data_3N3I # _entry.id 3N3I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3N3I pdb_00003n3i 10.2210/pdb3n3i/pdb RCSB RCSB059333 ? ? WWPDB D_1000059333 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-12-12 4 'Structure model' 1 3 2017-08-09 5 'Structure model' 1 4 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' Other 8 4 'Structure model' 'Source and taxonomy' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Database references' 11 5 'Structure model' 'Derived calculations' 12 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_src_gen 2 5 'Structure model' chem_comp 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' entity 7 5 'Structure model' pdbx_entity_nonpoly 8 5 'Structure model' struct_ref_seq_dif 9 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_chem_comp.name' 2 5 'Structure model' '_chem_comp.pdbx_synonyms' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_entity.pdbx_description' 6 5 'Structure model' '_pdbx_entity_nonpoly.name' 7 5 'Structure model' '_struct_ref_seq_dif.details' 8 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3N3I _pdbx_database_status.recvd_initial_deposition_date 2010-05-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Prashar, V.' 1 'Bihani, S.C.' 2 'Das, A.' 3 'Rao, D.R.' 4 'Hosur, M.V.' 5 # _citation.id primary _citation.title ;Insights into the mechanism of drug resistance: X-ray structure analysis of G48V/C95F tethered HIV-1 protease dimer/saquinavir complex ; _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_volume 396 _citation.page_first 1018 _citation.page_last 1023 _citation.year 2010 _citation.journal_id_ASTM BBRCA9 _citation.country US _citation.journal_id_ISSN 0006-291X _citation.journal_id_CSD 0146 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20471372 _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2010.05.049 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Prashar, V.' 1 ? primary 'Bihani, S.C.' 2 ? primary 'Das, A.' 3 ? primary 'Rao, D.R.' 4 ? primary 'Hosur, M.V.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Protease 22078.994 1 3.4.23.16 'G48V, G1048V, C95F, C1095F' 'UNP residues 489-587' ;Chimera protein with LINKER Gly-Gly-Ser-Ser-Gly (numbered A100 to A104) that covalently link sub-unit A with sub-unit B in the tethered dimer. ; 2 non-polymer syn ;(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide ; 670.841 1 ? ? ? ? 3 water nat water 18.015 60 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Retropepsin, PR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIVGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGFTLNFGGSSGPQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIVGIGGFIKV RQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGFTLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIVGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGFTLNFGGSSGPQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIVGIGGFIKV RQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGFTLNF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide ; ROC 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 VAL n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 GLN n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 LEU n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 VAL n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 LEU n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 CYS n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 PHE n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n 1 100 GLY n 1 101 GLY n 1 102 SER n 1 103 SER n 1 104 GLY n 1 105 PRO n 1 106 GLN n 1 107 VAL n 1 108 THR n 1 109 LEU n 1 110 TRP n 1 111 GLN n 1 112 ARG n 1 113 PRO n 1 114 LEU n 1 115 VAL n 1 116 THR n 1 117 ILE n 1 118 LYS n 1 119 ILE n 1 120 GLY n 1 121 GLY n 1 122 GLN n 1 123 LEU n 1 124 LYS n 1 125 GLU n 1 126 ALA n 1 127 LEU n 1 128 LEU n 1 129 ASP n 1 130 THR n 1 131 GLY n 1 132 ALA n 1 133 ASP n 1 134 ASP n 1 135 THR n 1 136 VAL n 1 137 LEU n 1 138 GLU n 1 139 GLU n 1 140 MET n 1 141 SER n 1 142 LEU n 1 143 PRO n 1 144 GLY n 1 145 ARG n 1 146 TRP n 1 147 LYS n 1 148 PRO n 1 149 LYS n 1 150 MET n 1 151 ILE n 1 152 VAL n 1 153 GLY n 1 154 ILE n 1 155 GLY n 1 156 GLY n 1 157 PHE n 1 158 ILE n 1 159 LYS n 1 160 VAL n 1 161 ARG n 1 162 GLN n 1 163 TYR n 1 164 ASP n 1 165 GLN n 1 166 ILE n 1 167 LEU n 1 168 ILE n 1 169 GLU n 1 170 ILE n 1 171 CYS n 1 172 GLY n 1 173 HIS n 1 174 LYS n 1 175 ALA n 1 176 ILE n 1 177 GLY n 1 178 THR n 1 179 VAL n 1 180 LEU n 1 181 VAL n 1 182 GLY n 1 183 PRO n 1 184 THR n 1 185 PRO n 1 186 VAL n 1 187 ASN n 1 188 ILE n 1 189 ILE n 1 190 GLY n 1 191 ARG n 1 192 ASN n 1 193 LEU n 1 194 LEU n 1 195 THR n 1 196 GLN n 1 197 ILE n 1 198 GLY n 1 199 PHE n 1 200 THR n 1 201 LEU n 1 202 ASN n 1 203 PHE n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 1 99 HIV-1 ? gag-pol ? 'group M subtype B (isolate HXB2)' ? ? ? ? 'Human immunodeficiency virus type 1' 11706 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET11A ? ? 1 2 sample ? 105 203 HIV-1 ? gag-pol ? 'group M subtype B (isolate HXB2)' ? ? ? ? 'Human immunodeficiency virus type 1' 11706 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET11A ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 ROC peptide-like . ;(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide ; 'Fortovase; SAQUINAVIR; RO 31-8959' 'C38 H50 N6 O5' 670.841 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 GLY 100 100 ? ? ? A . n A 1 101 GLY 101 101 ? ? ? A . n A 1 102 SER 102 102 ? ? ? A . n A 1 103 SER 103 103 ? ? ? A . n A 1 104 GLY 104 104 ? ? ? A . n A 1 105 PRO 105 1001 1001 PRO PRO A . n A 1 106 GLN 106 1002 1002 GLN GLN A . n A 1 107 VAL 107 1003 1003 VAL VAL A . n A 1 108 THR 108 1004 1004 THR THR A . n A 1 109 LEU 109 1005 1005 LEU LEU A . n A 1 110 TRP 110 1006 1006 TRP TRP A . n A 1 111 GLN 111 1007 1007 GLN GLN A . n A 1 112 ARG 112 1008 1008 ARG ARG A . n A 1 113 PRO 113 1009 1009 PRO PRO A . n A 1 114 LEU 114 1010 1010 LEU LEU A . n A 1 115 VAL 115 1011 1011 VAL VAL A . n A 1 116 THR 116 1012 1012 THR THR A . n A 1 117 ILE 117 1013 1013 ILE ILE A . n A 1 118 LYS 118 1014 1014 LYS LYS A . n A 1 119 ILE 119 1015 1015 ILE ILE A . n A 1 120 GLY 120 1016 1016 GLY GLY A . n A 1 121 GLY 121 1017 1017 GLY GLY A . n A 1 122 GLN 122 1018 1018 GLN GLN A . n A 1 123 LEU 123 1019 1019 LEU LEU A . n A 1 124 LYS 124 1020 1020 LYS LYS A . n A 1 125 GLU 125 1021 1021 GLU GLU A . n A 1 126 ALA 126 1022 1022 ALA ALA A . n A 1 127 LEU 127 1023 1023 LEU LEU A . n A 1 128 LEU 128 1024 1024 LEU LEU A . n A 1 129 ASP 129 1025 1025 ASP ASP A . n A 1 130 THR 130 1026 1026 THR THR A . n A 1 131 GLY 131 1027 1027 GLY GLY A . n A 1 132 ALA 132 1028 1028 ALA ALA A . n A 1 133 ASP 133 1029 1029 ASP ASP A . n A 1 134 ASP 134 1030 1030 ASP ASP A . n A 1 135 THR 135 1031 1031 THR THR A . n A 1 136 VAL 136 1032 1032 VAL VAL A . n A 1 137 LEU 137 1033 1033 LEU LEU A . n A 1 138 GLU 138 1034 1034 GLU GLU A . n A 1 139 GLU 139 1035 1035 GLU GLU A . n A 1 140 MET 140 1036 1036 MET MET A . n A 1 141 SER 141 1037 1037 SER SER A . n A 1 142 LEU 142 1038 1038 LEU LEU A . n A 1 143 PRO 143 1039 1039 PRO PRO A . n A 1 144 GLY 144 1040 1040 GLY GLY A . n A 1 145 ARG 145 1041 1041 ARG ARG A . n A 1 146 TRP 146 1042 1042 TRP TRP A . n A 1 147 LYS 147 1043 1043 LYS LYS A . n A 1 148 PRO 148 1044 1044 PRO PRO A . n A 1 149 LYS 149 1045 1045 LYS LYS A . n A 1 150 MET 150 1046 1046 MET MET A . n A 1 151 ILE 151 1047 1047 ILE ILE A . n A 1 152 VAL 152 1048 1048 VAL VAL A . n A 1 153 GLY 153 1049 1049 GLY GLY A . n A 1 154 ILE 154 1050 1050 ILE ILE A . n A 1 155 GLY 155 1051 1051 GLY GLY A . n A 1 156 GLY 156 1052 1052 GLY GLY A . n A 1 157 PHE 157 1053 1053 PHE PHE A . n A 1 158 ILE 158 1054 1054 ILE ILE A . n A 1 159 LYS 159 1055 1055 LYS LYS A . n A 1 160 VAL 160 1056 1056 VAL VAL A . n A 1 161 ARG 161 1057 1057 ARG ARG A . n A 1 162 GLN 162 1058 1058 GLN GLN A . n A 1 163 TYR 163 1059 1059 TYR TYR A . n A 1 164 ASP 164 1060 1060 ASP ASP A . n A 1 165 GLN 165 1061 1061 GLN GLN A . n A 1 166 ILE 166 1062 1062 ILE ILE A . n A 1 167 LEU 167 1063 1063 LEU LEU A . n A 1 168 ILE 168 1064 1064 ILE ILE A . n A 1 169 GLU 169 1065 1065 GLU GLU A . n A 1 170 ILE 170 1066 1066 ILE ILE A . n A 1 171 CYS 171 1067 1067 CYS CYS A . n A 1 172 GLY 172 1068 1068 GLY GLY A . n A 1 173 HIS 173 1069 1069 HIS HIS A . n A 1 174 LYS 174 1070 1070 LYS LYS A . n A 1 175 ALA 175 1071 1071 ALA ALA A . n A 1 176 ILE 176 1072 1072 ILE ILE A . n A 1 177 GLY 177 1073 1073 GLY GLY A . n A 1 178 THR 178 1074 1074 THR THR A . n A 1 179 VAL 179 1075 1075 VAL VAL A . n A 1 180 LEU 180 1076 1076 LEU LEU A . n A 1 181 VAL 181 1077 1077 VAL VAL A . n A 1 182 GLY 182 1078 1078 GLY GLY A . n A 1 183 PRO 183 1079 1079 PRO PRO A . n A 1 184 THR 184 1080 1080 THR THR A . n A 1 185 PRO 185 1081 1081 PRO PRO A . n A 1 186 VAL 186 1082 1082 VAL VAL A . n A 1 187 ASN 187 1083 1083 ASN ASN A . n A 1 188 ILE 188 1084 1084 ILE ILE A . n A 1 189 ILE 189 1085 1085 ILE ILE A . n A 1 190 GLY 190 1086 1086 GLY GLY A . n A 1 191 ARG 191 1087 1087 ARG ARG A . n A 1 192 ASN 192 1088 1088 ASN ASN A . n A 1 193 LEU 193 1089 1089 LEU LEU A . n A 1 194 LEU 194 1090 1090 LEU LEU A . n A 1 195 THR 195 1091 1091 THR THR A . n A 1 196 GLN 196 1092 1092 GLN GLN A . n A 1 197 ILE 197 1093 1093 ILE ILE A . n A 1 198 GLY 198 1094 1094 GLY GLY A . n A 1 199 PHE 199 1095 1095 PHE PHE A . n A 1 200 THR 200 1096 1096 THR THR A . n A 1 201 LEU 201 1097 1097 LEU LEU A . n A 1 202 ASN 202 1098 1098 ASN ASN A . n A 1 203 PHE 203 1099 1099 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ROC 1 201 201 ROC ROC A . C 3 HOH 1 1100 1 HOH WAT A . C 3 HOH 2 1101 2 HOH WAT A . C 3 HOH 3 1102 3 HOH WAT A . C 3 HOH 4 1103 4 HOH WAT A . C 3 HOH 5 1104 5 HOH WAT A . C 3 HOH 6 1105 6 HOH WAT A . C 3 HOH 7 1106 7 HOH WAT A . C 3 HOH 8 1107 8 HOH WAT A . C 3 HOH 9 1108 9 HOH WAT A . C 3 HOH 10 1109 10 HOH WAT A . C 3 HOH 11 1110 11 HOH WAT A . C 3 HOH 12 1111 12 HOH WAT A . C 3 HOH 13 1112 13 HOH WAT A . C 3 HOH 14 1113 14 HOH WAT A . C 3 HOH 15 1114 15 HOH WAT A . C 3 HOH 16 1115 16 HOH WAT A . C 3 HOH 17 1116 17 HOH WAT A . C 3 HOH 18 1117 18 HOH WAT A . C 3 HOH 19 1118 19 HOH WAT A . C 3 HOH 20 1119 20 HOH WAT A . C 3 HOH 21 1120 21 HOH WAT A . C 3 HOH 22 1121 22 HOH WAT A . C 3 HOH 23 1122 23 HOH WAT A . C 3 HOH 24 1123 24 HOH WAT A . C 3 HOH 25 1124 25 HOH WAT A . C 3 HOH 26 1125 26 HOH WAT A . C 3 HOH 27 1126 27 HOH WAT A . C 3 HOH 28 1127 28 HOH WAT A . C 3 HOH 29 1128 29 HOH WAT A . C 3 HOH 30 1129 30 HOH WAT A . C 3 HOH 31 1130 31 HOH WAT A . C 3 HOH 32 1131 32 HOH WAT A . C 3 HOH 33 1132 33 HOH WAT A . C 3 HOH 34 1133 34 HOH WAT A . C 3 HOH 35 1134 35 HOH WAT A . C 3 HOH 36 1135 36 HOH WAT A . C 3 HOH 37 1136 37 HOH WAT A . C 3 HOH 38 1137 1 HOH WAT A . C 3 HOH 39 1138 2 HOH WAT A . C 3 HOH 40 1139 3 HOH WAT A . C 3 HOH 41 1140 6 HOH WAT A . C 3 HOH 42 1141 7 HOH WAT A . C 3 HOH 43 1142 9 HOH WAT A . C 3 HOH 44 1143 10 HOH WAT A . C 3 HOH 45 1144 11 HOH WAT A . C 3 HOH 46 1145 12 HOH WAT A . C 3 HOH 47 1146 19 HOH WAT A . C 3 HOH 48 1147 20 HOH WAT A . C 3 HOH 49 1148 21 HOH WAT A . C 3 HOH 50 1149 22 HOH WAT A . C 3 HOH 51 1150 24 HOH WAT A . C 3 HOH 52 1151 25 HOH WAT A . C 3 HOH 53 1152 26 HOH WAT A . C 3 HOH 54 1153 27 HOH WAT A . C 3 HOH 55 1154 28 HOH WAT A . C 3 HOH 56 1155 30 HOH WAT A . C 3 HOH 57 1156 40 HOH WAT A . C 3 HOH 58 1157 42 HOH WAT A . C 3 HOH 59 1158 47 HOH WAT A . C 3 HOH 60 1159 48 HOH WAT A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(phenix.refine: 1.6_289)' ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 # _cell.entry_id 3N3I _cell.length_a 62.410 _cell.length_b 62.410 _cell.length_c 83.260 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3N3I _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3N3I _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 41.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details '1-5% saturated Ammonium Sulfate, 200/100mM Phosphate/Citrate Buffer, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3N3I _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 32.981 _reflns.d_resolution_high 2.5 _reflns.number_obs 6307 _reflns.number_all 6307 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.2 _reflns.B_iso_Wilson_estimate 39.320 _reflns.pdbx_redundancy 5.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.64 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs 0.455 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.9 _reflns_shell.pdbx_redundancy 6.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 900 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3N3I _refine.ls_number_reflns_obs 6304 _refine.ls_number_reflns_all 6307 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.05 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.981 _refine.ls_d_res_high 2.501 _refine.ls_percent_reflns_obs 98.61 _refine.ls_R_factor_obs 0.2177 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2160 _refine.ls_R_factor_R_free 0.2531 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.57 _refine.ls_number_reflns_R_free 288 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 42.094 _refine.aniso_B[1][1] 2.7529 _refine.aniso_B[2][2] 2.7529 _refine.aniso_B[3][3] -5.5058 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.352 _refine.solvent_model_param_bsol 51.890 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.42 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_max 101.15 _refine.B_iso_min 14.94 _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error 27.840 _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1529 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 1638 _refine_hist.d_res_high 2.501 _refine_hist.d_res_low 32.981 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 1611 'X-RAY DIFFRACTION' ? f_angle_d 1.100 ? ? 2189 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.909 ? ? 606 'X-RAY DIFFRACTION' ? f_chiral_restr 0.066 ? ? 262 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 270 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.5007 3.1502 2974 0.2546 98.00 0.3477 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.1502 32.9838 3042 0.1983 99.00 0.2191 . . 144 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3N3I _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3N3I _struct.title 'Crystal Structure of G48V/C95F tethered HIV-1 Protease/Saquinavir complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3N3I _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'HIV-1 protease, Saquinavir, Drug Resistance, tethered-dimer, fusion protein, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_HV1H2 _struct_ref.pdbx_db_accession P04585 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _struct_ref.pdbx_align_begin 489 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3N3I A 1 ? 99 ? P04585 489 ? 587 ? 1 99 2 1 3N3I A 105 ? 203 ? P04585 489 ? 587 ? 1001 1099 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3N3I VAL A 48 ? UNP P04585 GLY 536 'engineered mutation' 48 1 1 3N3I PHE A 95 ? UNP P04585 CYS 583 'engineered mutation' 95 2 1 3N3I GLY A 100 ? UNP P04585 ? ? linker 100 3 1 3N3I GLY A 101 ? UNP P04585 ? ? linker 101 4 1 3N3I SER A 102 ? UNP P04585 ? ? linker 102 5 1 3N3I SER A 103 ? UNP P04585 ? ? linker 103 6 1 3N3I GLY A 104 ? UNP P04585 ? ? linker 104 7 2 3N3I VAL A 152 ? UNP P04585 GLY 536 'engineered mutation' 1048 8 2 3N3I PHE A 199 ? UNP P04585 CYS 583 'engineered mutation' 1095 9 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? GLY A 94 ? GLY A 86 GLY A 94 1 ? 9 HELX_P HELX_P2 2 GLY A 190 ? THR A 195 ? GLY A 1086 THR A 1091 1 ? 6 HELX_P HELX_P3 3 GLN A 196 ? GLY A 198 ? GLN A 1092 GLY A 1094 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 3 ? D ? 8 ? E ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? parallel D 4 5 ? anti-parallel D 5 6 ? parallel D 6 7 ? anti-parallel D 7 8 ? anti-parallel E 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 A 2 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 A 3 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 A 4 THR A 31 ? LEU A 33 ? THR A 31 LEU A 33 A 5 LYS A 70 ? VAL A 77 ? LYS A 70 VAL A 77 A 6 ARG A 57 ? ILE A 66 ? ARG A 57 ILE A 66 A 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 1 MET A 46 ? GLY A 49 ? MET A 46 GLY A 49 B 2 GLY A 52 ? LYS A 55 ? GLY A 52 LYS A 55 C 1 VAL A 107 ? THR A 108 ? VAL A 1003 THR A 1004 C 2 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 C 3 THR A 200 ? ASN A 202 ? THR A 1096 ASN A 1098 D 1 TRP A 146 ? LYS A 147 ? TRP A 1042 LYS A 1043 D 2 ARG A 161 ? ILE A 170 ? ARG A 1057 ILE A 1066 D 3 LYS A 174 ? GLY A 182 ? LYS A 1070 GLY A 1078 D 4 VAL A 136 ? GLU A 138 ? VAL A 1032 GLU A 1034 D 5 ILE A 188 ? ILE A 189 ? ILE A 1084 ILE A 1085 D 6 GLN A 122 ? LEU A 128 ? GLN A 1018 LEU A 1024 D 7 LEU A 114 ? ILE A 119 ? LEU A 1010 ILE A 1015 D 8 ARG A 161 ? ILE A 170 ? ARG A 1057 ILE A 1066 E 1 MET A 150 ? VAL A 152 ? MET A 1046 VAL A 1048 E 2 PHE A 157 ? LYS A 159 ? PHE A 1053 LYS A 1055 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 13 ? N ILE A 13 O LYS A 20 ? O LYS A 20 A 2 3 N LEU A 23 ? N LEU A 23 O ILE A 85 ? O ILE A 85 A 3 4 O ILE A 84 ? O ILE A 84 N VAL A 32 ? N VAL A 32 A 4 5 N LEU A 33 ? N LEU A 33 O LEU A 76 ? O LEU A 76 A 5 6 O ALA A 71 ? O ALA A 71 N ILE A 64 ? N ILE A 64 A 6 7 O GLU A 65 ? O GLU A 65 N LYS A 14 ? N LYS A 14 B 1 2 N ILE A 47 ? N ILE A 47 O ILE A 54 ? O ILE A 54 C 1 2 O VAL A 107 ? O VAL A 1003 N LEU A 97 ? N LEU A 97 C 2 3 N ASN A 98 ? N ASN A 98 O THR A 200 ? O THR A 1096 D 1 2 N LYS A 147 ? N LYS A 1043 O GLN A 162 ? O GLN A 1058 D 2 3 N ILE A 168 ? N ILE A 1064 O ALA A 175 ? O ALA A 1071 D 3 4 O LEU A 180 ? O LEU A 1076 N LEU A 137 ? N LEU A 1033 D 4 5 N VAL A 136 ? N VAL A 1032 O ILE A 188 ? O ILE A 1084 D 5 6 O ILE A 189 ? O ILE A 1085 N LEU A 127 ? N LEU A 1023 D 6 7 O ALA A 126 ? O ALA A 1022 N VAL A 115 ? N VAL A 1011 D 7 8 N LYS A 118 ? N LYS A 1014 O GLU A 169 ? O GLU A 1065 E 1 2 N ILE A 151 ? N ILE A 1047 O ILE A 158 ? O ILE A 1054 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ROC _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 21 _struct_site.details 'BINDING SITE FOR RESIDUE ROC A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 ASP A 25 ? ASP A 25 . ? 1_555 ? 2 AC1 21 GLY A 27 ? GLY A 27 . ? 1_555 ? 3 AC1 21 ALA A 28 ? ALA A 28 . ? 1_555 ? 4 AC1 21 ASP A 29 ? ASP A 29 . ? 1_555 ? 5 AC1 21 ASP A 30 ? ASP A 30 . ? 1_555 ? 6 AC1 21 ILE A 47 ? ILE A 47 . ? 1_555 ? 7 AC1 21 VAL A 48 ? VAL A 48 . ? 1_555 ? 8 AC1 21 GLY A 49 ? GLY A 49 . ? 1_555 ? 9 AC1 21 ILE A 50 ? ILE A 50 . ? 1_555 ? 10 AC1 21 PRO A 81 ? PRO A 81 . ? 1_555 ? 11 AC1 21 VAL A 82 ? VAL A 82 . ? 1_555 ? 12 AC1 21 ARG A 112 ? ARG A 1008 . ? 1_555 ? 13 AC1 21 ASP A 129 ? ASP A 1025 . ? 1_555 ? 14 AC1 21 GLY A 131 ? GLY A 1027 . ? 1_555 ? 15 AC1 21 ALA A 132 ? ALA A 1028 . ? 1_555 ? 16 AC1 21 ILE A 151 ? ILE A 1047 . ? 1_555 ? 17 AC1 21 VAL A 152 ? VAL A 1048 . ? 1_555 ? 18 AC1 21 GLY A 153 ? GLY A 1049 . ? 1_555 ? 19 AC1 21 ILE A 154 ? ILE A 1050 . ? 1_555 ? 20 AC1 21 HOH C . ? HOH A 1100 . ? 1_555 ? 21 AC1 21 HOH C . ? HOH A 1101 . ? 1_555 ? # _pdbx_molecule_features.prd_id PRD_000454 _pdbx_molecule_features.name Saquinavir _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000454 _pdbx_molecule.asym_id B # _pdbx_entry_details.entry_id 3N3I _pdbx_entry_details.nonpolymer_details ;THE INHIBITOR SAQUINAVIR (ROC) IS A HYDROXYETHYLAMINE CONTAINING TRANSITION STATE MIMETIC. IT IS REFERRED AS SQV IN THE ARTICLE. ; _pdbx_entry_details.sequence_details 'THE LINKER IS DISORDERED. SO THERE ARE NO COORDINATES FOR THE LINKER GGSSG.' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 100 ? A GLY 100 2 1 Y 1 A GLY 101 ? A GLY 101 3 1 Y 1 A SER 102 ? A SER 102 4 1 Y 1 A SER 103 ? A SER 103 5 1 Y 1 A GLY 104 ? A GLY 104 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 ROC C C N N 290 ROC O O N N 291 ROC N1 N Y N 292 ROC C2 C Y N 293 ROC C3 C Y N 294 ROC C4 C Y N 295 ROC C5 C Y N 296 ROC C6 C Y N 297 ROC C7 C Y N 298 ROC C8 C Y N 299 ROC C4A C Y N 300 ROC C8A C Y N 301 ROC N N N N 302 ROC CA C N S 303 ROC C1 C N N 304 ROC O1 O N N 305 ROC CB C N N 306 ROC CG C N N 307 ROC OD1 O N N 308 ROC ND2 N N N 309 ROC C9 C N R 310 ROC O2 O N N 311 ROC CA1 C N S 312 ROC N2 N N N 313 ROC CB1 C N N 314 ROC CG1 C Y N 315 ROC CD1 C Y N 316 ROC CD2 C Y N 317 ROC CE1 C Y N 318 ROC CE2 C Y N 319 ROC CZ C Y N 320 ROC N11 N N N 321 ROC CM C N N 322 ROC C21 C N S 323 ROC CC C N N 324 ROC O3 O N N 325 ROC C31 C N N 326 ROC C3A C N S 327 ROC C41 C N N 328 ROC C51 C N N 329 ROC C61 C N N 330 ROC C71 C N N 331 ROC C7A C N S 332 ROC C81 C N N 333 ROC N3 N N N 334 ROC CD C N N 335 ROC C11 C N N 336 ROC C22 C N N 337 ROC C32 C N N 338 ROC H3 H N N 339 ROC H4 H N N 340 ROC H5 H N N 341 ROC H6 H N N 342 ROC H7 H N N 343 ROC H8 H N N 344 ROC H H N N 345 ROC HA H N N 346 ROC HB2 H N N 347 ROC HB3 H N N 348 ROC HD21 H N N 349 ROC HD22 H N N 350 ROC HC H N N 351 ROC HO H N N 352 ROC HA1 H N N 353 ROC H1 H N N 354 ROC HB21 H N N 355 ROC HB31 H N N 356 ROC HD1 H N N 357 ROC HD2 H N N 358 ROC HE1 H N N 359 ROC HE2 H N N 360 ROC HZ H N N 361 ROC HM1 H N N 362 ROC HM2 H N N 363 ROC H2 H N N 364 ROC H31 H N N 365 ROC H32 H N N 366 ROC H3A H N N 367 ROC H41 H N N 368 ROC H42 H N N 369 ROC H51 H N N 370 ROC H52 H N N 371 ROC H61 H N N 372 ROC H62 H N N 373 ROC H71 H N N 374 ROC H72 H N N 375 ROC H7A H N N 376 ROC H81 H N N 377 ROC H82 H N N 378 ROC HN1 H N N 379 ROC H11 H N N 380 ROC H12 H N N 381 ROC H13 H N N 382 ROC H21 H N N 383 ROC H22 H N N 384 ROC H23 H N N 385 ROC H311 H N N 386 ROC H321 H N N 387 ROC H33 H N N 388 SER N N N N 389 SER CA C N S 390 SER C C N N 391 SER O O N N 392 SER CB C N N 393 SER OG O N N 394 SER OXT O N N 395 SER H H N N 396 SER H2 H N N 397 SER HA H N N 398 SER HB2 H N N 399 SER HB3 H N N 400 SER HG H N N 401 SER HXT H N N 402 THR N N N N 403 THR CA C N S 404 THR C C N N 405 THR O O N N 406 THR CB C N R 407 THR OG1 O N N 408 THR CG2 C N N 409 THR OXT O N N 410 THR H H N N 411 THR H2 H N N 412 THR HA H N N 413 THR HB H N N 414 THR HG1 H N N 415 THR HG21 H N N 416 THR HG22 H N N 417 THR HG23 H N N 418 THR HXT H N N 419 TRP N N N N 420 TRP CA C N S 421 TRP C C N N 422 TRP O O N N 423 TRP CB C N N 424 TRP CG C Y N 425 TRP CD1 C Y N 426 TRP CD2 C Y N 427 TRP NE1 N Y N 428 TRP CE2 C Y N 429 TRP CE3 C Y N 430 TRP CZ2 C Y N 431 TRP CZ3 C Y N 432 TRP CH2 C Y N 433 TRP OXT O N N 434 TRP H H N N 435 TRP H2 H N N 436 TRP HA H N N 437 TRP HB2 H N N 438 TRP HB3 H N N 439 TRP HD1 H N N 440 TRP HE1 H N N 441 TRP HE3 H N N 442 TRP HZ2 H N N 443 TRP HZ3 H N N 444 TRP HH2 H N N 445 TRP HXT H N N 446 TYR N N N N 447 TYR CA C N S 448 TYR C C N N 449 TYR O O N N 450 TYR CB C N N 451 TYR CG C Y N 452 TYR CD1 C Y N 453 TYR CD2 C Y N 454 TYR CE1 C Y N 455 TYR CE2 C Y N 456 TYR CZ C Y N 457 TYR OH O N N 458 TYR OXT O N N 459 TYR H H N N 460 TYR H2 H N N 461 TYR HA H N N 462 TYR HB2 H N N 463 TYR HB3 H N N 464 TYR HD1 H N N 465 TYR HD2 H N N 466 TYR HE1 H N N 467 TYR HE2 H N N 468 TYR HH H N N 469 TYR HXT H N N 470 VAL N N N N 471 VAL CA C N S 472 VAL C C N N 473 VAL O O N N 474 VAL CB C N N 475 VAL CG1 C N N 476 VAL CG2 C N N 477 VAL OXT O N N 478 VAL H H N N 479 VAL H2 H N N 480 VAL HA H N N 481 VAL HB H N N 482 VAL HG11 H N N 483 VAL HG12 H N N 484 VAL HG13 H N N 485 VAL HG21 H N N 486 VAL HG22 H N N 487 VAL HG23 H N N 488 VAL HXT H N N 489 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 ROC O C doub N N 277 ROC C C2 sing N N 278 ROC N1 C2 doub Y N 279 ROC N1 C8A sing Y N 280 ROC C2 C3 sing Y N 281 ROC C3 C4 doub Y N 282 ROC C3 H3 sing N N 283 ROC C4 C4A sing Y N 284 ROC C4 H4 sing N N 285 ROC C4A C5 doub Y N 286 ROC C4A C8A sing Y N 287 ROC C5 C6 sing Y N 288 ROC C5 H5 sing N N 289 ROC C6 C7 doub Y N 290 ROC C6 H6 sing N N 291 ROC C7 C8 sing Y N 292 ROC C7 H7 sing N N 293 ROC C8 C8A doub Y N 294 ROC C8 H8 sing N N 295 ROC N CA sing N N 296 ROC N H sing N N 297 ROC CA C1 sing N N 298 ROC CA CB sing N N 299 ROC CA HA sing N N 300 ROC C1 O1 doub N N 301 ROC CB CG sing N N 302 ROC CB HB2 sing N N 303 ROC CB HB3 sing N N 304 ROC CG OD1 doub N N 305 ROC CG ND2 sing N N 306 ROC ND2 HD21 sing N N 307 ROC ND2 HD22 sing N N 308 ROC C9 O2 sing N N 309 ROC C9 CA1 sing N N 310 ROC C9 HC sing N N 311 ROC O2 HO sing N N 312 ROC CA1 N2 sing N N 313 ROC CA1 CB1 sing N N 314 ROC CA1 HA1 sing N N 315 ROC N2 H1 sing N N 316 ROC CB1 CG1 sing N N 317 ROC CB1 HB21 sing N N 318 ROC CB1 HB31 sing N N 319 ROC CG1 CD1 doub Y N 320 ROC CG1 CD2 sing Y N 321 ROC CD1 CE1 sing Y N 322 ROC CD1 HD1 sing N N 323 ROC CD2 CE2 doub Y N 324 ROC CD2 HD2 sing N N 325 ROC CE1 CZ doub Y N 326 ROC CE1 HE1 sing N N 327 ROC CE2 CZ sing Y N 328 ROC CE2 HE2 sing N N 329 ROC CZ HZ sing N N 330 ROC N11 CM sing N N 331 ROC N11 C21 sing N N 332 ROC N11 C81 sing N N 333 ROC CM HM1 sing N N 334 ROC CM HM2 sing N N 335 ROC C21 CC sing N N 336 ROC C21 C31 sing N N 337 ROC C21 H2 sing N N 338 ROC CC O3 doub N N 339 ROC C31 C3A sing N N 340 ROC C31 H31 sing N N 341 ROC C31 H32 sing N N 342 ROC C3A C41 sing N N 343 ROC C3A C7A sing N N 344 ROC C3A H3A sing N N 345 ROC C41 C51 sing N N 346 ROC C41 H41 sing N N 347 ROC C41 H42 sing N N 348 ROC C51 C61 sing N N 349 ROC C51 H51 sing N N 350 ROC C51 H52 sing N N 351 ROC C61 C71 sing N N 352 ROC C61 H61 sing N N 353 ROC C61 H62 sing N N 354 ROC C71 C7A sing N N 355 ROC C71 H71 sing N N 356 ROC C71 H72 sing N N 357 ROC C7A C81 sing N N 358 ROC C7A H7A sing N N 359 ROC C81 H81 sing N N 360 ROC C81 H82 sing N N 361 ROC N3 CD sing N N 362 ROC N3 HN1 sing N N 363 ROC CD C11 sing N N 364 ROC CD C22 sing N N 365 ROC CD C32 sing N N 366 ROC C11 H11 sing N N 367 ROC C11 H12 sing N N 368 ROC C11 H13 sing N N 369 ROC C22 H21 sing N N 370 ROC C22 H22 sing N N 371 ROC C22 H23 sing N N 372 ROC C32 H311 sing N N 373 ROC C32 H321 sing N N 374 ROC C32 H33 sing N N 375 ROC C N sing N N 376 ROC C1 N2 sing N N 377 ROC C9 CM sing N N 378 ROC CC N3 sing N N 379 SER N CA sing N N 380 SER N H sing N N 381 SER N H2 sing N N 382 SER CA C sing N N 383 SER CA CB sing N N 384 SER CA HA sing N N 385 SER C O doub N N 386 SER C OXT sing N N 387 SER CB OG sing N N 388 SER CB HB2 sing N N 389 SER CB HB3 sing N N 390 SER OG HG sing N N 391 SER OXT HXT sing N N 392 THR N CA sing N N 393 THR N H sing N N 394 THR N H2 sing N N 395 THR CA C sing N N 396 THR CA CB sing N N 397 THR CA HA sing N N 398 THR C O doub N N 399 THR C OXT sing N N 400 THR CB OG1 sing N N 401 THR CB CG2 sing N N 402 THR CB HB sing N N 403 THR OG1 HG1 sing N N 404 THR CG2 HG21 sing N N 405 THR CG2 HG22 sing N N 406 THR CG2 HG23 sing N N 407 THR OXT HXT sing N N 408 TRP N CA sing N N 409 TRP N H sing N N 410 TRP N H2 sing N N 411 TRP CA C sing N N 412 TRP CA CB sing N N 413 TRP CA HA sing N N 414 TRP C O doub N N 415 TRP C OXT sing N N 416 TRP CB CG sing N N 417 TRP CB HB2 sing N N 418 TRP CB HB3 sing N N 419 TRP CG CD1 doub Y N 420 TRP CG CD2 sing Y N 421 TRP CD1 NE1 sing Y N 422 TRP CD1 HD1 sing N N 423 TRP CD2 CE2 doub Y N 424 TRP CD2 CE3 sing Y N 425 TRP NE1 CE2 sing Y N 426 TRP NE1 HE1 sing N N 427 TRP CE2 CZ2 sing Y N 428 TRP CE3 CZ3 doub Y N 429 TRP CE3 HE3 sing N N 430 TRP CZ2 CH2 doub Y N 431 TRP CZ2 HZ2 sing N N 432 TRP CZ3 CH2 sing Y N 433 TRP CZ3 HZ3 sing N N 434 TRP CH2 HH2 sing N N 435 TRP OXT HXT sing N N 436 TYR N CA sing N N 437 TYR N H sing N N 438 TYR N H2 sing N N 439 TYR CA C sing N N 440 TYR CA CB sing N N 441 TYR CA HA sing N N 442 TYR C O doub N N 443 TYR C OXT sing N N 444 TYR CB CG sing N N 445 TYR CB HB2 sing N N 446 TYR CB HB3 sing N N 447 TYR CG CD1 doub Y N 448 TYR CG CD2 sing Y N 449 TYR CD1 CE1 sing Y N 450 TYR CD1 HD1 sing N N 451 TYR CD2 CE2 doub Y N 452 TYR CD2 HD2 sing N N 453 TYR CE1 CZ doub Y N 454 TYR CE1 HE1 sing N N 455 TYR CE2 CZ sing Y N 456 TYR CE2 HE2 sing N N 457 TYR CZ OH sing N N 458 TYR OH HH sing N N 459 TYR OXT HXT sing N N 460 VAL N CA sing N N 461 VAL N H sing N N 462 VAL N H2 sing N N 463 VAL CA C sing N N 464 VAL CA CB sing N N 465 VAL CA HA sing N N 466 VAL C O doub N N 467 VAL C OXT sing N N 468 VAL CB CG1 sing N N 469 VAL CB CG2 sing N N 470 VAL CB HB sing N N 471 VAL CG1 HG11 sing N N 472 VAL CG1 HG12 sing N N 473 VAL CG1 HG13 sing N N 474 VAL CG2 HG21 sing N N 475 VAL CG2 HG22 sing N N 476 VAL CG2 HG23 sing N N 477 VAL OXT HXT sing N N 478 # _atom_sites.entry_id 3N3I _atom_sites.fract_transf_matrix[1][1] 0.016023 _atom_sites.fract_transf_matrix[1][2] 0.009251 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018502 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012011 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_