data_3N4J # _entry.id 3N4J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3N4J pdb_00003n4j 10.2210/pdb3n4j/pdb RCSB RCSB059370 ? ? WWPDB D_1000059370 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB IDP90718 . unspecified PDB 3N4K . unspecified # _pdbx_database_status.entry_id 3N4J _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-05-21 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Maltseva, N.' 2 'Peterson, S.' 3 'Anderson, W.F.' 4 'Joachimiak, A.' 5 'Center for Structural Genomics of Infectious Diseases (CSGID)' 6 # _citation.id primary _citation.title 'X-ray crystal structure of putative RNA methyltransferase from Yersinia pestis.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Osipiuk, J.' 1 ? primary 'Maltseva, N.' 2 ? primary 'Peterson, S.' 3 ? primary 'Anderson, W.F.' 4 ? primary 'Joachimiak, A.' 5 ? # _cell.length_a 79.719 _cell.length_b 79.719 _cell.length_c 44.638 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3N4J _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 3N4J _symmetry.Int_Tables_number 152 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA methyltransferase' 18528.088 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 144 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SNAMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQP ARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPG ALLKE ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQP ARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPG ALLKE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier IDP90718 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MET n 1 5 LEU n 1 6 ASN n 1 7 ILE n 1 8 VAL n 1 9 LEU n 1 10 PHE n 1 11 GLU n 1 12 PRO n 1 13 GLU n 1 14 ILE n 1 15 PRO n 1 16 PRO n 1 17 ASN n 1 18 THR n 1 19 GLY n 1 20 ASN n 1 21 ILE n 1 22 ILE n 1 23 ARG n 1 24 LEU n 1 25 CYS n 1 26 ALA n 1 27 ASN n 1 28 THR n 1 29 GLY n 1 30 CYS n 1 31 GLN n 1 32 LEU n 1 33 HIS n 1 34 LEU n 1 35 ILE n 1 36 LYS n 1 37 PRO n 1 38 LEU n 1 39 GLY n 1 40 PHE n 1 41 THR n 1 42 TRP n 1 43 ASP n 1 44 ASP n 1 45 LYS n 1 46 ARG n 1 47 LEU n 1 48 ARG n 1 49 ARG n 1 50 ALA n 1 51 GLY n 1 52 LEU n 1 53 ASP n 1 54 TYR n 1 55 HIS n 1 56 GLU n 1 57 PHE n 1 58 ALA n 1 59 ASP n 1 60 ILE n 1 61 LYS n 1 62 HIS n 1 63 HIS n 1 64 HIS n 1 65 ASP n 1 66 TYR n 1 67 GLN n 1 68 ALA n 1 69 PHE n 1 70 LEU n 1 71 ASP n 1 72 SER n 1 73 GLU n 1 74 LYS n 1 75 LEU n 1 76 ASP n 1 77 SER n 1 78 THR n 1 79 GLN n 1 80 PRO n 1 81 ALA n 1 82 ARG n 1 83 LEU n 1 84 PHE n 1 85 ALA n 1 86 LEU n 1 87 THR n 1 88 THR n 1 89 LYS n 1 90 GLY n 1 91 THR n 1 92 PRO n 1 93 ALA n 1 94 HIS n 1 95 SER n 1 96 ALA n 1 97 VAL n 1 98 SER n 1 99 TYR n 1 100 GLN n 1 101 ALA n 1 102 ASN n 1 103 ASP n 1 104 TYR n 1 105 LEU n 1 106 LEU n 1 107 PHE n 1 108 GLY n 1 109 PRO n 1 110 GLU n 1 111 THR n 1 112 ARG n 1 113 GLY n 1 114 LEU n 1 115 PRO n 1 116 ALA n 1 117 TYR n 1 118 ILE n 1 119 LEU n 1 120 ASP n 1 121 ALA n 1 122 LEU n 1 123 PRO n 1 124 ALA n 1 125 GLN n 1 126 GLN n 1 127 LYS n 1 128 ILE n 1 129 ARG n 1 130 ILE n 1 131 PRO n 1 132 MET n 1 133 GLN n 1 134 ALA n 1 135 ASP n 1 136 SER n 1 137 ARG n 1 138 SER n 1 139 MET n 1 140 ASN n 1 141 LEU n 1 142 SER n 1 143 ASN n 1 144 ALA n 1 145 VAL n 1 146 SER n 1 147 VAL n 1 148 VAL n 1 149 VAL n 1 150 TYR n 1 151 GLU n 1 152 ALA n 1 153 TRP n 1 154 ARG n 1 155 GLN n 1 156 LEU n 1 157 GLY n 1 158 TYR n 1 159 PRO n 1 160 GLY n 1 161 ALA n 1 162 LEU n 1 163 LEU n 1 164 LYS n 1 165 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus cspR _entity_src_gen.pdbx_gene_src_gene 'cspR, YPO0071, YP_0071' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain CO92 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Yersinia pestis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 214092 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code q74y93_YERPE _struct_ref.pdbx_db_accession Q74Y93 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARL FALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPGALL KE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3N4J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 165 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q74Y93 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 162 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 162 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3N4J SER A 1 ? UNP Q74Y93 ? ? 'expression tag' -2 1 1 3N4J ASN A 2 ? UNP Q74Y93 ? ? 'expression tag' -1 2 1 3N4J ALA A 3 ? UNP Q74Y93 ? ? 'expression tag' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3N4J _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.pdbx_details '0.2 M ammonium sulfate, 0.1 M Tris buffer, 25% PEG MME 5000, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-03-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3N4J _reflns.d_resolution_high 1.470 _reflns.d_resolution_low 34.5 _reflns.number_obs 26316 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_netI_over_sigmaI 15.500 _reflns.pdbx_chi_squared 1.867 _reflns.pdbx_redundancy 17.200 _reflns.percent_possible_obs 94.100 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 26316 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 33.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.47 _reflns_shell.d_res_low 1.50 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.811 _reflns_shell.meanI_over_sigI_obs 2.91 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.090 _reflns_shell.pdbx_redundancy 9.30 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 911 _reflns_shell.percent_possible_all 65.00 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3N4J _refine.ls_d_res_high 1.470 _refine.ls_d_res_low 34.500 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 94.110 _refine.ls_number_reflns_obs 26316 _refine.ls_number_reflns_all 26316 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY' _refine.ls_R_factor_all 0.145 _refine.ls_R_factor_obs 0.145 _refine.ls_R_factor_R_work 0.143 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.186 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1336 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 22.580 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.780 _refine.aniso_B[2][2] 0.780 _refine.aniso_B[3][3] -1.160 _refine.aniso_B[1][2] 0.390 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.979 _refine.correlation_coeff_Fo_to_Fc_free 0.967 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.069 _refine.overall_SU_ML 0.041 _refine.overall_SU_B 2.381 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 1MXI _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 76.98 _refine.B_iso_min 14.02 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I 0 _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1273 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 144 _refine_hist.number_atoms_total 1427 _refine_hist.d_res_high 1.470 _refine_hist.d_res_low 34.500 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1387 0.019 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 938 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1907 1.670 1.972 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2300 1.006 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 181 5.551 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 67 35.280 23.881 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 230 13.223 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 22.120 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 209 0.117 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1570 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 282 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 847 1.883 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 334 0.606 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1376 2.799 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 540 4.135 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 520 5.637 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2325 1.700 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.470 _refine_ls_shell.d_res_low 1.511 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 66.630 _refine_ls_shell.number_reflns_R_work 1277 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.228 _refine_ls_shell.R_factor_R_free 0.293 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 71 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1348 _refine_ls_shell.number_reflns_obs 1348 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3N4J _struct.title 'Putative RNA methyltransferase from Yersinia pestis' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3N4J _struct_keywords.text 'RNA methyltransferase, Center for Structural Genomics of Infectious Diseases, CSGID, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 14 ? GLY A 29 ? ILE A 11 GLY A 26 1 ? 16 HELX_P HELX_P2 2 ASP A 43 ? ALA A 50 ? ASP A 40 ALA A 47 1 ? 8 HELX_P HELX_P3 3 ASP A 53 ? ALA A 58 ? ASP A 50 ALA A 55 1 ? 6 HELX_P HELX_P4 4 ASP A 65 ? GLU A 73 ? ASP A 62 GLU A 70 1 ? 9 HELX_P HELX_P5 5 PRO A 115 ? ASP A 120 ? PRO A 112 ASP A 117 1 ? 6 HELX_P HELX_P6 6 ALA A 121 ? LEU A 122 ? ALA A 118 LEU A 119 5 ? 2 HELX_P HELX_P7 7 PRO A 123 ? GLN A 125 ? PRO A 120 GLN A 122 5 ? 3 HELX_P HELX_P8 8 ASN A 140 ? GLY A 157 ? ASN A 137 GLY A 154 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 36 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 33 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 37 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 34 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.70 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 61 ? HIS A 63 ? LYS A 58 HIS A 60 A 2 GLN A 31 ? ILE A 35 ? GLN A 28 ILE A 32 A 3 LEU A 5 ? PHE A 10 ? LEU A 2 PHE A 7 A 4 ASP A 103 ? PHE A 107 ? ASP A 100 PHE A 104 A 5 LEU A 83 ? LEU A 86 ? LEU A 80 LEU A 83 A 6 LYS A 127 ? ILE A 128 ? LYS A 124 ILE A 125 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O HIS A 63 ? O HIS A 60 N LEU A 34 ? N LEU A 31 A 2 3 O ILE A 35 ? O ILE A 32 N LEU A 9 ? N LEU A 6 A 3 4 N VAL A 8 ? N VAL A 5 O LEU A 105 ? O LEU A 102 A 4 5 O LEU A 106 ? O LEU A 103 N PHE A 84 ? N PHE A 81 A 5 6 N ALA A 85 ? N ALA A 82 O ILE A 128 ? O ILE A 125 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 501 ? 6 'BINDING SITE FOR RESIDUE SO4 A 501' AC2 Software A SO4 502 ? 3 'BINDING SITE FOR RESIDUE SO4 A 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 THR A 87 ? THR A 84 . ? 1_555 ? 2 AC1 6 THR A 88 ? THR A 85 . ? 1_555 ? 3 AC1 6 LYS A 89 ? LYS A 86 . ? 1_555 ? 4 AC1 6 GLY A 113 ? GLY A 110 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 179 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 188 . ? 1_555 ? 7 AC2 3 ARG A 137 ? ARG A 134 . ? 1_555 ? 8 AC2 3 SER A 138 ? SER A 135 . ? 1_555 ? 9 AC2 3 HOH D . ? HOH A 261 . ? 1_555 ? # _atom_sites.entry_id 3N4J _atom_sites.fract_transf_matrix[1][1] 0.012544 _atom_sites.fract_transf_matrix[1][2] 0.007242 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014485 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022402 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 LEU 5 2 2 LEU LEU A . n A 1 6 ASN 6 3 3 ASN ASN A . n A 1 7 ILE 7 4 4 ILE ILE A . n A 1 8 VAL 8 5 5 VAL VAL A . n A 1 9 LEU 9 6 6 LEU LEU A . n A 1 10 PHE 10 7 7 PHE PHE A . n A 1 11 GLU 11 8 8 GLU GLU A . n A 1 12 PRO 12 9 9 PRO PRO A . n A 1 13 GLU 13 10 10 GLU GLU A . n A 1 14 ILE 14 11 11 ILE ILE A . n A 1 15 PRO 15 12 12 PRO PRO A . n A 1 16 PRO 16 13 13 PRO PRO A . n A 1 17 ASN 17 14 14 ASN ASN A . n A 1 18 THR 18 15 15 THR THR A . n A 1 19 GLY 19 16 16 GLY GLY A . n A 1 20 ASN 20 17 17 ASN ASN A . n A 1 21 ILE 21 18 18 ILE ILE A . n A 1 22 ILE 22 19 19 ILE ILE A . n A 1 23 ARG 23 20 20 ARG ARG A . n A 1 24 LEU 24 21 21 LEU LEU A . n A 1 25 CYS 25 22 22 CYS CYS A . n A 1 26 ALA 26 23 23 ALA ALA A . n A 1 27 ASN 27 24 24 ASN ASN A . n A 1 28 THR 28 25 25 THR THR A . n A 1 29 GLY 29 26 26 GLY GLY A . n A 1 30 CYS 30 27 27 CYS CYS A . n A 1 31 GLN 31 28 28 GLN GLN A . n A 1 32 LEU 32 29 29 LEU LEU A . n A 1 33 HIS 33 30 30 HIS HIS A . n A 1 34 LEU 34 31 31 LEU LEU A . n A 1 35 ILE 35 32 32 ILE ILE A . n A 1 36 LYS 36 33 33 LYS LYS A . n A 1 37 PRO 37 34 34 PRO PRO A . n A 1 38 LEU 38 35 35 LEU LEU A . n A 1 39 GLY 39 36 36 GLY GLY A . n A 1 40 PHE 40 37 37 PHE PHE A . n A 1 41 THR 41 38 38 THR THR A . n A 1 42 TRP 42 39 39 TRP TRP A . n A 1 43 ASP 43 40 40 ASP ASP A . n A 1 44 ASP 44 41 41 ASP ASP A . n A 1 45 LYS 45 42 42 LYS LYS A . n A 1 46 ARG 46 43 43 ARG ARG A . n A 1 47 LEU 47 44 44 LEU LEU A . n A 1 48 ARG 48 45 45 ARG ARG A . n A 1 49 ARG 49 46 46 ARG ARG A . n A 1 50 ALA 50 47 47 ALA ALA A . n A 1 51 GLY 51 48 48 GLY GLY A . n A 1 52 LEU 52 49 49 LEU LEU A . n A 1 53 ASP 53 50 50 ASP ASP A . n A 1 54 TYR 54 51 51 TYR TYR A . n A 1 55 HIS 55 52 52 HIS HIS A . n A 1 56 GLU 56 53 53 GLU GLU A . n A 1 57 PHE 57 54 54 PHE PHE A . n A 1 58 ALA 58 55 55 ALA ALA A . n A 1 59 ASP 59 56 56 ASP ASP A . n A 1 60 ILE 60 57 57 ILE ILE A . n A 1 61 LYS 61 58 58 LYS LYS A . n A 1 62 HIS 62 59 59 HIS HIS A . n A 1 63 HIS 63 60 60 HIS HIS A . n A 1 64 HIS 64 61 61 HIS HIS A . n A 1 65 ASP 65 62 62 ASP ASP A . n A 1 66 TYR 66 63 63 TYR TYR A . n A 1 67 GLN 67 64 64 GLN GLN A . n A 1 68 ALA 68 65 65 ALA ALA A . n A 1 69 PHE 69 66 66 PHE PHE A . n A 1 70 LEU 70 67 67 LEU LEU A . n A 1 71 ASP 71 68 68 ASP ASP A . n A 1 72 SER 72 69 69 SER SER A . n A 1 73 GLU 73 70 70 GLU GLU A . n A 1 74 LYS 74 71 71 LYS LYS A . n A 1 75 LEU 75 72 72 LEU LEU A . n A 1 76 ASP 76 73 73 ASP ASP A . n A 1 77 SER 77 74 74 SER SER A . n A 1 78 THR 78 75 75 THR THR A . n A 1 79 GLN 79 76 76 GLN GLN A . n A 1 80 PRO 80 77 77 PRO PRO A . n A 1 81 ALA 81 78 78 ALA ALA A . n A 1 82 ARG 82 79 79 ARG ARG A . n A 1 83 LEU 83 80 80 LEU LEU A . n A 1 84 PHE 84 81 81 PHE PHE A . n A 1 85 ALA 85 82 82 ALA ALA A . n A 1 86 LEU 86 83 83 LEU LEU A . n A 1 87 THR 87 84 84 THR THR A . n A 1 88 THR 88 85 85 THR THR A . n A 1 89 LYS 89 86 86 LYS LYS A . n A 1 90 GLY 90 87 87 GLY GLY A . n A 1 91 THR 91 88 88 THR THR A . n A 1 92 PRO 92 89 89 PRO PRO A . n A 1 93 ALA 93 90 90 ALA ALA A . n A 1 94 HIS 94 91 91 HIS HIS A . n A 1 95 SER 95 92 92 SER SER A . n A 1 96 ALA 96 93 93 ALA ALA A . n A 1 97 VAL 97 94 94 VAL VAL A . n A 1 98 SER 98 95 95 SER SER A . n A 1 99 TYR 99 96 96 TYR TYR A . n A 1 100 GLN 100 97 97 GLN GLN A . n A 1 101 ALA 101 98 98 ALA ALA A . n A 1 102 ASN 102 99 99 ASN ASN A . n A 1 103 ASP 103 100 100 ASP ASP A . n A 1 104 TYR 104 101 101 TYR TYR A . n A 1 105 LEU 105 102 102 LEU LEU A . n A 1 106 LEU 106 103 103 LEU LEU A . n A 1 107 PHE 107 104 104 PHE PHE A . n A 1 108 GLY 108 105 105 GLY GLY A . n A 1 109 PRO 109 106 106 PRO PRO A . n A 1 110 GLU 110 107 107 GLU GLU A . n A 1 111 THR 111 108 108 THR THR A . n A 1 112 ARG 112 109 109 ARG ARG A . n A 1 113 GLY 113 110 110 GLY GLY A . n A 1 114 LEU 114 111 111 LEU LEU A . n A 1 115 PRO 115 112 112 PRO PRO A . n A 1 116 ALA 116 113 113 ALA ALA A . n A 1 117 TYR 117 114 114 TYR TYR A . n A 1 118 ILE 118 115 115 ILE ILE A . n A 1 119 LEU 119 116 116 LEU LEU A . n A 1 120 ASP 120 117 117 ASP ASP A . n A 1 121 ALA 121 118 118 ALA ALA A . n A 1 122 LEU 122 119 119 LEU LEU A . n A 1 123 PRO 123 120 120 PRO PRO A . n A 1 124 ALA 124 121 121 ALA ALA A . n A 1 125 GLN 125 122 122 GLN GLN A . n A 1 126 GLN 126 123 123 GLN GLN A . n A 1 127 LYS 127 124 124 LYS LYS A . n A 1 128 ILE 128 125 125 ILE ILE A . n A 1 129 ARG 129 126 126 ARG ARG A . n A 1 130 ILE 130 127 127 ILE ILE A . n A 1 131 PRO 131 128 128 PRO PRO A . n A 1 132 MET 132 129 129 MET MET A . n A 1 133 GLN 133 130 130 GLN GLN A . n A 1 134 ALA 134 131 131 ALA ALA A . n A 1 135 ASP 135 132 132 ASP ASP A . n A 1 136 SER 136 133 133 SER SER A . n A 1 137 ARG 137 134 134 ARG ARG A . n A 1 138 SER 138 135 135 SER SER A . n A 1 139 MET 139 136 136 MET MET A . n A 1 140 ASN 140 137 137 ASN ASN A . n A 1 141 LEU 141 138 138 LEU LEU A . n A 1 142 SER 142 139 139 SER SER A . n A 1 143 ASN 143 140 140 ASN ASN A . n A 1 144 ALA 144 141 141 ALA ALA A . n A 1 145 VAL 145 142 142 VAL VAL A . n A 1 146 SER 146 143 143 SER SER A . n A 1 147 VAL 147 144 144 VAL VAL A . n A 1 148 VAL 148 145 145 VAL VAL A . n A 1 149 VAL 149 146 146 VAL VAL A . n A 1 150 TYR 150 147 147 TYR TYR A . n A 1 151 GLU 151 148 148 GLU GLU A . n A 1 152 ALA 152 149 149 ALA ALA A . n A 1 153 TRP 153 150 150 TRP TRP A . n A 1 154 ARG 154 151 151 ARG ARG A . n A 1 155 GLN 155 152 152 GLN GLN A . n A 1 156 LEU 156 153 153 LEU LEU A . n A 1 157 GLY 157 154 154 GLY GLY A . n A 1 158 TYR 158 155 155 TYR TYR A . n A 1 159 PRO 159 156 156 PRO PRO A . n A 1 160 GLY 160 157 157 GLY GLY A . n A 1 161 ALA 161 158 158 ALA ALA A . n A 1 162 LEU 162 159 159 LEU LEU A . n A 1 163 LEU 163 160 160 LEU LEU A . n A 1 164 LYS 164 161 ? ? ? A . n A 1 165 GLU 165 162 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Center for Structural Genomics of Infectious Diseases' _pdbx_SG_project.initial_of_center CSGID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 501 501 SO4 SO4 A . C 2 SO4 1 502 502 SO4 SO4 A . D 3 HOH 1 163 1 HOH HOH A . D 3 HOH 2 164 2 HOH HOH A . D 3 HOH 3 165 3 HOH HOH A . D 3 HOH 4 166 4 HOH HOH A . D 3 HOH 5 167 5 HOH HOH A . D 3 HOH 6 168 6 HOH HOH A . D 3 HOH 7 169 7 HOH HOH A . D 3 HOH 8 170 8 HOH HOH A . D 3 HOH 9 171 9 HOH HOH A . D 3 HOH 10 172 10 HOH HOH A . D 3 HOH 11 173 11 HOH HOH A . D 3 HOH 12 174 12 HOH HOH A . D 3 HOH 13 175 13 HOH HOH A . D 3 HOH 14 176 14 HOH HOH A . D 3 HOH 15 177 15 HOH HOH A . D 3 HOH 16 178 16 HOH HOH A . D 3 HOH 17 179 17 HOH HOH A . D 3 HOH 18 180 18 HOH HOH A . D 3 HOH 19 181 19 HOH HOH A . D 3 HOH 20 182 20 HOH HOH A . D 3 HOH 21 183 21 HOH HOH A . D 3 HOH 22 184 22 HOH HOH A . D 3 HOH 23 185 24 HOH HOH A . D 3 HOH 24 186 25 HOH HOH A . D 3 HOH 25 187 26 HOH HOH A . D 3 HOH 26 188 27 HOH HOH A . D 3 HOH 27 189 28 HOH HOH A . D 3 HOH 28 190 29 HOH HOH A . D 3 HOH 29 191 30 HOH HOH A . D 3 HOH 30 192 31 HOH HOH A . D 3 HOH 31 193 32 HOH HOH A . D 3 HOH 32 194 33 HOH HOH A . D 3 HOH 33 195 34 HOH HOH A . D 3 HOH 34 196 35 HOH HOH A . D 3 HOH 35 197 36 HOH HOH A . D 3 HOH 36 198 37 HOH HOH A . D 3 HOH 37 199 38 HOH HOH A . D 3 HOH 38 200 39 HOH HOH A . D 3 HOH 39 201 40 HOH HOH A . D 3 HOH 40 202 41 HOH HOH A . D 3 HOH 41 203 42 HOH HOH A . D 3 HOH 42 204 43 HOH HOH A . D 3 HOH 43 205 44 HOH HOH A . D 3 HOH 44 206 45 HOH HOH A . D 3 HOH 45 207 46 HOH HOH A . D 3 HOH 46 208 47 HOH HOH A . D 3 HOH 47 209 48 HOH HOH A . D 3 HOH 48 210 49 HOH HOH A . D 3 HOH 49 211 50 HOH HOH A . D 3 HOH 50 212 51 HOH HOH A . D 3 HOH 51 213 52 HOH HOH A . D 3 HOH 52 214 53 HOH HOH A . D 3 HOH 53 215 54 HOH HOH A . D 3 HOH 54 216 55 HOH HOH A . D 3 HOH 55 217 56 HOH HOH A . D 3 HOH 56 218 57 HOH HOH A . D 3 HOH 57 219 58 HOH HOH A . D 3 HOH 58 220 59 HOH HOH A . D 3 HOH 59 221 60 HOH HOH A . D 3 HOH 60 222 61 HOH HOH A . D 3 HOH 61 223 62 HOH HOH A . D 3 HOH 62 224 63 HOH HOH A . D 3 HOH 63 225 64 HOH HOH A . D 3 HOH 64 226 65 HOH HOH A . D 3 HOH 65 227 66 HOH HOH A . D 3 HOH 66 228 67 HOH HOH A . D 3 HOH 67 229 68 HOH HOH A . D 3 HOH 68 230 69 HOH HOH A . D 3 HOH 69 231 70 HOH HOH A . D 3 HOH 70 232 71 HOH HOH A . D 3 HOH 71 233 72 HOH HOH A . D 3 HOH 72 234 73 HOH HOH A . D 3 HOH 73 235 74 HOH HOH A . D 3 HOH 74 236 75 HOH HOH A . D 3 HOH 75 237 76 HOH HOH A . D 3 HOH 76 238 77 HOH HOH A . D 3 HOH 77 239 78 HOH HOH A . D 3 HOH 78 240 79 HOH HOH A . D 3 HOH 79 241 80 HOH HOH A . D 3 HOH 80 242 81 HOH HOH A . D 3 HOH 81 243 82 HOH HOH A . D 3 HOH 82 244 83 HOH HOH A . D 3 HOH 83 245 84 HOH HOH A . D 3 HOH 84 246 85 HOH HOH A . D 3 HOH 85 247 86 HOH HOH A . D 3 HOH 86 248 87 HOH HOH A . D 3 HOH 87 249 88 HOH HOH A . D 3 HOH 88 250 89 HOH HOH A . D 3 HOH 89 251 90 HOH HOH A . D 3 HOH 90 252 91 HOH HOH A . D 3 HOH 91 253 92 HOH HOH A . D 3 HOH 92 254 93 HOH HOH A . D 3 HOH 93 255 94 HOH HOH A . D 3 HOH 94 256 95 HOH HOH A . D 3 HOH 95 257 96 HOH HOH A . D 3 HOH 96 258 97 HOH HOH A . D 3 HOH 97 259 98 HOH HOH A . D 3 HOH 98 260 99 HOH HOH A . D 3 HOH 99 261 100 HOH HOH A . D 3 HOH 100 262 101 HOH HOH A . D 3 HOH 101 263 102 HOH HOH A . D 3 HOH 102 264 103 HOH HOH A . D 3 HOH 103 265 104 HOH HOH A . D 3 HOH 104 266 105 HOH HOH A . D 3 HOH 105 267 106 HOH HOH A . D 3 HOH 106 268 107 HOH HOH A . D 3 HOH 107 269 108 HOH HOH A . D 3 HOH 108 270 109 HOH HOH A . D 3 HOH 109 271 110 HOH HOH A . D 3 HOH 110 272 111 HOH HOH A . D 3 HOH 111 273 112 HOH HOH A . D 3 HOH 112 274 113 HOH HOH A . D 3 HOH 113 275 114 HOH HOH A . D 3 HOH 114 276 115 HOH HOH A . D 3 HOH 115 277 116 HOH HOH A . D 3 HOH 116 278 117 HOH HOH A . D 3 HOH 117 279 118 HOH HOH A . D 3 HOH 118 280 119 HOH HOH A . D 3 HOH 119 281 120 HOH HOH A . D 3 HOH 120 282 121 HOH HOH A . D 3 HOH 121 283 122 HOH HOH A . D 3 HOH 122 284 123 HOH HOH A . D 3 HOH 123 285 124 HOH HOH A . D 3 HOH 124 286 125 HOH HOH A . D 3 HOH 125 287 126 HOH HOH A . D 3 HOH 126 288 127 HOH HOH A . D 3 HOH 127 289 128 HOH HOH A . D 3 HOH 128 290 129 HOH HOH A . D 3 HOH 129 291 130 HOH HOH A . D 3 HOH 130 292 131 HOH HOH A . D 3 HOH 131 293 132 HOH HOH A . D 3 HOH 132 294 133 HOH HOH A . D 3 HOH 133 295 134 HOH HOH A . D 3 HOH 134 296 135 HOH HOH A . D 3 HOH 135 297 136 HOH HOH A . D 3 HOH 136 298 137 HOH HOH A . D 3 HOH 137 299 138 HOH HOH A . D 3 HOH 138 300 139 HOH HOH A . D 3 HOH 139 301 140 HOH HOH A . D 3 HOH 140 302 141 HOH HOH A . D 3 HOH 141 303 142 HOH HOH A . D 3 HOH 142 304 143 HOH HOH A . D 3 HOH 143 305 144 HOH HOH A . D 3 HOH 144 306 145 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3750 ? 1 MORE -62 ? 1 'SSA (A^2)' 13980 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 119.5785000000 -0.8660254038 0.5000000000 0.0000000000 69.0386791643 0.0000000000 0.0000000000 -1.0000000000 14.8793333333 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 283 ? D HOH . 2 1 A HOH 295 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_special_symmetry 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_struct_ref_seq_dif.details' 13 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 14 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 15 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 43.8056 _pdbx_refine_tls.origin_y 40.6277 _pdbx_refine_tls.origin_z 1.4110 _pdbx_refine_tls.T[1][1] 0.0448 _pdbx_refine_tls.T[2][2] 0.0204 _pdbx_refine_tls.T[3][3] 0.0299 _pdbx_refine_tls.T[1][2] 0.0270 _pdbx_refine_tls.T[1][3] -0.0122 _pdbx_refine_tls.T[2][3] -0.0036 _pdbx_refine_tls.L[1][1] 0.7030 _pdbx_refine_tls.L[2][2] 0.4908 _pdbx_refine_tls.L[3][3] 0.9916 _pdbx_refine_tls.L[1][2] 0.1044 _pdbx_refine_tls.L[1][3] 0.1739 _pdbx_refine_tls.L[2][3] 0.1403 _pdbx_refine_tls.S[1][1] 0.0359 _pdbx_refine_tls.S[2][2] -0.0326 _pdbx_refine_tls.S[3][3] -0.0034 _pdbx_refine_tls.S[1][2] -0.0011 _pdbx_refine_tls.S[1][3] 0.0019 _pdbx_refine_tls.S[2][3] 0.0274 _pdbx_refine_tls.S[2][1] -0.0623 _pdbx_refine_tls.S[3][1] 0.0182 _pdbx_refine_tls.S[3][2] -0.0397 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -10 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 9999 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.100 'Jan. 22, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 6 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 7 MOLREP . ? ? ? ? phasing ? ? ? 8 HKL-3000 . ? ? ? ? phasing ? ? ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 107 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OE1 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 107 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.175 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation -0.077 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 76 ? ? 176.74 79.86 2 1 THR A 88 ? ? -92.80 -74.42 3 1 ARG A 109 ? ? -147.04 -31.26 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A LYS 161 ? A LYS 164 4 1 Y 1 A GLU 162 ? A GLU 165 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 SO4 S S N N 304 SO4 O1 O N N 305 SO4 O2 O N N 306 SO4 O3 O N N 307 SO4 O4 O N N 308 THR N N N N 309 THR CA C N S 310 THR C C N N 311 THR O O N N 312 THR CB C N R 313 THR OG1 O N N 314 THR CG2 C N N 315 THR OXT O N N 316 THR H H N N 317 THR H2 H N N 318 THR HA H N N 319 THR HB H N N 320 THR HG1 H N N 321 THR HG21 H N N 322 THR HG22 H N N 323 THR HG23 H N N 324 THR HXT H N N 325 TRP N N N N 326 TRP CA C N S 327 TRP C C N N 328 TRP O O N N 329 TRP CB C N N 330 TRP CG C Y N 331 TRP CD1 C Y N 332 TRP CD2 C Y N 333 TRP NE1 N Y N 334 TRP CE2 C Y N 335 TRP CE3 C Y N 336 TRP CZ2 C Y N 337 TRP CZ3 C Y N 338 TRP CH2 C Y N 339 TRP OXT O N N 340 TRP H H N N 341 TRP H2 H N N 342 TRP HA H N N 343 TRP HB2 H N N 344 TRP HB3 H N N 345 TRP HD1 H N N 346 TRP HE1 H N N 347 TRP HE3 H N N 348 TRP HZ2 H N N 349 TRP HZ3 H N N 350 TRP HH2 H N N 351 TRP HXT H N N 352 TYR N N N N 353 TYR CA C N S 354 TYR C C N N 355 TYR O O N N 356 TYR CB C N N 357 TYR CG C Y N 358 TYR CD1 C Y N 359 TYR CD2 C Y N 360 TYR CE1 C Y N 361 TYR CE2 C Y N 362 TYR CZ C Y N 363 TYR OH O N N 364 TYR OXT O N N 365 TYR H H N N 366 TYR H2 H N N 367 TYR HA H N N 368 TYR HB2 H N N 369 TYR HB3 H N N 370 TYR HD1 H N N 371 TYR HD2 H N N 372 TYR HE1 H N N 373 TYR HE2 H N N 374 TYR HH H N N 375 TYR HXT H N N 376 VAL N N N N 377 VAL CA C N S 378 VAL C C N N 379 VAL O O N N 380 VAL CB C N N 381 VAL CG1 C N N 382 VAL CG2 C N N 383 VAL OXT O N N 384 VAL H H N N 385 VAL H2 H N N 386 VAL HA H N N 387 VAL HB H N N 388 VAL HG11 H N N 389 VAL HG12 H N N 390 VAL HG13 H N N 391 VAL HG21 H N N 392 VAL HG22 H N N 393 VAL HG23 H N N 394 VAL HXT H N N 395 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 SO4 S O1 doub N N 290 SO4 S O2 doub N N 291 SO4 S O3 sing N N 292 SO4 S O4 sing N N 293 THR N CA sing N N 294 THR N H sing N N 295 THR N H2 sing N N 296 THR CA C sing N N 297 THR CA CB sing N N 298 THR CA HA sing N N 299 THR C O doub N N 300 THR C OXT sing N N 301 THR CB OG1 sing N N 302 THR CB CG2 sing N N 303 THR CB HB sing N N 304 THR OG1 HG1 sing N N 305 THR CG2 HG21 sing N N 306 THR CG2 HG22 sing N N 307 THR CG2 HG23 sing N N 308 THR OXT HXT sing N N 309 TRP N CA sing N N 310 TRP N H sing N N 311 TRP N H2 sing N N 312 TRP CA C sing N N 313 TRP CA CB sing N N 314 TRP CA HA sing N N 315 TRP C O doub N N 316 TRP C OXT sing N N 317 TRP CB CG sing N N 318 TRP CB HB2 sing N N 319 TRP CB HB3 sing N N 320 TRP CG CD1 doub Y N 321 TRP CG CD2 sing Y N 322 TRP CD1 NE1 sing Y N 323 TRP CD1 HD1 sing N N 324 TRP CD2 CE2 doub Y N 325 TRP CD2 CE3 sing Y N 326 TRP NE1 CE2 sing Y N 327 TRP NE1 HE1 sing N N 328 TRP CE2 CZ2 sing Y N 329 TRP CE3 CZ3 doub Y N 330 TRP CE3 HE3 sing N N 331 TRP CZ2 CH2 doub Y N 332 TRP CZ2 HZ2 sing N N 333 TRP CZ3 CH2 sing Y N 334 TRP CZ3 HZ3 sing N N 335 TRP CH2 HH2 sing N N 336 TRP OXT HXT sing N N 337 TYR N CA sing N N 338 TYR N H sing N N 339 TYR N H2 sing N N 340 TYR CA C sing N N 341 TYR CA CB sing N N 342 TYR CA HA sing N N 343 TYR C O doub N N 344 TYR C OXT sing N N 345 TYR CB CG sing N N 346 TYR CB HB2 sing N N 347 TYR CB HB3 sing N N 348 TYR CG CD1 doub Y N 349 TYR CG CD2 sing Y N 350 TYR CD1 CE1 sing Y N 351 TYR CD1 HD1 sing N N 352 TYR CD2 CE2 doub Y N 353 TYR CD2 HD2 sing N N 354 TYR CE1 CZ doub Y N 355 TYR CE1 HE1 sing N N 356 TYR CE2 CZ sing Y N 357 TYR CE2 HE2 sing N N 358 TYR CZ OH sing N N 359 TYR OH HH sing N N 360 TYR OXT HXT sing N N 361 VAL N CA sing N N 362 VAL N H sing N N 363 VAL N H2 sing N N 364 VAL CA C sing N N 365 VAL CA CB sing N N 366 VAL CA HA sing N N 367 VAL C O doub N N 368 VAL C OXT sing N N 369 VAL CB CG1 sing N N 370 VAL CB CG2 sing N N 371 VAL CB HB sing N N 372 VAL CG1 HG11 sing N N 373 VAL CG1 HG12 sing N N 374 VAL CG1 HG13 sing N N 375 VAL CG2 HG21 sing N N 376 VAL CG2 HG22 sing N N 377 VAL CG2 HG23 sing N N 378 VAL OXT HXT sing N N 379 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1MXI _pdbx_initial_refinement_model.details ? #