HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-MAY-10 3N46 TITLE HUMAN FPPS COMPLEX WITH NOV_980 AND ZOLEDRONIC ACID/MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: F; COMPND 4 FRAGMENT: RESIDUES 72-419; COMPND 5 EC: 2.5.1.1, 2.5.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 TUNER (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS BISPHOSPHONATE; FRAGMENT-BASED SCREENING; TRANSFERASE; ISOPRENE KEYWDS 2 BIOSYNTHESIS; CHOLESTEROL BIOSYNTHESIS, RANSFERASE-TRANSFERASE KEYWDS 3 INHIBITOR COMPLEX, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.-M.RONDEAU REVDAT 3 21-FEB-24 3N46 1 REMARK SEQADV LINK REVDAT 2 01-SEP-10 3N46 1 JRNL REVDAT 1 18-AUG-10 3N46 0 JRNL AUTH W.JAHNKE,J.M.RONDEAU,S.COTESTA,A.MARZINZIK,X.PELLE,M.GEISER, JRNL AUTH 2 A.STRAUSS,M.GOTTE,F.BITSCH,R.HEMMIG,C.HENRY,S.LEHMANN, JRNL AUTH 3 J.F.GLICKMAN,T.P.RODDY,S.J.STOUT,J.R.GREEN JRNL TITL ALLOSTERIC NON-BISPHOSPHONATE FPPS INHIBITORS IDENTIFIED BY JRNL TITL 2 FRAGMENT-BASED DISCOVERY. JRNL REF NAT.CHEM.BIOL. V. 6 660 2010 JRNL REFN ISSN 1552-4450 JRNL PMID 20711197 JRNL DOI 10.1038/NCHEMBIO.421 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.M.RONDEAU,F.BITSCH,E.BOURGIER,M.GEISER,R.HEMMIG,M.KROEMER, REMARK 1 AUTH 2 S.LEHMANN,P.RAMAGE,S.RIEFFEL,A.STRAUSS,J.R.GREEN,W.JAHNKE REMARK 1 TITL STRUCTURAL BASIS FOR THE EXCEPTIONAL IN VIVO EFFICACY OF REMARK 1 TITL 2 BISPHOSPHONATE DRUGS REMARK 1 REF CHEMMEDCHEM V. 1 267 2006 REMARK 1 REFN ISSN 1860-7179 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2563747.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 18838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1884 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 18838 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2761 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 307 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2774 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.78000 REMARK 3 B22 (A**2) : -15.78000 REMARK 3 B33 (A**2) : 31.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.48 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.55 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.850 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.980 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.940 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.300 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 47.97 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ZOMETA.PRM REMARK 3 PARAMETER FILE 4 : NOV_980.PRM REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3N46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059357. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97936 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18838 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.35700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: APRV REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M SODIUM POTASSIUM PHOSPHATE, 25% REMARK 280 GLYCEROL, PH 5.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.43050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.42650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.42650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.71525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.42650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.42650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.14575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.42650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.42650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.71525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.42650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.42650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.14575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.43050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 110.85300 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 110.85300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 35.43050 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY F 4 REMARK 465 PRO F 5 REMARK 465 ASN F 6 REMARK 465 SER F 7 REMARK 465 ARG F 351 REMARK 465 ARG F 352 REMARK 465 LYS F 353 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO F 74 -38.33 -37.22 REMARK 500 GLN F 77 50.25 -93.54 REMARK 500 ASP F 78 -176.06 -61.65 REMARK 500 VAL F 124 -72.58 -89.26 REMARK 500 ASP F 184 86.90 -159.81 REMARK 500 THR F 201 -53.64 -131.78 REMARK 500 ARG F 277 46.13 -109.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 2 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 243 OD2 REMARK 620 2 ZOL F 354 O12 94.9 REMARK 620 3 ZOL F 354 O17 89.6 83.4 REMARK 620 4 HOH F 381 O 86.8 161.3 77.9 REMARK 620 5 HOH F 402 O 162.6 97.9 80.3 77.3 REMARK 620 6 HOH F 410 O 93.9 101.4 173.8 97.1 95.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 3 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 103 OD2 REMARK 620 2 ASP F 107 OD2 99.5 REMARK 620 3 ZOL F 354 O11 104.6 79.2 REMARK 620 4 HOH F 361 O 90.8 167.4 91.2 REMARK 620 5 HOH F 385 O 176.1 84.3 74.8 85.4 REMARK 620 6 HOH F 413 O 98.6 96.3 156.7 89.3 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 355 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 103 OD1 REMARK 620 2 ASP F 107 OD2 77.8 REMARK 620 3 ZOL F 354 O15 105.2 176.2 REMARK 620 4 ZOL F 354 O11 97.5 80.4 96.8 REMARK 620 5 HOH F 368 O 159.5 83.6 93.8 87.8 REMARK 620 6 HOH F 376 O 83.2 89.4 93.3 169.3 88.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3N5 F 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZOL F 354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG F 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG F 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG F 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 F 356 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N1V RELATED DB: PDB REMARK 900 HUMAN FPPS COMPLEX WITH FBS_01 REMARK 900 RELATED ID: 3N1W RELATED DB: PDB REMARK 900 HUMAN FPPS COMPLEX WITH FBS_02 REMARK 900 RELATED ID: 3N3L RELATED DB: PDB REMARK 900 HUMAN FPPS COMPLEX WITH FBS_03 REMARK 900 RELATED ID: 3N45 RELATED DB: PDB REMARK 900 HUMAN FPPS COMPLEX WITH FBS_04 AND ZOLEDRONIC ACID/MG2+ REMARK 900 RELATED ID: 3N49 RELATED DB: PDB REMARK 900 HUMAN FPPS COMPLEX WITH NOV_982 REMARK 900 RELATED ID: 3N5H RELATED DB: PDB REMARK 900 HUMAN FPPS COMPLEX WITH NOV_304 REMARK 900 RELATED ID: 3N5J RELATED DB: PDB REMARK 900 HUMAN FPPS COMPLEX WITH NOV_311 REMARK 900 RELATED ID: 3N6K RELATED DB: PDB REMARK 900 HUMAN FPPS COMPLEX WITH NOV_823 DBREF 3N46 F 6 353 UNP P14324 FPPS_HUMAN 72 419 SEQADV 3N46 GLY F 4 UNP P14324 EXPRESSION TAG SEQADV 3N46 PRO F 5 UNP P14324 EXPRESSION TAG SEQRES 1 F 350 GLY PRO ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP SEQRES 2 F 350 PHE VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR SEQRES 3 F 350 GLU ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE SEQRES 4 F 350 ALA ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY SEQRES 5 F 350 GLY LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE SEQRES 6 F 350 ARG GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER SEQRES 7 F 350 LEU GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU SEQRES 8 F 350 LEU GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SEQRES 9 F 350 SER SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN SEQRES 10 F 350 LYS PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN SEQRES 11 F 350 LEU LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR SEQRES 12 F 350 CYS ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU SEQRES 13 F 350 PHE LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR SEQRES 14 F 350 LEU ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU SEQRES 15 F 350 VAL ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS SEQRES 16 F 350 TYR LYS THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA SEQRES 17 F 350 ALA ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU SEQRES 18 F 350 HIS ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU SEQRES 19 F 350 PHE PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY SEQRES 20 F 350 ASP PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN SEQRES 21 F 350 ASP ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN SEQRES 22 F 350 ARG ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN SEQRES 23 F 350 TYR GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS SEQRES 24 F 350 ALA LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU SEQRES 25 F 350 GLN TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU SEQRES 26 F 350 ILE GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE SEQRES 27 F 350 LEU GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET 3N5 F 1 22 HET ZOL F 354 16 HET MG F 355 1 HET MG F 2 1 HET MG F 3 1 HET PO4 F 356 5 HETNAM 3N5 (2R)-1-[(BENZYLOXY)CARBONYL]-2,3-DIHYDRO-1H-INDOLE-2- HETNAM 2 3N5 CARBOXYLIC ACID HETNAM ZOL ZOLEDRONIC ACID HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETSYN ZOL (1-HYDROXY-2-IMIDAZOL-1-YLETHYLIDENE)DIPHOSPHONIC ACID FORMUL 2 3N5 C17 H15 N O4 FORMUL 3 ZOL C5 H10 N2 O7 P2 FORMUL 4 MG 3(MG 2+) FORMUL 7 PO4 O4 P 3- FORMUL 8 HOH *138(H2 O) HELIX 1 1 TYR F 10 GLU F 30 1 21 HELIX 2 2 HIS F 35 GLU F 37 5 3 HELIX 3 3 ILE F 38 ALA F 53 1 16 HELIX 4 4 TYR F 58 VAL F 72 1 15 HELIX 5 5 GLU F 73 GLN F 77 5 5 HELIX 6 6 ASP F 78 ASP F 107 1 30 HELIX 7 7 TRP F 118 LYS F 121 5 4 HELIX 8 8 VAL F 124 LEU F 126 5 3 HELIX 9 9 ASP F 127 ARG F 148 1 22 HELIX 10 10 TYR F 152 ALA F 178 1 27 HELIX 11 11 ASP F 184 PHE F 188 5 5 HELIX 12 12 THR F 189 THR F 201 1 13 HELIX 13 13 THR F 201 PHE F 206 1 6 HELIX 14 14 PHE F 206 ALA F 217 1 12 HELIX 15 15 GLY F 221 GLY F 250 1 30 HELIX 16 16 ASP F 251 GLY F 256 1 6 HELIX 17 17 SER F 268 ARG F 277 1 10 HELIX 18 18 THR F 279 GLU F 288 1 10 HELIX 19 19 GLU F 294 LEU F 308 1 15 HELIX 20 20 ASP F 309 ALA F 333 1 25 HELIX 21 21 PRO F 337 TYR F 349 1 13 SHEET 1 A 2 THR F 111 ARG F 112 0 SHEET 2 A 2 GLN F 115 ILE F 116 -1 O GLN F 115 N ARG F 112 LINK MG MG F 2 OD2 ASP F 243 1555 1555 2.09 LINK MG MG F 2 O12 ZOL F 354 1555 1555 1.96 LINK MG MG F 2 O17 ZOL F 354 1555 1555 2.26 LINK MG MG F 2 O HOH F 381 1555 1555 2.20 LINK MG MG F 2 O HOH F 402 1555 1555 2.10 LINK MG MG F 2 O HOH F 410 1555 1555 1.92 LINK MG MG F 3 OD2 ASP F 103 1555 1555 2.00 LINK MG MG F 3 OD2 ASP F 107 1555 1555 2.32 LINK MG MG F 3 O11 ZOL F 354 1555 1555 2.25 LINK MG MG F 3 O HOH F 361 1555 1555 2.27 LINK MG MG F 3 O HOH F 385 1555 1555 2.17 LINK MG MG F 3 O HOH F 413 1555 1555 2.18 LINK OD1 ASP F 103 MG MG F 355 1555 1555 2.12 LINK OD2 ASP F 107 MG MG F 355 1555 1555 2.39 LINK O15 ZOL F 354 MG MG F 355 1555 1555 1.92 LINK O11 ZOL F 354 MG MG F 355 1555 1555 2.11 LINK MG MG F 355 O HOH F 368 1555 1555 2.08 LINK MG MG F 355 O HOH F 376 1555 1555 2.26 CISPEP 1 ALA F 334 PRO F 335 0 -0.46 SITE 1 AC1 10 LYS F 57 ASN F 59 ARG F 60 THR F 63 SITE 2 AC1 10 SER F 205 PHE F 239 LEU F 344 LYS F 347 SITE 3 AC1 10 PO4 F 356 HOH F 372 SITE 1 AC2 24 MG F 2 MG F 3 LEU F 100 ASP F 103 SITE 2 AC2 24 ASP F 107 ARG F 112 GLN F 171 LYS F 200 SITE 3 AC2 24 THR F 201 GLN F 240 ASP F 243 LYS F 257 SITE 4 AC2 24 MG F 355 HOH F 361 HOH F 368 HOH F 369 SITE 5 AC2 24 HOH F 376 HOH F 381 HOH F 382 HOH F 385 SITE 6 AC2 24 HOH F 390 HOH F 402 HOH F 410 HOH F 455 SITE 1 AC3 6 MG F 3 ASP F 103 ASP F 107 ZOL F 354 SITE 2 AC3 6 HOH F 368 HOH F 376 SITE 1 AC4 5 ASP F 243 ZOL F 354 HOH F 381 HOH F 402 SITE 2 AC4 5 HOH F 410 SITE 1 AC5 7 ASP F 103 ASP F 107 ZOL F 354 MG F 355 SITE 2 AC5 7 HOH F 361 HOH F 385 HOH F 413 SITE 1 AC6 9 3N5 F 1 GLY F 56 LYS F 57 ARG F 60 SITE 2 AC6 9 GLN F 96 ARG F 113 HOH F 366 HOH F 372 SITE 3 AC6 9 HOH F 389 CRYST1 110.853 110.853 70.861 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009021 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014112 0.00000