_564 x,-y+1,-z-1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 166.4950000000 0.0000000000 0.0000000000 -1.0000000000 -166.4950000000 5 'crystal symmetry operation' 5_654 z+1,x,y-1 0.0000000000 0.0000000000 1.0000000000 166.4950000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -166.4950000000 6 'crystal symmetry operation' 6_665 z+1,-x+1,-y 0.0000000000 0.0000000000 1.0000000000 166.4950000000 -1.0000000000 0.0000000000 0.0000000000 166.4950000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 7 'crystal symmetry operation' 7_564 -z,-x+1,y-1 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 166.4950000000 0.0000000000 1.0000000000 0.0000000000 -166.4950000000 8 'crystal symmetry operation' 8_555 -z,x,-y 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 9 'crystal symmetry operation' 9_564 y,z+1,x-1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 166.4950000000 1.0000000000 0.0000000000 0.0000000000 -166.4950000000 10 'crystal symmetry operation' 10_665 -y+1,z+1,-x 0.0000000000 -1.0000000000 0.0000000000 166.4950000000 0.0000000000 0.0000000000 1.0000000000 166.4950000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 11 'crystal symmetry operation' 11_555 y,-z,-x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 12 'crystal symmetry operation' 12_654 -y+1,-z,x-1 0.0000000000 -1.0000000000 0.0000000000 166.4950000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -166.4950000000 13 'crystal symmetry operation' 13_554 y,x,-z-1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -166.4950000000 14 'crystal symmetry operation' 14_664 -y+1,-x+1,-z-1 0.0000000000 -1.0000000000 0.0000000000 166.4950000000 -1.0000000000 0.0000000000 0.0000000000 166.4950000000 0.0000000000 0.0000000000 -1.0000000000 -166.4950000000 15 'crystal symmetry operation' 15_565 y,-x+1,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 166.4950000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 16 'crystal symmetry operation' 16_655 -y+1,x,z 0.0000000000 -1.0000000000 0.0000000000 166.4950000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 17 'crystal symmetry operation' 17_565 x,z+1,-y 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 166.4950000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 18 'crystal symmetry operation' 18_664 -x+1,z+1,y-1 -1.0000000000 0.0000000000 0.0000000000 166.4950000000 0.0000000000 0.0000000000 1.0000000000 166.4950000000 0.0000000000 1.0000000000 0.0000000000 -166.4950000000 19 'crystal symmetry operation' 19_655 -x+1,-z,-y -1.0000000000 0.0000000000 0.0000000000 166.4950000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 20 'crystal symmetry operation' 20_554 x,-z,y-1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -166.4950000000 21 'crystal symmetry operation' 21_655 z+1,y,-x 0.0000000000 0.0000000000 1.0000000000 166.4950000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 22 'crystal symmetry operation' 22_664 z+1,-y+1,x-1 0.0000000000 0.0000000000 1.0000000000 166.4950000000 0.0000000000 -1.0000000000 0.0000000000 166.4950000000 1.0000000000 0.0000000000 0.0000000000 -166.4950000000 23 'crystal symmetry operation' 23_554 -z,y,x-1 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -166.4950000000 24 'crystal symmetry operation' 24_565 -z,-y+1,-x 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 166.4950000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-08-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-07-17 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 3 'Structure model' '_software.version' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(phenix.refine)' ? 1 PHENIX 'model building' . ? 2 CNS refinement . ? 3 CBASS 'data collection' . ? 4 HKL-2000 'data reduction' . ? 5 HKL-2000 'data scaling' . ? 6 PHENIX phasing . ? 7 CNS phasing . ? 8 # _pdbx_entry_details.entry_id 3N1J _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE SEQUENCE OF THE CRYSTALLIZED DNA IS A 32-MER OLIGONUCLEOTIDE WITH SEQUENCE TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT. ONLY 9 RESIDUES WERE MODELED IN THE COORDINATES OF THE ASYMMETRIC UNIT. ACCORDING TO THE AUTHORS, THE 32-MER DNA BINDS A TETRAMER THAT INCLUDE FOUR MONOMERS OF FOUR ASYMMETRIC UNITS; THE STWHY2-DNA BINDING IS NOT SEQUENCE SPECIFIC THUS EACH TETRAMERIC PROTEIN BINDS A 32-MER DNA IN DIFFERENT SEQUENCE REGISTERS; AS A RESULT ONLY THREE OF THE FOUR DNA-BINDING SITES OF EACH TETRAMER WOULD BE PHYSICALLY OCCUPIED BY THE DNA. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 DT _pdbx_validate_rmsd_angle.auth_seq_id_1 8 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 DT _pdbx_validate_rmsd_angle.auth_seq_id_2 8 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 DT _pdbx_validate_rmsd_angle.auth_seq_id_3 8 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 111.18 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.88 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 90 ? ? -99.01 -84.13 2 1 ARG A 106 ? ? 37.99 51.18 3 1 LYS A 112 ? ? -94.70 30.15 4 1 SER A 142 ? ? -98.21 47.59 5 1 LEU A 144 ? ? 59.05 4.65 6 1 SER A 164 ? ? -81.26 30.60 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 47 ? A MET 1 2 1 Y 1 A ALA 48 ? A ALA 2 3 1 Y 1 A ASP 49 ? A ASP 3 4 1 Y 1 A ALA 50 ? A ALA 4 5 1 Y 1 A GLY 51 ? A GLY 5 6 1 Y 1 A LYS 52 ? A LYS 6 7 1 Y 1 A ARG 53 ? A ARG 7 8 1 Y 1 A GLU 54 ? A GLU 8 9 1 Y 1 A PRO 216 ? A PRO 170 10 1 Y 1 A LEU 217 ? A LEU 171 11 1 Y 1 A GLU 218 ? A GLU 172 12 1 Y 1 A HIS 219 ? A HIS 173 13 1 Y 1 A HIS 220 ? A HIS 174 14 1 Y 1 A HIS 221 ? A HIS 175 15 1 Y 1 A HIS 222 ? A HIS 176 16 1 Y 1 A HIS 223 ? A HIS 177 17 1 Y 1 A HIS 224 ? A HIS 178 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DT OP3 O N N 74 DT P P N N 75 DT OP1 O N N 76 DT OP2 O N N 77 DT "O5'" O N N 78 DT "C5'" C N N 79 DT "C4'" C N R 80 DT "O4'" O N N 81 DT "C3'" C N S 82 DT "O3'" O N N 83 DT "C2'" C N N 84 DT "C1'" C N R 85 DT N1 N N N 86 DT C2 C N N 87 DT O2 O N N 88 DT N3 N N N 89 DT C4 C N N 90 DT O4 O N N 91 DT C5 C N N 92 DT C7 C N N 93 DT C6 C N N 94 DT HOP3 H N N 95 DT HOP2 H N N 96 DT "H5'" H N N 97 DT "H5''" H N N 98 DT "H4'" H N N 99 DT "H3'" H N N 100 DT "HO3'" H N N 101 DT "H2'" H N N 102 DT "H2''" H N N 103 DT "H1'" H N N 104 DT H3 H N N 105 DT H71 H N N 106 DT H72 H N N 107 DT H73 H N N 108 DT H6 H N N 109 GLN N N N N 110 GLN CA C N S 111 GLN C C N N 112 GLN O O N N 113 GLN CB C N N 114 GLN CG C N N 115 GLN CD C N N 116 GLN OE1 O N N 117 GLN NE2 N N N 118 GLN OXT O N N 119 GLN H H N N 120 GLN H2 H N N 121 GLN HA H N N 122 GLN HB2 H N N 123 GLN HB3 H N N 124 GLN HG2 H N N 125 GLN HG3 H N N 126 GLN HE21 H N N 127 GLN HE22 H N N 128 GLN HXT H N N 129 GLU N N N N 130 GLU CA C N S 131 GLU C C N N 132 GLU O O N N 133 GLU CB C N N 134 GLU CG C N N 135 GLU CD C N N 136 GLU OE1 O N N 137 GLU OE2 O N N 138 GLU OXT O N N 139 GLU H H N N 140 GLU H2 H N N 141 GLU HA H N N 142 GLU HB2 H N N 143 GLU HB3 H N N 144 GLU HG2 H N N 145 GLU HG3 H N N 146 GLU HE2 H N N 147 GLU HXT H N N 148 GLY N N N N 149 GLY CA C N N 150 GLY C C N N 151 GLY O O N N 152 GLY OXT O N N 153 GLY H H N N 154 GLY H2 H N N 155 GLY HA2 H N N 156 GLY HA3 H N N 157 GLY HXT H N N 158 HIS N N N N 159 HIS CA C N S 160 HIS C C N N 161 HIS O O N N 162 HIS CB C N N 163 HIS CG C Y N 164 HIS ND1 N Y N 165 HIS CD2 C Y N 166 HIS CE1 C Y N 167 HIS NE2 N Y N 168 HIS OXT O N N 169 HIS H H N N 170 HIS H2 H N N 171 HIS HA H N N 172 HIS HB2 H N N 173 HIS HB3 H N N 174 HIS HD1 H N N 175 HIS HD2 H N N 176 HIS HE1 H N N 177 HIS HE2 H N N 178 HIS HXT H N N 179 HOH O O N N 180 HOH H1 H N N 181 HOH H2 H N N 182 ILE N N N N 183 ILE CA C N S 184 ILE C C N N 185 ILE O O N N 186 ILE CB C N S 187 ILE CG1 C N N 188 ILE CG2 C N N 189 ILE CD1 C N N 190 ILE OXT O N N 191 ILE H H N N 192 ILE H2 H N N 193 ILE HA H N N 194 ILE HB H N N 195 ILE HG12 H N N 196 ILE HG13 H N N 197 ILE HG21 H N N 198 ILE HG22 H N N 199 ILE HG23 H N N 200 ILE HD11 H N N 201 ILE HD12 H N N 202 ILE HD13 H N N 203 ILE HXT H N N 204 LEU N N N N 205 LEU CA C N S 206 LEU C C N N 207 LEU O O N N 208 LEU CB C N N 209 LEU CG C N N 210 LEU CD1 C N N 211 LEU CD2 C N N 212 LEU OXT O N N 213 LEU H H N N 214 LEU H2 H N N 215 LEU HA H N N 216 LEU HB2 H N N 217 LEU HB3 H N N 218 LEU HG H N N 219 LEU HD11 H N N 220 LEU HD12 H N N 221 LEU HD13 H N N 222 LEU HD21 H N N 223 LEU HD22 H N N 224 LEU HD23 H N N 225 LEU HXT H N N 226 LYS N N N N 227 LYS CA C N S 228 LYS C C N N 229 LYS O O N N 230 LYS CB C N N 231 LYS CG C N N 232 LYS CD C N N 233 LYS CE C N N 234 LYS NZ N N N 235 LYS OXT O N N 236 LYS H H N N 237 LYS H2 H N N 238 LYS HA H N N 239 LYS HB2 H N N 240 LYS HB3 H N N 241 LYS HG2 H N N 242 LYS HG3 H N N 243 LYS HD2 H N N 244 LYS HD3 H N N 245 LYS HE2 H N N 246 LYS HE3 H N N 247 LYS HZ1 H N N 248 LYS HZ2 H N N 249 LYS HZ3 H N N 250 LYS HXT H N N 251 MET N N N N 252 MET CA C N S 253 MET C C N N 254 MET O O N N 255 MET CB C N N 256 MET CG C N N 257 MET SD S N N 258 MET CE C N N 259 MET OXT O N N 260 MET H H N N 261 MET H2 H N N 262 MET HA H N N 263 MET HB2 H N N 264 MET HB3 H N N 265 MET HG2 H N N 266 MET HG3 H N N 267 MET HE1 H N N 268 MET HE2 H N N 269 MET HE3 H N N 270 MET HXT H N N 271 PHE N N N N 272 PHE CA C N S 273 PHE C C N N 274 PHE O O N N 275 PHE CB C N N 276 PHE CG C Y N 277 PHE CD1 C Y N 278 PHE CD2 C Y N 279 PHE CE1 C Y N 280 PHE CE2 C Y N 281 PHE CZ C Y N 282 PHE OXT O N N 283 PHE H H N N 284 PHE H2 H N N 285 PHE HA H N N 286 PHE HB2 H N N 287 PHE HB3 H N N 288 PHE HD1 H N N 289 PHE HD2 H N N 290 PHE HE1 H N N 291 PHE HE2 H N N 292 PHE HZ H N N 293 PHE HXT H N N 294 PRO N N N N 295 PRO CA C N S 296 PRO C C N N 297 PRO O O N N 298 PRO CB C N N 299 PRO CG C N N 300 PRO CD C N N 301 PRO OXT O N N 302 PRO H H N N 303 PRO HA H N N 304 PRO HB2 H N N 305 PRO HB3 H N N 306 PRO HG2 H N N 307 PRO HG3 H N N 308 PRO HD2 H N N 309 PRO HD3 H N N 310 PRO HXT H N N 311 SER N N N N 312 SER CA C N S 313 SER C C N N 314 SER O O N N 315 SER CB C N N 316 SER OG O N N 317 SER OXT O N N 318 SER H H N N 319 SER H2 H N N 320 SER HA H N N 321 SER HB2 H N N 322 SER HB3 H N N 323 SER HG H N N 324 SER HXT H N N 325 THR N N N N 326 THR CA C N S 327 THR C C N N 328 THR O O N N 329 THR CB C N R 330 THR OG1 O N N 331 THR CG2 C N N 332 THR OXT O N N 333 THR H H N N 334 THR H2 H N N 335 THR HA H N N 336 THR HB H N N 337 THR HG1 H N N 338 THR HG21 H N N 339 THR HG22 H N N 340 THR HG23 H N N 341 THR HXT H N N 342 TRP N N N N 343 TRP CA C N S 344 TRP C C N N 345 TRP O O N N 346 TRP CB C N N 347 TRP CG C Y N 348 TRP CD1 C Y N 349 TRP CD2 C Y N 350 TRP NE1 N Y N 351 TRP CE2 C Y N 352 TRP CE3 C Y N 353 TRP CZ2 C Y N 354 TRP CZ3 C Y N 355 TRP CH2 C Y N 356 TRP OXT O N N 357 TRP H H N N 358 TRP H2 H N N 359 TRP HA H N N 360 TRP HB2 H N N 361 TRP HB3 H N N 362 TRP HD1 H N N 363 TRP HE1 H N N 364 TRP HE3 H N N 365 TRP HZ2 H N N 366 TRP HZ3 H N N 367 TRP HH2 H N N 368 TRP HXT H N N 369 TYR N N N N 370 TYR CA C N S 371 TYR C C N N 372 TYR O O N N 373 TYR CB C N N 374 TYR CG C Y N 375 TYR CD1 C Y N 376 TYR CD2 C Y N 377 TYR CE1 C Y N 378 TYR CE2 C Y N 379 TYR CZ C Y N 380 TYR OH O N N 381 TYR OXT O N N 382 TYR H H N N 383 TYR H2 H N N 384 TYR HA H N N 385 TYR HB2 H N N 386 TYR HB3 H N N 387 TYR HD1 H N N 388 TYR HD2 H N N 389 TYR HE1 H N N 390 TYR HE2 H N N 391 TYR HH H N N 392 TYR HXT H N N 393 VAL N N N N 394 VAL CA C N S 395 VAL C C N N 396 VAL O O N N 397 VAL CB C N N 398 VAL CG1 C N N 399 VAL CG2 C N N 400 VAL OXT O N N 401 VAL H H N N 402 VAL H2 H N N 403 VAL HA H N N 404 VAL HB H N N 405 VAL HG11 H N N 406 VAL HG12 H N N 407 VAL HG13 H N N 408 VAL HG21 H N N 409 VAL HG22 H N N 410 VAL HG23 H N N 411 VAL HXT H N N 412 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DT OP3 P sing N N 70 DT OP3 HOP3 sing N N 71 DT P OP1 doub N N 72 DT P OP2 sing N N 73 DT P "O5'" sing N N 74 DT OP2 HOP2 sing N N 75 DT "O5'" "C5'" sing N N 76 DT "C5'" "C4'" sing N N 77 DT "C5'" "H5'" sing N N 78 DT "C5'" "H5''" sing N N 79 DT "C4'" "O4'" sing N N 80 DT "C4'" "C3'" sing N N 81 DT "C4'" "H4'" sing N N 82 DT "O4'" "C1'" sing N N 83 DT "C3'" "O3'" sing N N 84 DT "C3'" "C2'" sing N N 85 DT "C3'" "H3'" sing N N 86 DT "O3'" "HO3'" sing N N 87 DT "C2'" "C1'" sing N N 88 DT "C2'" "H2'" sing N N 89 DT "C2'" "H2''" sing N N 90 DT "C1'" N1 sing N N 91 DT "C1'" "H1'" sing N N 92 DT N1 C2 sing N N 93 DT N1 C6 sing N N 94 DT C2 O2 doub N N 95 DT C2 N3 sing N N 96 DT N3 C4 sing N N 97 DT N3 H3 sing N N 98 DT C4 O4 doub N N 99 DT C4 C5 sing N N 100 DT C5 C7 sing N N 101 DT C5 C6 doub N N 102 DT C7 H71 sing N N 103 DT C7 H72 sing N N 104 DT C7 H73 sing N N 105 DT C6 H6 sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 HOH O H1 sing N N 174 HOH O H2 sing N N 175 ILE N CA sing N N 176 ILE N H sing N N 177 ILE N H2 sing N N 178 ILE CA C sing N N 179 ILE CA CB sing N N 180 ILE CA HA sing N N 181 ILE C O doub N N 182 ILE C OXT sing N N 183 ILE CB CG1 sing N N 184 ILE CB CG2 sing N N 185 ILE CB HB sing N N 186 ILE CG1 CD1 sing N N 187 ILE CG1 HG12 sing N N 188 ILE CG1 HG13 sing N N 189 ILE CG2 HG21 sing N N 190 ILE CG2 HG22 sing N N 191 ILE CG2 HG23 sing N N 192 ILE CD1 HD11 sing N N 193 ILE CD1 HD12 sing N N 194 ILE CD1 HD13 sing N N 195 ILE OXT HXT sing N N 196 LEU N CA sing N N 197 LEU N H sing N N 198 LEU N H2 sing N N 199 LEU CA C sing N N 200 LEU CA CB sing N N 201 LEU CA HA sing N N 202 LEU C O doub N N 203 LEU C OXT sing N N 204 LEU CB CG sing N N 205 LEU CB HB2 sing N N 206 LEU CB HB3 sing N N 207 LEU CG CD1 sing N N 208 LEU CG CD2 sing N N 209 LEU CG HG sing N N 210 LEU CD1 HD11 sing N N 211 LEU CD1 HD12 sing N N 212 LEU CD1 HD13 sing N N 213 LEU CD2 HD21 sing N N 214 LEU CD2 HD22 sing N N 215 LEU CD2 HD23 sing N N 216 LEU OXT HXT sing N N 217 LYS N CA sing N N 218 LYS N H sing N N 219 LYS N H2 sing N N 220 LYS CA C sing N N 221 LYS CA CB sing N N 222 LYS CA HA sing N N 223 LYS C O doub N N 224 LYS C OXT sing N N 225 LYS CB CG sing N N 226 LYS CB HB2 sing N N 227 LYS CB HB3 sing N N 228 LYS CG CD sing N N 229 LYS CG HG2 sing N N 230 LYS CG HG3 sing N N 231 LYS CD CE sing N N 232 LYS CD HD2 sing N N 233 LYS CD HD3 sing N N 234 LYS CE NZ sing N N 235 LYS CE HE2 sing N N 236 LYS CE HE3 sing N N 237 LYS NZ HZ1 sing N N 238 LYS NZ HZ2 sing N N 239 LYS NZ HZ3 sing N N 240 LYS OXT HXT sing N N 241 MET N CA sing N N 242 MET N H sing N N 243 MET N H2 sing N N 244 MET CA C sing N N 245 MET CA CB sing N N 246 MET CA HA sing N N 247 MET C O doub N N 248 MET C OXT sing N N 249 MET CB CG sing N N 250 MET CB HB2 sing N N 251 MET CB HB3 sing N N 252 MET CG SD sing N N 253 MET CG HG2 sing N N 254 MET CG HG3 sing N N 255 MET SD CE sing N N 256 MET CE HE1 sing N N 257 MET CE HE2 sing N N 258 MET CE HE3 sing N N 259 MET OXT HXT sing N N 260 PHE N CA sing N N 261 PHE N H sing N N 262 PHE N H2 sing N N 263 PHE CA C sing N N 264 PHE CA CB sing N N 265 PHE CA HA sing N N 266 PHE C O doub N N 267 PHE C OXT sing N N 268 PHE CB CG sing N N 269 PHE CB HB2 sing N N 270 PHE CB HB3 sing N N 271 PHE CG CD1 doub Y N 272 PHE CG CD2 sing Y N 273 PHE CD1 CE1 sing Y N 274 PHE CD1 HD1 sing N N 275 PHE CD2 CE2 doub Y N 276 PHE CD2 HD2 sing N N 277 PHE CE1 CZ doub Y N 278 PHE CE1 HE1 sing N N 279 PHE CE2 CZ sing Y N 280 PHE CE2 HE2 sing N N 281 PHE CZ HZ sing N N 282 PHE OXT HXT sing N N 283 PRO N CA sing N N 284 PRO N CD sing N N 285 PRO N H sing N N 286 PRO CA C sing N N 287 PRO CA CB sing N N 288 PRO CA HA sing N N 289 PRO C O doub N N 290 PRO C OXT sing N N 291 PRO CB CG sing N N 292 PRO CB HB2 sing N N 293 PRO CB HB3 sing N N 294 PRO CG CD sing N N 295 PRO CG HG2 sing N N 296 PRO CG HG3 sing N N 297 PRO CD HD2 sing N N 298 PRO CD HD3 sing N N 299 PRO OXT HXT sing N N 300 SER N CA sing N N 301 SER N H sing N N 302 SER N H2 sing N N 303 SER CA C sing N N 304 SER CA CB sing N N 305 SER CA HA sing N N 306 SER C O doub N N 307 SER C OXT sing N N 308 SER CB OG sing N N 309 SER CB HB2 sing N N 310 SER CB HB3 sing N N 311 SER OG HG sing N N 312 SER OXT HXT sing N N 313 THR N CA sing N N 314 THR N H sing N N 315 THR N H2 sing N N 316 THR CA C sing N N 317 THR CA CB sing N N 318 THR CA HA sing N N 319 THR C O doub N N 320 THR C OXT sing N N 321 THR CB OG1 sing N N 322 THR CB CG2 sing N N 323 THR CB HB sing N N 324 THR OG1 HG1 sing N N 325 THR CG2 HG21 sing N N 326 THR CG2 HG22 sing N N 327 THR CG2 HG23 sing N N 328 THR OXT HXT sing N N 329 TRP N CA sing N N 330 TRP N H sing N N 331 TRP N H2 sing N N 332 TRP CA C sing N N 333 TRP CA CB sing N N 334 TRP CA HA sing N N 335 TRP C O doub N N 336 TRP C OXT sing N N 337 TRP CB CG sing N N 338 TRP CB HB2 sing N N 339 TRP CB HB3 sing N N 340 TRP CG CD1 doub Y N 341 TRP CG CD2 sing Y N 342 TRP CD1 NE1 sing Y N 343 TRP CD1 HD1 sing N N 344 TRP CD2 CE2 doub Y N 345 TRP CD2 CE3 sing Y N 346 TRP NE1 CE2 sing Y N 347 TRP NE1 HE1 sing N N 348 TRP CE2 CZ2 sing Y N 349 TRP CE3 CZ3 doub Y N 350 TRP CE3 HE3 sing N N 351 TRP CZ2 CH2 doub Y N 352 TRP CZ2 HZ2 sing N N 353 TRP CZ3 CH2 sing Y N 354 TRP CZ3 HZ3 sing N N 355 TRP CH2 HH2 sing N N 356 TRP OXT HXT sing N N 357 TYR N CA sing N N 358 TYR N H sing N N 359 TYR N H2 sing N N 360 TYR CA C sing N N 361 TYR CA CB sing N N 362 TYR CA HA sing N N 363 TYR C O doub N N 364 TYR C OXT sing N N 365 TYR CB CG sing N N 366 TYR CB HB2 sing N N 367 TYR CB HB3 sing N N 368 TYR CG CD1 doub Y N 369 TYR CG CD2 sing Y N 370 TYR CD1 CE1 sing Y N 371 TYR CD1 HD1 sing N N 372 TYR CD2 CE2 doub Y N 373 TYR CD2 HD2 sing N N 374 TYR CE1 CZ doub Y N 375 TYR CE1 HE1 sing N N 376 TYR CE2 CZ sing Y N 377 TYR CE2 HE2 sing N N 378 TYR CZ OH sing N N 379 TYR OH HH sing N N 380 TYR OXT HXT sing N N 381 VAL N CA sing N N 382 VAL N H sing N N 383 VAL N H2 sing N N 384 VAL CA C sing N N 385 VAL CA CB sing N N 386 VAL CA HA sing N N 387 VAL C O doub N N 388 VAL C OXT sing N N 389 VAL CB CG1 sing N N 390 VAL CB CG2 sing N N 391 VAL CB HB sing N N 392 VAL CG1 HG11 sing N N 393 VAL CG1 HG12 sing N N 394 VAL CG1 HG13 sing N N 395 VAL CG2 HG21 sing N N 396 VAL CG2 HG22 sing N N 397 VAL CG2 HG23 sing N N 398 VAL OXT HXT sing N N 399 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1L3A _pdbx_initial_refinement_model.details 'PDB ENTRY 1L3A' #