data_3N3I # _entry.id 3N3I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.283 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3N3I RCSB RCSB059333 WWPDB D_1000059333 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3N3I _pdbx_database_status.recvd_initial_deposition_date 2010-05-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Prashar, V.' 1 'Bihani, S.C.' 2 'Das, A.' 3 'Rao, D.R.' 4 'Hosur, M.V.' 5 # _citation.id primary _citation.title ;Insights into the mechanism of drug resistance: X-ray structure analysis of G48V/C95F tethered HIV-1 protease dimer/saquinavir complex ; _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_volume 396 _citation.page_first 1018 _citation.page_last 1023 _citation.year 2010 _citation.journal_id_ASTM BBRCA9 _citation.country US _citation.journal_id_ISSN 0006-291X _citation.journal_id_CSD 0146 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20471372 _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2010.05.049 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Prashar, V.' 1 primary 'Bihani, S.C.' 2 primary 'Das, A.' 3 primary 'Rao, D.R.' 4 primary 'Hosur, M.V.' 5 # _cell.entry_id 3N3I _cell.length_a 62.410 _cell.length_b 62.410 _cell.length_c 83.260 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3N3I _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Protease 22078.994 1 3.4.23.16 'G48V, G1048V, C95F, C1095F' 'UNP residues 489-587' ;Chimera protein with LINKER Gly-Gly-Ser-Ser-Gly (numbered A100 to A104) that covalently link sub-unit A with sub-unit B in the tethered dimer. ; 2 non-polymer syn ;(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1-phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide ; 670.841 1 ? ? ? ? 3 water nat water 18.015 60 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Retropepsin, PR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIVGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGFTLNFGGSSGPQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIVGIGGFIKV RQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGFTLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIVGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGFTLNFGGSSGPQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIVGIGGFIKV RQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGFTLNF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 VAL n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 GLN n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 LEU n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 VAL n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 LEU n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 CYS n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 PHE n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n 1 100 GLY n 1 101 GLY n 1 102 SER n 1 103 SER n 1 104 GLY n 1 105 PRO n 1 106 GLN n 1 107 VAL n 1 108 THR n 1 109 LEU n 1 110 TRP n 1 111 GLN n 1 112 ARG n 1 113 PRO n 1 114 LEU n 1 115 VAL n 1 116 THR n 1 117 ILE n 1 118 LYS n 1 119 ILE n 1 120 GLY n 1 121 GLY n 1 122 GLN n 1 123 LEU n 1 124 LYS n 1 125 GLU n 1 126 ALA n 1 127 LEU n 1 128 LEU n 1 129 ASP n 1 130 THR n 1 131 GLY n 1 132 ALA n 1 133 ASP n 1 134 ASP n 1 135 THR n 1 136 VAL n 1 137 LEU n 1 138 GLU n 1 139 GLU n 1 140 MET n 1 141 SER n 1 142 LEU n 1 143 PRO n 1 144 GLY n 1 145 ARG n 1 146 TRP n 1 147 LYS n 1 148 PRO n 1 149 LYS n 1 150 MET n 1 151 ILE n 1 152 VAL n 1 153 GLY n 1 154 ILE n 1 155 GLY n 1 156 GLY n 1 157 PHE n 1 158 ILE n 1 159 LYS n 1 160 VAL n 1 161 ARG n 1 162 GLN n 1 163 TYR n 1 164 ASP n 1 165 GLN n 1 166 ILE n 1 167 LEU n 1 168 ILE n 1 169 GLU n 1 170 ILE n 1 171 CYS n 1 172 GLY n 1 173 HIS n 1 174 LYS n 1 175 ALA n 1 176 ILE n 1 177 GLY n 1 178 THR n 1 179 VAL n 1 180 LEU n 1 181 VAL n 1 182 GLY n 1 183 PRO n 1 184 THR n 1 185 PRO n 1 186 VAL n 1 187 ASN n 1 188 ILE n 1 189 ILE n 1 190 GLY n 1 191 ARG n 1 192 ASN n 1 193 LEU n 1 194 LEU n 1 195 THR n 1 196 GLN n 1 197 ILE n 1 198 GLY n 1 199 PHE n 1 200 THR n 1 201 LEU n 1 202 ASN n 1 203 PHE n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 1 99 HIV-1 ? gag-pol ? 'group M subtype B (isolate HXB2)' ? ? ? ? 'Human immunodeficiency virus type 1' 11706 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET11A ? ? 1 2 sample ? 105 203 HIV-1 ? gag-pol ? 'group M subtype B (isolate HXB2)' ? ? ? ? 'Human immunodeficiency virus type 1' 11706 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET11A ? ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_HV1H2 _struct_ref.pdbx_db_accession P04585 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _struct_ref.pdbx_align_begin 489 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3N3I A 1 ? 99 ? P04585 489 ? 587 ? 1 99 2 1 3N3I A 105 ? 203 ? P04585 489 ? 587 ? 1001 1099 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3N3I VAL A 48 ? UNP P04585 GLY 536 'ENGINEERED MUTATION' 48 1 1 3N3I PHE A 95 ? UNP P04585 CYS 583 'ENGINEERED MUTATION' 95 2 1 3N3I GLY A 100 ? UNP P04585 ? ? LINKER 100 3 1 3N3I GLY A 101 ? UNP P04585 ? ? LINKER 101 4 1 3N3I SER A 102 ? UNP P04585 ? ? LINKER 102 5 1 3N3I SER A 103 ? UNP P04585 ? ? LINKER 103 6 1 3N3I GLY A 104 ? UNP P04585 ? ? LINKER 104 7 2 3N3I VAL A 152 ? UNP P04585 GLY 536 'ENGINEERED MUTATION' 1048 8 2 3N3I PHE A 199 ? UNP P04585 CYS 583 'ENGINEERED MUTATION' 1095 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 ROC peptide-like . ;(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1-phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide ; 'Fortovase; SAQUINAVIR,RO 31-8959' 'C38 H50 N6 O5' 670.841 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3N3I _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 41.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details '1-5% saturated Ammonium Sulfate, 200/100mM Phosphate/Citrate Buffer, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3N3I _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 32.981 _reflns.d_resolution_high 2.5 _reflns.number_obs 6307 _reflns.number_all 6307 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.2 _reflns.B_iso_Wilson_estimate 39.320 _reflns.pdbx_redundancy 5.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.64 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs 0.455 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.9 _reflns_shell.pdbx_redundancy 6.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 900 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3N3I _refine.ls_number_reflns_obs 6304 _refine.ls_number_reflns_all 6307 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.05 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.981 _refine.ls_d_res_high 2.501 _refine.ls_percent_reflns_obs 98.61 _refine.ls_R_factor_obs 0.2177 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2160 _refine.ls_R_factor_R_free 0.2531 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.57 _refine.ls_number_reflns_R_free 288 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 42.094 _refine.aniso_B[1][1] 2.7529 _refine.aniso_B[2][2] 2.7529 _refine.aniso_B[3][3] -5.5058 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.352 _refine.solvent_model_param_bsol 51.890 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.42 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_max 101.15 _refine.B_iso_min 14.94 _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error 27.840 _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1529 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 1638 _refine_hist.d_res_high 2.501 _refine_hist.d_res_low 32.981 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 1611 'X-RAY DIFFRACTION' ? f_angle_d 1.100 ? ? 2189 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.909 ? ? 606 'X-RAY DIFFRACTION' ? f_chiral_restr 0.066 ? ? 262 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 270 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.5007 3.1502 2974 0.2546 98.00 0.3477 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.1502 32.9838 3042 0.1983 99.00 0.2191 . . 144 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3N3I _struct.title 'Crystal Structure of G48V/C95F tethered HIV-1 Protease/Saquinavir complex' _struct.pdbx_descriptor 'Protease (E.C.3.4.23.16)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3N3I _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'HIV-1 protease, Saquinavir, Drug Resistance, tethered-dimer, fusion protein, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? GLY A 94 ? GLY A 86 GLY A 94 1 ? 9 HELX_P HELX_P2 2 GLY A 190 ? THR A 195 ? GLY A 1086 THR A 1091 1 ? 6 HELX_P HELX_P3 3 GLN A 196 ? GLY A 198 ? GLN A 1092 GLY A 1094 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 3 ? D ? 8 ? E ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? parallel D 4 5 ? anti-parallel D 5 6 ? parallel D 6 7 ? anti-parallel D 7 8 ? anti-parallel E 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 A 2 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 A 3 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 A 4 THR A 31 ? LEU A 33 ? THR A 31 LEU A 33 A 5 LYS A 70 ? VAL A 77 ? LYS A 70 VAL A 77 A 6 ARG A 57 ? ILE A 66 ? ARG A 57 ILE A 66 A 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 1 MET A 46 ? GLY A 49 ? MET A 46 GLY A 49 B 2 GLY A 52 ? LYS A 55 ? GLY A 52 LYS A 55 C 1 VAL A 107 ? THR A 108 ? VAL A 1003 THR A 1004 C 2 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 C 3 THR A 200 ? ASN A 202 ? THR A 1096 ASN A 1098 D 1 TRP A 146 ? LYS A 147 ? TRP A 1042 LYS A 1043 D 2 ARG A 161 ? ILE A 170 ? ARG A 1057 ILE A 1066 D 3 LYS A 174 ? GLY A 182 ? LYS A 1070 GLY A 1078 D 4 VAL A 136 ? GLU A 138 ? VAL A 1032 GLU A 1034 D 5 ILE A 188 ? ILE A 189 ? ILE A 1084 ILE A 1085 D 6 GLN A 122 ? LEU A 128 ? GLN A 1018 LEU A 1024 D 7 LEU A 114 ? ILE A 119 ? LEU A 1010 ILE A 1015 D 8 ARG A 161 ? ILE A 170 ? ARG A 1057 ILE A 1066 E 1 MET A 150 ? VAL A 152 ? MET A 1046 VAL A 1048 E 2 PHE A 157 ? LYS A 159 ? PHE A 1053 LYS A 1055 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 13 ? N ILE A 13 O LYS A 20 ? O LYS A 20 A 2 3 N LEU A 23 ? N LEU A 23 O ILE A 85 ? O ILE A 85 A 3 4 O ILE A 84 ? O ILE A 84 N VAL A 32 ? N VAL A 32 A 4 5 N LEU A 33 ? N LEU A 33 O LEU A 76 ? O LEU A 76 A 5 6 O ALA A 71 ? O ALA A 71 N ILE A 64 ? N ILE A 64 A 6 7 O GLU A 65 ? O GLU A 65 N LYS A 14 ? N LYS A 14 B 1 2 N ILE A 47 ? N ILE A 47 O ILE A 54 ? O ILE A 54 C 1 2 O VAL A 107 ? O VAL A 1003 N LEU A 97 ? N LEU A 97 C 2 3 N ASN A 98 ? N ASN A 98 O THR A 200 ? O THR A 1096 D 1 2 N LYS A 147 ? N LYS A 1043 O GLN A 162 ? O GLN A 1058 D 2 3 N ILE A 168 ? N ILE A 1064 O ALA A 175 ? O ALA A 1071 D 3 4 O LEU A 180 ? O LEU A 1076 N LEU A 137 ? N LEU A 1033 D 4 5 N VAL A 136 ? N VAL A 1032 O ILE A 188 ? O ILE A 1084 D 5 6 O ILE A 189 ? O ILE A 1085 N LEU A 127 ? N LEU A 1023 D 6 7 O ALA A 126 ? O ALA A 1022 N VAL A 115 ? N VAL A 1011 D 7 8 N LYS A 118 ? N LYS A 1014 O GLU A 169 ? O GLU A 1065 E 1 2 N ILE A 151 ? N ILE A 1047 O ILE A 158 ? O ILE A 1054 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 21 _struct_site.details 'BINDING SITE FOR RESIDUE ROC A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 ASP A 25 ? ASP A 25 . ? 1_555 ? 2 AC1 21 GLY A 27 ? GLY A 27 . ? 1_555 ? 3 AC1 21 ALA A 28 ? ALA A 28 . ? 1_555 ? 4 AC1 21 ASP A 29 ? ASP A 29 . ? 1_555 ? 5 AC1 21 ASP A 30 ? ASP A 30 . ? 1_555 ? 6 AC1 21 ILE A 47 ? ILE A 47 . ? 1_555 ? 7 AC1 21 VAL A 48 ? VAL A 48 . ? 1_555 ? 8 AC1 21 GLY A 49 ? GLY A 49 . ? 1_555 ? 9 AC1 21 ILE A 50 ? ILE A 50 . ? 1_555 ? 10 AC1 21 PRO A 81 ? PRO A 81 . ? 1_555 ? 11 AC1 21 VAL A 82 ? VAL A 82 . ? 1_555 ? 12 AC1 21 ARG A 112 ? ARG A 1008 . ? 1_555 ? 13 AC1 21 ASP A 129 ? ASP A 1025 . ? 1_555 ? 14 AC1 21 GLY A 131 ? GLY A 1027 . ? 1_555 ? 15 AC1 21 ALA A 132 ? ALA A 1028 . ? 1_555 ? 16 AC1 21 ILE A 151 ? ILE A 1047 . ? 1_555 ? 17 AC1 21 VAL A 152 ? VAL A 1048 . ? 1_555 ? 18 AC1 21 GLY A 153 ? GLY A 1049 . ? 1_555 ? 19 AC1 21 ILE A 154 ? ILE A 1050 . ? 1_555 ? 20 AC1 21 HOH C . ? HOH A 1100 . ? 1_555 ? 21 AC1 21 HOH C . ? HOH A 1101 . ? 1_555 ? # _database_PDB_matrix.entry_id 3N3I _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3N3I _atom_sites.fract_transf_matrix[1][1] 0.016023 _atom_sites.fract_transf_matrix[1][2] 0.009251 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018502 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012011 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 GLY 100 100 ? ? ? A . n A 1 101 GLY 101 101 ? ? ? A . n A 1 102 SER 102 102 ? ? ? A . n A 1 103 SER 103 103 ? ? ? A . n A 1 104 GLY 104 104 ? ? ? A . n A 1 105 PRO 105 1001 1001 PRO PRO A . n A 1 106 GLN 106 1002 1002 GLN GLN A . n A 1 107 VAL 107 1003 1003 VAL VAL A . n A 1 108 THR 108 1004 1004 THR THR A . n A 1 109 LEU 109 1005 1005 LEU LEU A . n A 1 110 TRP 110 1006 1006 TRP TRP A . n A 1 111 GLN 111 1007 1007 GLN GLN A . n A 1 112 ARG 112 1008 1008 ARG ARG A . n A 1 113 PRO 113 1009 1009 PRO PRO A . n A 1 114 LEU 114 1010 1010 LEU LEU A . n A 1 115 VAL 115 1011 1011 VAL VAL A . n A 1 116 THR 116 1012 1012 THR THR A . n A 1 117 ILE 117 1013 1013 ILE ILE A . n A 1 118 LYS 118 1014 1014 LYS LYS A . n A 1 119 ILE 119 1015 1015 ILE ILE A . n A 1 120 GLY 120 1016 1016 GLY GLY A . n A 1 121 GLY 121 1017 1017 GLY GLY A . n A 1 122 GLN 122 1018 1018 GLN GLN A . n A 1 123 LEU 123 1019 1019 LEU LEU A . n A 1 124 LYS 124 1020 1020 LYS LYS A . n A 1 125 GLU 125 1021 1021 GLU GLU A . n A 1 126 ALA 126 1022 1022 ALA ALA A . n A 1 127 LEU 127 1023 1023 LEU LEU A . n A 1 128 LEU 128 1024 1024 LEU LEU A . n A 1 129 ASP 129 1025 1025 ASP ASP A . n A 1 130 THR 130 1026 1026 THR THR A . n A 1 131 GLY 131 1027 1027 GLY GLY A . n A 1 132 ALA 132 1028 1028 ALA ALA A . n A 1 133 ASP 133 1029 1029 ASP ASP A . n A 1 134 ASP 134 1030 1030 ASP ASP A . n A 1 135 THR 135 1031 1031 THR THR A . n A 1 136 VAL 136 1032 1032 VAL VAL A . n A 1 137 LEU 137 1033 1033 LEU LEU A . n A 1 138 GLU 138 1034 1034 GLU GLU A . n A 1 139 GLU 139 1035 1035 GLU GLU A . n A 1 140 MET 140 1036 1036 MET MET A . n A 1 141 SER 141 1037 1037 SER SER A . n A 1 142 LEU 142 1038 1038 LEU LEU A . n A 1 143 PRO 143 1039 1039 PRO PRO A . n A 1 144 GLY 144 1040 1040 GLY GLY A . n A 1 145 ARG 145 1041 1041 ARG ARG A . n A 1 146 TRP 146 1042 1042 TRP TRP A . n A 1 147 LYS 147 1043 1043 LYS LYS A . n A 1 148 PRO 148 1044 1044 PRO PRO A . n A 1 149 LYS 149 1045 1045 LYS LYS A . n A 1 150 MET 150 1046 1046 MET MET A . n A 1 151 ILE 151 1047 1047 ILE ILE A . n A 1 152 VAL 152 1048 1048 VAL VAL A . n A 1 153 GLY 153 1049 1049 GLY GLY A . n A 1 154 ILE 154 1050 1050 ILE ILE A . n A 1 155 GLY 155 1051 1051 GLY GLY A . n A 1 156 GLY 156 1052 1052 GLY GLY A . n A 1 157 PHE 157 1053 1053 PHE PHE A . n A 1 158 ILE 158 1054 1054 ILE ILE A . n A 1 159 LYS 159 1055 1055 LYS LYS A . n A 1 160 VAL 160 1056 1056 VAL VAL A . n A 1 161 ARG 161 1057 1057 ARG ARG A . n A 1 162 GLN 162 1058 1058 GLN GLN A . n A 1 163 TYR 163 1059 1059 TYR TYR A . n A 1 164 ASP 164 1060 1060 ASP ASP A . n A 1 165 GLN 165 1061 1061 GLN GLN A . n A 1 166 ILE 166 1062 1062 ILE ILE A . n A 1 167 LEU 167 1063 1063 LEU LEU A . n A 1 168 ILE 168 1064 1064 ILE ILE A . n A 1 169 GLU 169 1065 1065 GLU GLU A . n A 1 170 ILE 170 1066 1066 ILE ILE A . n A 1 171 CYS 171 1067 1067 CYS CYS A . n A 1 172 GLY 172 1068 1068 GLY GLY A . n A 1 173 HIS 173 1069 1069 HIS HIS A . n A 1 174 LYS 174 1070 1070 LYS LYS A . n A 1 175 ALA 175 1071 1071 ALA ALA A . n A 1 176 ILE 176 1072 1072 ILE ILE A . n A 1 177 GLY 177 1073 1073 GLY GLY A . n A 1 178 THR 178 1074 1074 THR THR A . n A 1 179 VAL 179 1075 1075 VAL VAL A . n A 1 180 LEU 180 1076 1076 LEU LEU A . n A 1 181 VAL 181 1077 1077 VAL VAL A . n A 1 182 GLY 182 1078 1078 GLY GLY A . n A 1 183 PRO 183 1079 1079 PRO PRO A . n A 1 184 THR 184 1080 1080 THR THR A . n A 1 185 PRO 185 1081 1081 PRO PRO A . n A 1 186 VAL 186 1082 1082 VAL VAL A . n A 1 187 ASN 187 1083 1083 ASN ASN A . n A 1 188 ILE 188 1084 1084 ILE ILE A . n A 1 189 ILE 189 1085 1085 ILE ILE A . n A 1 190 GLY 190 1086 1086 GLY GLY A . n A 1 191 ARG 191 1087 1087 ARG ARG A . n A 1 192 ASN 192 1088 1088 ASN ASN A . n A 1 193 LEU 193 1089 1089 LEU LEU A . n A 1 194 LEU 194 1090 1090 LEU LEU A . n A 1 195 THR 195 1091 1091 THR THR A . n A 1 196 GLN 196 1092 1092 GLN GLN A . n A 1 197 ILE 197 1093 1093 ILE ILE A . n A 1 198 GLY 198 1094 1094 GLY GLY A . n A 1 199 PHE 199 1095 1095 PHE PHE A . n A 1 200 THR 200 1096 1096 THR THR A . n A 1 201 LEU 201 1097 1097 LEU LEU A . n A 1 202 ASN 202 1098 1098 ASN ASN A . n A 1 203 PHE 203 1099 1099 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ROC 1 201 201 ROC ROC A . C 3 HOH 1 1100 1 HOH WAT A . C 3 HOH 2 1101 2 HOH WAT A . C 3 HOH 3 1102 3 HOH WAT A . C 3 HOH 4 1103 4 HOH WAT A . C 3 HOH 5 1104 5 HOH WAT A . C 3 HOH 6 1105 6 HOH WAT A . C 3 HOH 7 1106 7 HOH WAT A . C 3 HOH 8 1107 8 HOH WAT A . C 3 HOH 9 1108 9 HOH WAT A . C 3 HOH 10 1109 10 HOH WAT A . C 3 HOH 11 1110 11 HOH WAT A . C 3 HOH 12 1111 12 HOH WAT A . C 3 HOH 13 1112 13 HOH WAT A . C 3 HOH 14 1113 14 HOH WAT A . C 3 HOH 15 1114 15 HOH WAT A . C 3 HOH 16 1115 16 HOH WAT A . C 3 HOH 17 1116 17 HOH WAT A . C 3 HOH 18 1117 18 HOH WAT A . C 3 HOH 19 1118 19 HOH WAT A . C 3 HOH 20 1119 20 HOH WAT A . C 3 HOH 21 1120 21 HOH WAT A . C 3 HOH 22 1121 22 HOH WAT A . C 3 HOH 23 1122 23 HOH WAT A . C 3 HOH 24 1123 24 HOH WAT A . C 3 HOH 25 1124 25 HOH WAT A . C 3 HOH 26 1125 26 HOH WAT A . C 3 HOH 27 1126 27 HOH WAT A . C 3 HOH 28 1127 28 HOH WAT A . C 3 HOH 29 1128 29 HOH WAT A . C 3 HOH 30 1129 30 HOH WAT A . C 3 HOH 31 1130 31 HOH WAT A . C 3 HOH 32 1131 32 HOH WAT A . C 3 HOH 33 1132 33 HOH WAT A . C 3 HOH 34 1133 34 HOH WAT A . C 3 HOH 35 1134 35 HOH WAT A . C 3 HOH 36 1135 36 HOH WAT A . C 3 HOH 37 1136 37 HOH WAT A . C 3 HOH 38 1137 1 HOH WAT A . C 3 HOH 39 1138 2 HOH WAT A . C 3 HOH 40 1139 3 HOH WAT A . C 3 HOH 41 1140 6 HOH WAT A . C 3 HOH 42 1141 7 HOH WAT A . C 3 HOH 43 1142 9 HOH WAT A . C 3 HOH 44 1143 10 HOH WAT A . C 3 HOH 45 1144 11 HOH WAT A . C 3 HOH 46 1145 12 HOH WAT A . C 3 HOH 47 1146 19 HOH WAT A . C 3 HOH 48 1147 20 HOH WAT A . C 3 HOH 49 1148 21 HOH WAT A . C 3 HOH 50 1149 22 HOH WAT A . C 3 HOH 51 1150 24 HOH WAT A . C 3 HOH 52 1151 25 HOH WAT A . C 3 HOH 53 1152 26 HOH WAT A . C 3 HOH 54 1153 27 HOH WAT A . C 3 HOH 55 1154 28 HOH WAT A . C 3 HOH 56 1155 30 HOH WAT A . C 3 HOH 57 1156 40 HOH WAT A . C 3 HOH 58 1157 42 HOH WAT A . C 3 HOH 59 1158 47 HOH WAT A . C 3 HOH 60 1159 48 HOH WAT A . # _pdbx_molecule_features.prd_id PRD_000454 _pdbx_molecule_features.name Saquinavir _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000454 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-12-12 4 'Structure model' 1 3 2017-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' Other 8 4 'Structure model' 'Source and taxonomy' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category entity_src_gen # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(phenix.refine: 1.6_289)' ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 3N3I _pdbx_entry_details.nonpolymer_details ;THE INHIBITOR SAQUINAVIR (ROC) IS A HYDROXYETHYLAMINE CONTAINING TRANSITION STATE MIMETIC. IT IS REFERRED AS SQV IN THE ARTICLE. ; _pdbx_entry_details.sequence_details 'THE LINKER IS DISORDERED. SO THERE ARE NO COORDINATES FOR THE LINKER GGSSG.' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 100 ? A GLY 100 2 1 Y 1 A GLY 101 ? A GLY 101 3 1 Y 1 A SER 102 ? A SER 102 4 1 Y 1 A SER 103 ? A SER 103 5 1 Y 1 A GLY 104 ? A GLY 104 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1-phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide ; ROC 3 water HOH #