HEADER TRANSFERASE 20-MAY-10 3N3V OBSLTE 20-FEB-13 3N3V 4ITR TITLE CRYSTAL STRUCTURE OF IBPAFIC2-H3717A IN COMPLEX WITH ADENYLYLATED TITLE 2 CDC42 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE IBPA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FIDO 2 DOMAIN RESIDUES 3488-3786; COMPND 5 SYNONYM: AMPYLATOR IBPA; COMPND 6 EC: 2.7.7.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CELL DIVISION CONTROL PROTEIN 42 HOMOLOG; COMPND 11 CHAIN: C, D; COMPND 12 SYNONYM: G25K GTP-BINDING PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HISTOPHILUS SOMNI; SOURCE 3 ORGANISM_TAXID: 228400; SOURCE 4 STRAIN: 2336; SOURCE 5 GENE: HSM_1489, IBPA, P76; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CDC42; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-4T1 KEYWDS FIC DOMAIN IN COMPLEX WITH ADENYLYLATED CDC42, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.XIAO REVDAT 3 20-FEB-13 3N3V 1 OBSLTE VERSN REVDAT 2 18-AUG-10 3N3V 1 JRNL REVDAT 1 14-JUL-10 3N3V 0 JRNL AUTH J.XIAO,C.A.WORBY,S.MATTOO,B.SANKARAN,J.E.DIXON JRNL TITL STRUCTURAL BASIS OF FIC-MEDIATED ADENYLYLATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 1004 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20622875 JRNL DOI 10.1038/NSMB.1867 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 49831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9630 - 6.0240 1.00 2820 164 0.1790 0.1850 REMARK 3 2 6.0240 - 4.7830 1.00 2701 146 0.1680 0.2100 REMARK 3 3 4.7830 - 4.1790 1.00 2699 130 0.1390 0.1630 REMARK 3 4 4.1790 - 3.7970 1.00 2660 138 0.1440 0.1660 REMARK 3 5 3.7970 - 3.5250 1.00 2648 135 0.1620 0.2080 REMARK 3 6 3.5250 - 3.3170 1.00 2661 142 0.1740 0.2120 REMARK 3 7 3.3170 - 3.1510 1.00 2622 126 0.1770 0.2790 REMARK 3 8 3.1510 - 3.0140 1.00 2619 146 0.1970 0.2420 REMARK 3 9 3.0140 - 2.8980 1.00 2625 141 0.1970 0.2630 REMARK 3 10 2.8980 - 2.7980 1.00 2616 149 0.2000 0.3110 REMARK 3 11 2.7980 - 2.7110 1.00 2613 135 0.1940 0.2520 REMARK 3 12 2.7110 - 2.6330 1.00 2601 143 0.1820 0.2460 REMARK 3 13 2.6330 - 2.5640 1.00 2620 131 0.1880 0.2420 REMARK 3 14 2.5640 - 2.5010 1.00 2624 151 0.1980 0.2910 REMARK 3 15 2.5010 - 2.4440 1.00 2573 123 0.1940 0.2620 REMARK 3 16 2.4440 - 2.3920 1.00 2597 144 0.1910 0.2670 REMARK 3 17 2.3920 - 2.3450 0.99 2564 143 0.2040 0.2790 REMARK 3 18 2.3450 - 2.3000 0.94 2444 137 0.2130 0.2690 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 26.80 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.87900 REMARK 3 B22 (A**2) : 0.35300 REMARK 3 B33 (A**2) : 0.52600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7684 REMARK 3 ANGLE : 0.793 10428 REMARK 3 CHIRALITY : 0.058 1214 REMARK 3 PLANARITY : 0.003 1329 REMARK 3 DIHEDRAL : 17.679 2942 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3N3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB059346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49917 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, BIS-TRIS, (NH4)2SO4, PH 5.5, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.74750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.48450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.49850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.48450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.74750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.49850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 3784 REMARK 465 GLU B 3785 REMARK 465 ASP B 3786 REMARK 465 MET C 1 REMARK 465 GLN C 2 REMARK 465 PRO C 179 REMARK 465 PRO C 180 REMARK 465 GLU C 181 REMARK 465 THR C 182 REMARK 465 GLN C 183 REMARK 465 PRO C 184 REMARK 465 LYS C 185 REMARK 465 ARG C 186 REMARK 465 LYS C 187 REMARK 465 CYS C 188 REMARK 465 MET D 1 REMARK 465 GLN D 2 REMARK 465 PRO D 180 REMARK 465 GLU D 181 REMARK 465 THR D 182 REMARK 465 GLN D 183 REMARK 465 PRO D 184 REMARK 465 LYS D 185 REMARK 465 ARG D 186 REMARK 465 LYS D 187 REMARK 465 CYS D 188 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR C 32 OH REMARK 470 TYR D 32 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR C 32 CE2 TYR C 32 CD2 0.136 REMARK 500 TYR D 32 CE2 TYR D 32 CD2 0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A3701 114.39 -38.69 REMARK 500 THR A3744 -94.92 -107.33 REMARK 500 SER A3783 -178.32 -62.81 REMARK 500 ASP B3655 32.18 -85.97 REMARK 500 GLU B3671 75.59 33.23 REMARK 500 THR B3744 -92.48 -109.13 REMARK 500 GLU C 31 -141.59 -101.14 REMARK 500 LYS C 96 -54.61 -126.88 REMARK 500 CYS C 105 65.90 -162.56 REMARK 500 GLU D 31 -134.35 -107.32 REMARK 500 LYS D 96 -56.59 -125.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 189 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP C 200 O2B REMARK 620 2 THR C 35 O 164.1 REMARK 620 3 THR C 17 OG1 86.5 88.2 REMARK 620 4 HOH C 238 O 97.7 83.9 165.0 REMARK 620 5 HOH C 192 O 96.2 98.4 86.1 107.6 REMARK 620 6 HOH C 191 O 84.5 79.7 78.9 87.2 164.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 189 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR D 35 O REMARK 620 2 GDP D 200 O2B 161.0 REMARK 620 3 THR D 17 OG1 84.9 78.5 REMARK 620 4 HOH D 692 O 92.7 102.7 173.4 REMARK 620 5 HOH D 267 O 94.6 88.9 71.4 115.0 REMARK 620 6 HOH D 191 O 83.7 83.4 76.0 97.6 147.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 189 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP D 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 189 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 190 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N3U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF IBPAFIC2 DBREF 3N3V A 3488 3786 UNP Q06277 IBPA_HAES2 3488 3786 DBREF 3N3V B 3488 3786 UNP Q06277 IBPA_HAES2 3488 3786 DBREF 3N3V C 1 188 UNP P60953 CDC42_HUMAN 1 188 DBREF 3N3V D 1 188 UNP P60953 CDC42_HUMAN 1 188 SEQADV 3N3V ALA A 3717 UNP Q06277 HIS 3717 ENGINEERED MUTATION SEQADV 3N3V ALA B 3717 UNP Q06277 HIS 3717 ENGINEERED MUTATION SEQADV 3N3V LYS C 163 UNP P60953 ARG 163 VARIANT SEQADV 3N3V LYS D 163 UNP P60953 ARG 163 VARIANT SEQRES 1 A 299 VAL ASN TYR GLN ASP LEU GLU ASP ASN LEU ASN LEU LYS SEQRES 2 A 299 GLY LEU ILE SER LEU GLU ASP ASP ARG ASN ALA ASN PHE SEQRES 3 A 299 GLU SER ASN VAL LEU LYS ASN GLU LYS PHE LEU ASP GLU SEQRES 4 A 299 ALA ARG GLU ILE SER LYS LYS SER ILE PRO GLU ALA THR SEQRES 5 A 299 VAL LYS GLN MET SER HIS LEU PRO GLU PHE ASP ASP ILE SEQRES 6 A 299 LEU THR GLU GLY ALA LYS LYS VAL GLU SER ARG ILE ASN SEQRES 7 A 299 LYS ALA ILE THR PHE ARG PRO SER VAL GLU GLU PHE SER SEQRES 8 A 299 GLU ILE GLN ASP LEU VAL LYS THR LEU PRO LYS THR LYS SEQRES 9 A 299 VAL ILE GLU ASP LEU SER THR LYS THR ASN GLU ILE THR SEQRES 10 A 299 GLU ALA LEU ALA ALA THR SER LYS THR ILE GLN ARG THR SEQRES 11 A 299 PRO GLU LEU LYS GLU GLN LEU LYS THR ALA ILE GLU ASP SEQRES 12 A 299 PHE LEU GLN ASN SER GLN GLY LYS PRO LEU THR VAL GLN SEQRES 13 A 299 MET ILE GLU ASN LEU ASN HIS GLY LEU ARG PRO ASP GLU SEQRES 14 A 299 GLY GLU GLY ARG LEU LEU TYR LYS LYS GLU ASN LEU THR SEQRES 15 A 299 LYS GLU ASN ALA VAL PHE SER SER PRO GLU ALA ALA LYS SEQRES 16 A 299 ILE GLN LEU ALA GLU THR VAL ASP PHE ILE ASN ARG ALA SEQRES 17 A 299 LYS ASN GLU GLY ILE GLU PRO SER VAL VAL GLY ALA LEU SEQRES 18 A 299 VAL TYR GLN ARG LEU ILE ALA TYR ALA PRO PHE ALA GLU SEQRES 19 A 299 GLY ASN GLY ARG MET ALA ARG VAL ILE VAL ASN LYS ILE SEQRES 20 A 299 LEU LEU ASP ALA GLY TYR PRO ALA PHE THR LYS PHE SER SEQRES 21 A 299 ASP GLU PHE GLU PRO GLN ILE ILE PRO GLN THR LYS ALA SEQRES 22 A 299 SER THR LYS SER ALA THR SER SER GLU VAL VAL VAL GLU SEQRES 23 A 299 PHE LEU LYS GLU LEU ALA LYS LYS GLY SER LYS GLU ASP SEQRES 1 B 299 VAL ASN TYR GLN ASP LEU GLU ASP ASN LEU ASN LEU LYS SEQRES 2 B 299 GLY LEU ILE SER LEU GLU ASP ASP ARG ASN ALA ASN PHE SEQRES 3 B 299 GLU SER ASN VAL LEU LYS ASN GLU LYS PHE LEU ASP GLU SEQRES 4 B 299 ALA ARG GLU ILE SER LYS LYS SER ILE PRO GLU ALA THR SEQRES 5 B 299 VAL LYS GLN MET SER HIS LEU PRO GLU PHE ASP ASP ILE SEQRES 6 B 299 LEU THR GLU GLY ALA LYS LYS VAL GLU SER ARG ILE ASN SEQRES 7 B 299 LYS ALA ILE THR PHE ARG PRO SER VAL GLU GLU PHE SER SEQRES 8 B 299 GLU ILE GLN ASP LEU VAL LYS THR LEU PRO LYS THR LYS SEQRES 9 B 299 VAL ILE GLU ASP LEU SER THR LYS THR ASN GLU ILE THR SEQRES 10 B 299 GLU ALA LEU ALA ALA THR SER LYS THR ILE GLN ARG THR SEQRES 11 B 299 PRO GLU LEU LYS GLU GLN LEU LYS THR ALA ILE GLU ASP SEQRES 12 B 299 PHE LEU GLN ASN SER GLN GLY LYS PRO LEU THR VAL GLN SEQRES 13 B 299 MET ILE GLU ASN LEU ASN HIS GLY LEU ARG PRO ASP GLU SEQRES 14 B 299 GLY GLU GLY ARG LEU LEU TYR LYS LYS GLU ASN LEU THR SEQRES 15 B 299 LYS GLU ASN ALA VAL PHE SER SER PRO GLU ALA ALA LYS SEQRES 16 B 299 ILE GLN LEU ALA GLU THR VAL ASP PHE ILE ASN ARG ALA SEQRES 17 B 299 LYS ASN GLU GLY ILE GLU PRO SER VAL VAL GLY ALA LEU SEQRES 18 B 299 VAL TYR GLN ARG LEU ILE ALA TYR ALA PRO PHE ALA GLU SEQRES 19 B 299 GLY ASN GLY ARG MET ALA ARG VAL ILE VAL ASN LYS ILE SEQRES 20 B 299 LEU LEU ASP ALA GLY TYR PRO ALA PHE THR LYS PHE SER SEQRES 21 B 299 ASP GLU PHE GLU PRO GLN ILE ILE PRO GLN THR LYS ALA SEQRES 22 B 299 SER THR LYS SER ALA THR SER SER GLU VAL VAL VAL GLU SEQRES 23 B 299 PHE LEU LYS GLU LEU ALA LYS LYS GLY SER LYS GLU ASP SEQRES 1 C 188 MET GLN THR ILE LYS CYS VAL VAL VAL GLY ASP GLY ALA SEQRES 2 C 188 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 C 188 LYS PHE PRO SER GLU TYR VAL PRO THR VAL PHE ASP ASN SEQRES 4 C 188 TYR ALA VAL THR VAL MET ILE GLY GLY GLU PRO TYR THR SEQRES 5 C 188 LEU GLY LEU PHE ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 C 188 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 C 188 LEU VAL CYS PHE SER VAL VAL SER PRO SER SER PHE GLU SEQRES 8 C 188 ASN VAL LYS GLU LYS TRP VAL PRO GLU ILE THR HIS HIS SEQRES 9 C 188 CYS PRO LYS THR PRO PHE LEU LEU VAL GLY THR GLN ILE SEQRES 10 C 188 ASP LEU ARG ASP ASP PRO SER THR ILE GLU LYS LEU ALA SEQRES 11 C 188 LYS ASN LYS GLN LYS PRO ILE THR PRO GLU THR ALA GLU SEQRES 12 C 188 LYS LEU ALA ARG ASP LEU LYS ALA VAL LYS TYR VAL GLU SEQRES 13 C 188 CYS SER ALA LEU THR GLN LYS GLY LEU LYS ASN VAL PHE SEQRES 14 C 188 ASP GLU ALA ILE LEU ALA ALA LEU GLU PRO PRO GLU THR SEQRES 15 C 188 GLN PRO LYS ARG LYS CYS SEQRES 1 D 188 MET GLN THR ILE LYS CYS VAL VAL VAL GLY ASP GLY ALA SEQRES 2 D 188 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 D 188 LYS PHE PRO SER GLU TYR VAL PRO THR VAL PHE ASP ASN SEQRES 4 D 188 TYR ALA VAL THR VAL MET ILE GLY GLY GLU PRO TYR THR SEQRES 5 D 188 LEU GLY LEU PHE ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 D 188 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 D 188 LEU VAL CYS PHE SER VAL VAL SER PRO SER SER PHE GLU SEQRES 8 D 188 ASN VAL LYS GLU LYS TRP VAL PRO GLU ILE THR HIS HIS SEQRES 9 D 188 CYS PRO LYS THR PRO PHE LEU LEU VAL GLY THR GLN ILE SEQRES 10 D 188 ASP LEU ARG ASP ASP PRO SER THR ILE GLU LYS LEU ALA SEQRES 11 D 188 LYS ASN LYS GLN LYS PRO ILE THR PRO GLU THR ALA GLU SEQRES 12 D 188 LYS LEU ALA ARG ASP LEU LYS ALA VAL LYS TYR VAL GLU SEQRES 13 D 188 CYS SER ALA LEU THR GLN LYS GLY LEU LYS ASN VAL PHE SEQRES 14 D 188 ASP GLU ALA ILE LEU ALA ALA LEU GLU PRO PRO GLU THR SEQRES 15 D 188 GLN PRO LYS ARG LYS CYS HET SO4 B 1 5 HET SO4 B 2 5 HET AMP C 201 23 HET GDP C 200 28 HET MG C 189 1 HET SO4 C 190 5 HET AMP D 201 23 HET GDP D 200 28 HET MG D 189 1 HET SO4 D 190 5 HETNAM SO4 SULFATE ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 AMP 2(C10 H14 N5 O7 P) FORMUL 8 GDP 2(C10 H15 N5 O11 P2) FORMUL 9 MG 2(MG 2+) FORMUL 15 HOH *792(H2 O) HELIX 1 1 ASN A 3498 ASN A 3512 1 15 HELIX 2 2 ASN A 3512 VAL A 3517 1 6 HELIX 3 3 ASN A 3520 LYS A 3533 1 14 HELIX 4 4 PRO A 3536 SER A 3544 1 9 HELIX 5 5 GLU A 3548 THR A 3569 1 22 HELIX 6 6 SER A 3573 LYS A 3585 1 13 HELIX 7 7 ASP A 3595 THR A 3610 1 16 HELIX 8 8 SER A 3611 THR A 3617 1 7 HELIX 9 9 THR A 3617 GLN A 3636 1 20 HELIX 10 10 THR A 3641 LEU A 3652 1 12 HELIX 11 11 SER A 3677 GLU A 3698 1 22 HELIX 12 12 GLU A 3701 ALA A 3717 1 17 HELIX 13 13 GLY A 3722 ALA A 3738 1 17 HELIX 14 14 PHE A 3750 ILE A 3754 5 5 HELIX 15 15 THR A 3766 LYS A 3780 1 15 HELIX 16 16 ASN B 3498 VAL B 3517 1 20 HELIX 17 17 ASN B 3520 LYS B 3533 1 14 HELIX 18 18 PRO B 3536 SER B 3544 1 9 HELIX 19 19 GLU B 3548 THR B 3569 1 22 HELIX 20 20 SER B 3573 LEU B 3587 1 15 HELIX 21 21 ASP B 3595 THR B 3610 1 16 HELIX 22 22 SER B 3611 THR B 3617 1 7 HELIX 23 23 THR B 3617 GLN B 3636 1 20 HELIX 24 24 THR B 3641 LEU B 3652 1 12 HELIX 25 25 ARG B 3653 GLY B 3657 5 5 HELIX 26 26 SER B 3677 GLU B 3698 1 22 HELIX 27 27 GLU B 3701 ALA B 3717 1 17 HELIX 28 28 GLY B 3722 ALA B 3738 1 17 HELIX 29 29 PHE B 3750 ILE B 3754 5 5 HELIX 30 30 THR B 3766 LYS B 3780 1 15 HELIX 31 31 GLY C 15 ASN C 26 1 12 HELIX 32 32 GLN C 61 ASP C 65 5 5 HELIX 33 33 LEU C 67 TYR C 72 5 6 HELIX 34 34 SER C 86 LYS C 96 1 11 HELIX 35 35 LYS C 96 CYS C 105 1 10 HELIX 36 36 GLN C 116 ASP C 121 5 6 HELIX 37 37 ASP C 122 ASN C 132 1 11 HELIX 38 38 THR C 138 LEU C 149 1 12 HELIX 39 39 GLY C 164 GLU C 178 1 15 HELIX 40 40 GLY D 15 ASN D 26 1 12 HELIX 41 41 GLN D 61 ASP D 65 5 5 HELIX 42 42 LEU D 67 TYR D 72 5 6 HELIX 43 43 SER D 86 LYS D 96 1 11 HELIX 44 44 LYS D 96 CYS D 105 1 10 HELIX 45 45 GLN D 116 ASP D 121 5 6 HELIX 46 46 ASP D 122 LYS D 131 1 10 HELIX 47 47 THR D 138 LEU D 149 1 12 HELIX 48 48 GLY D 164 LEU D 177 1 14 SHEET 1 A 2 LEU A3668 THR A3669 0 SHEET 2 A 2 VAL D 33 PRO D 34 -1 O VAL D 33 N THR A3669 SHEET 1 B 2 LEU B3668 THR B3669 0 SHEET 2 B 2 VAL C 33 PRO C 34 -1 O VAL C 33 N THR B3669 SHEET 1 C 6 TYR C 40 ILE C 46 0 SHEET 2 C 6 GLU C 49 PHE C 56 -1 O TYR C 51 N VAL C 44 SHEET 3 C 6 ILE C 4 GLY C 10 1 N CYS C 6 O GLY C 54 SHEET 4 C 6 VAL C 77 SER C 83 1 O CYS C 81 N VAL C 9 SHEET 5 C 6 PHE C 110 THR C 115 1 O VAL C 113 N VAL C 80 SHEET 6 C 6 TYR C 154 GLU C 156 1 O VAL C 155 N LEU C 112 SHEET 1 D 6 TYR D 40 ILE D 46 0 SHEET 2 D 6 GLU D 49 PHE D 56 -1 O LEU D 55 N TYR D 40 SHEET 3 D 6 ILE D 4 GLY D 10 1 N CYS D 6 O GLY D 54 SHEET 4 D 6 VAL D 77 SER D 83 1 O LEU D 79 N VAL D 9 SHEET 5 D 6 PHE D 110 THR D 115 1 O LEU D 111 N VAL D 80 SHEET 6 D 6 TYR D 154 GLU D 156 1 O VAL D 155 N LEU D 112 LINK O2B GDP C 200 MG MG C 189 1555 1555 2.30 LINK O THR D 35 MG MG D 189 1555 1555 2.35 LINK O2B GDP D 200 MG MG D 189 1555 1555 2.35 LINK O THR C 35 MG MG C 189 1555 1555 2.36 LINK OG1 THR C 17 MG MG C 189 1555 1555 2.37 LINK OG1 THR D 17 MG MG D 189 1555 1555 2.45 LINK MG MG C 189 O HOH C 238 1555 1555 2.39 LINK MG MG C 189 O HOH C 192 1555 1555 2.39 LINK MG MG D 189 O HOH D 692 1555 1555 2.41 LINK MG MG D 189 O HOH D 267 1555 1555 2.43 LINK MG MG C 189 O HOH C 191 1555 1555 2.50 LINK MG MG D 189 O HOH D 191 1555 1555 2.52 LINK CZ TYR C 32 O1P AMP C 201 1555 1555 1.39 LINK CZ TYR D 32 O1P AMP D 201 1555 1555 1.39 CISPEP 1 GLU A 3671 ASN A 3672 0 -20.15 CISPEP 2 GLU B 3671 ASN B 3672 0 -18.43 SITE 1 AC1 6 LYS A3532 HOH B 426 HOH B 546 HOH B 589 SITE 2 AC1 6 ARG B3660 LEU B3661 SITE 1 AC2 6 ARG A3660 LEU A3661 HOH B 298 HOH B 361 SITE 2 AC2 6 HOH B 632 LYS B3532 SITE 1 AC3 25 GLU B3671 ASN B3672 ASP C 11 ALA C 13 SITE 2 AC3 25 VAL C 14 GLY C 15 LYS C 16 THR C 17 SITE 3 AC3 25 CYS C 18 PHE C 28 GLN C 116 ASP C 118 SITE 4 AC3 25 LEU C 119 SER C 158 ALA C 159 LEU C 160 SITE 5 AC3 25 MG C 189 HOH C 192 HOH C 195 HOH C 198 SITE 6 AC3 25 HOH C 209 HOH C 221 HOH C 235 HOH C 238 SITE 7 AC3 25 HOH C 396 SITE 1 AC4 17 LYS B3670 GLU B3671 ASN B3672 ALA B3673 SITE 2 AC4 17 ILE B3714 GLU B3721 GLY B3722 ASN B3723 SITE 3 AC4 17 GLY B3724 ARG B3728 GLU B3751 PRO B3752 SITE 4 AC4 17 ILE B3755 GLN B3757 TYR C 32 HOH C 206 SITE 5 AC4 17 HOH C 217 SITE 1 AC5 6 THR C 17 THR C 35 HOH C 191 HOH C 192 SITE 2 AC5 6 GDP C 200 HOH C 238 SITE 1 AC6 9 LYS B3759 SER B3761 SER C 86 PRO C 87 SITE 2 AC6 9 SER C 88 GLN C 134 HOH C 284 HOH C 586 SITE 3 AC6 9 HOH C 595 SITE 1 AC7 24 GLU A3671 ASN A3672 ASP D 11 ALA D 13 SITE 2 AC7 24 VAL D 14 GLY D 15 LYS D 16 THR D 17 SITE 3 AC7 24 CYS D 18 PHE D 28 GLN D 116 ASP D 118 SITE 4 AC7 24 LEU D 119 SER D 158 ALA D 159 LEU D 160 SITE 5 AC7 24 MG D 189 HOH D 195 HOH D 198 HOH D 204 SITE 6 AC7 24 HOH D 222 HOH D 267 HOH D 433 HOH D 692 SITE 1 AC8 17 LYS A3670 GLU A3671 ASN A3672 ALA A3673 SITE 2 AC8 17 ILE A3714 GLU A3721 GLY A3722 ASN A3723 SITE 3 AC8 17 GLY A3724 ARG A3728 GLU A3751 PRO A3752 SITE 4 AC8 17 ILE A3755 GLN A3757 TYR D 32 HOH D 197 SITE 5 AC8 17 HOH D 472 SITE 1 AC9 6 THR D 17 THR D 35 HOH D 191 GDP D 200 SITE 2 AC9 6 HOH D 267 HOH D 692 SITE 1 BC1 8 LYS A3759 SER A3761 SER D 86 PRO D 87 SITE 2 BC1 8 SER D 88 GLN D 134 HOH D 629 HOH D 716 CRYST1 63.495 90.997 190.969 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015749 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010989 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005236 0.00000