data_3N4O
# 
_entry.id   3N4O 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.380 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   3N4O         pdb_00003n4o 10.2210/pdb3n4o/pdb 
NDB   NA0581       ?            ?                   
RCSB  RCSB059375   ?            ?                   
WWPDB D_1000059375 ?            ?                   
# 
loop_
_pdbx_database_related.db_name 
_pdbx_database_related.db_id 
_pdbx_database_related.details 
_pdbx_database_related.content_type 
PDB 3GJJ . unspecified 
PDB 3N4N . unspecified 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        3N4O 
_pdbx_database_status.recvd_initial_deposition_date   2010-05-22 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    PDBJ 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Takenaka, A.' 1 
'Juan, E.C.M.' 2 
'Shimizu, S.'  3 
# 
_citation.id                        primary 
_citation.title                     
;Insights into the DNA stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido [2,3-d]pyrimidin-2-one.
;
_citation.journal_abbrev            'Nucleic Acids Res.' 
_citation.journal_volume            ? 
_citation.page_first                ? 
_citation.page_last                 ? 
_citation.year                      2010 
_citation.journal_id_ASTM           NARHAD 
_citation.country                   UK 
_citation.journal_id_ISSN           1362-4962 
_citation.journal_id_CSD            0389 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   20554855 
_citation.pdbx_database_id_DOI      10.1093/nar/gkq519 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Juan, E.C.M.'     1  ? 
primary 'Shimizu, S.'      2  ? 
primary 'Ma, X.'           3  ? 
primary 'Kurose, T.'       4  ? 
primary 'Haraguchi, T.'    5  ? 
primary 'Zhang, F.'        6  ? 
primary 'Tsunoda, M.'      7  ? 
primary 'Ohkubo, A.'       8  ? 
primary 'Sekine, M.'       9  ? 
primary 'Shibata, T.'      10 ? 
primary 'Millington, C.L.' 11 ? 
primary 'Williams, D.M.'   12 ? 
primary 'Takenaka, A.'     13 ? 
# 
_cell.entry_id           3N4O 
_cell.length_a           25.030 
_cell.length_b           41.659 
_cell.length_c           64.569 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         3N4O 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
_symmetry.space_group_name_Hall            ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn "5'-D(*CP*GP*CP*GP*AP*AP*TP*(B7C)P*CP*GP*CP*G)-3'"                      3686.429 2  ? ? ? ? 
2 non-polymer syn "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" 424.498  1  ? ? ? ? 
3 water       nat water                                                                   18.015   30 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(B7C)(DC)(DG)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGAATXCGCG 
_entity_poly.pdbx_strand_id                 D,E 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC  n 
1 2  DG  n 
1 3  DC  n 
1 4  DG  n 
1 5  DA  n 
1 6  DA  n 
1 7  DT  n 
1 8  B7C n 
1 9  DC  n 
1 10 DG  n 
1 11 DC  n 
1 12 DG  n 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    3N4O 
_struct_ref.pdbx_db_accession          3N4O 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 3N4O D 1 ? 12 ? 3N4O 1  ? 12 ? 1  12 
2 1 3N4O E 1 ? 12 ? 3N4O 13 ? 24 ? 13 24 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
B7C 'DNA linking' n '3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7,8-dihydropyrido[2,3-d]pyrimidin-2(3H)-one' ? 
'C12 H16 N3 O7 P' 345.245 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE"                                                                  ? 
'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"                                                                   ? 
'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"                                                                  ? 
'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"                                                                          ? 
'C10 H15 N2 O8 P' 322.208 
HOH non-polymer   . WATER                                                                                                 ? 'H2 O' 
18.015  
HT  non-polymer   . "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE"                               
'HOECHST 33258' 'C25 H24 N6 O'    424.498 
# 
_exptl.entry_id          3N4O 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.28 
_exptl_crystal.density_percent_sol   46.12 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            277 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6 
_exptl_crystal_grow.pdbx_details    
;0.60mM ssDNA, 20mM Sodium cacodylate (pH6.0), 6mM Spermine tetrahydrochloride, 40mM Potassium chloride, 6mM Sodium chloride, 0.2% CHAPS, 0.30mM Hoechst33258, 5% MPD 
, VAPOR DIFFUSION, HANGING DROP, temperature 277K
;
_exptl_crystal_grow.pdbx_pH_range   . 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   'ADSC QUANTUM 4' 
_diffrn_detector.pdbx_collection_date   2008-01-26 
_diffrn_detector.details                mirrors 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   0.978 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'PHOTON FACTORY BEAMLINE BL-6A' 
_diffrn_source.pdbx_synchrotron_site       'Photon Factory' 
_diffrn_source.pdbx_synchrotron_beamline   BL-6A 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        0.978 
# 
_reflns.entry_id                     3N4O 
_reflns.observed_criterion_sigma_I   0 
_reflns.observed_criterion_sigma_F   0 
_reflns.d_resolution_low             50 
_reflns.d_resolution_high            2.9 
_reflns.number_obs                   1714 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         99.8 
_reflns.pdbx_Rmerge_I_obs            0.035 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        69.6 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              13.1 
_reflns.R_free_details               ? 
_reflns.limit_h_max                  ? 
_reflns.limit_h_min                  ? 
_reflns.limit_k_max                  ? 
_reflns.limit_k_min                  ? 
_reflns.limit_l_max                  ? 
_reflns.limit_l_min                  ? 
_reflns.observed_criterion_F_max     ? 
_reflns.observed_criterion_F_min     ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_reflns_shell.d_res_high             2.90 
_reflns_shell.d_res_low              3.00 
_reflns_shell.percent_possible_all   100 
_reflns_shell.Rmerge_I_obs           0.298 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    10.8 
_reflns_shell.pdbx_redundancy        13.5 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      169 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_diffrn_id         ? 
_reflns_shell.pdbx_ordinal           1 
# 
_refine.entry_id                                 3N4O 
_refine.ls_number_reflns_obs                     1635 
_refine.ls_number_reflns_all                     1693 
_refine.pdbx_ls_sigma_I                          0 
_refine.pdbx_ls_sigma_F                          0.0 
_refine.pdbx_data_cutoff_high_absF               1235175.42 
_refine.pdbx_data_cutoff_low_absF                0.000000 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             9.89 
_refine.ls_d_res_high                            2.90 
_refine.ls_percent_reflns_obs                    99.9 
_refine.ls_R_factor_obs                          0.254 
_refine.ls_R_factor_all                          0.259 
_refine.ls_R_factor_R_work                       0.232 
_refine.ls_R_factor_R_free                       0.297 
_refine.ls_R_factor_R_free_error                 0.023 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 9.8 
_refine.ls_number_reflns_R_free                  161 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.B_iso_mean                               44.4 
_refine.aniso_B[1][1]                            0.00 
_refine.aniso_B[2][2]                            0.00 
_refine.aniso_B[3][3]                            0.00 
_refine.aniso_B[1][2]                            0.00 
_refine.aniso_B[1][3]                            0.00 
_refine.aniso_B[2][3]                            0.00 
_refine.solvent_model_details                    'FLAT MODEL' 
_refine.solvent_model_param_ksol                 0.35 
_refine.solvent_model_param_bsol                 63.8396 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  'Used weighted full matrix least squares procedure' 
_refine.pdbx_starting_model                      1DNH 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             Isotropic 
_refine.pdbx_stereochemistry_target_values       'Engh & Huber' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.B_iso_min                                ? 
_refine.B_iso_max                                ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_analyze.entry_id                        3N4O 
_refine_analyze.Luzzati_coordinate_error_obs    0.39 
_refine_analyze.Luzzati_sigma_a_obs             0.47 
_refine_analyze.Luzzati_d_res_low_obs           5.00 
_refine_analyze.Luzzati_coordinate_error_free   0.47 
_refine_analyze.Luzzati_sigma_a_free            0.67 
_refine_analyze.Luzzati_d_res_low_free          ? 
_refine_analyze.number_disordered_residues      ? 
_refine_analyze.occupancy_sum_hydrogen          ? 
_refine_analyze.occupancy_sum_non_hydrogen      ? 
_refine_analyze.pdbx_Luzzati_d_res_high_obs     ? 
_refine_analyze.pdbx_refine_id                  'X-RAY DIFFRACTION' 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   490 
_refine_hist.pdbx_number_atoms_ligand         32 
_refine_hist.number_atoms_solvent             30 
_refine_hist.number_atoms_total               552 
_refine_hist.d_res_high                       2.90 
_refine_hist.d_res_low                        9.89 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
c_bond_d           0.009 ? ? ? 'X-RAY DIFFRACTION' ? 
c_angle_deg        1.1   ? ? ? 'X-RAY DIFFRACTION' ? 
c_dihedral_angle_d 28.6  ? ? ? 'X-RAY DIFFRACTION' ? 
c_improper_angle_d 1.52  ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_total_number_of_bins_used   6 
_refine_ls_shell.d_res_high                       2.90 
_refine_ls_shell.d_res_low                        3.08 
_refine_ls_shell.number_reflns_R_work             246 
_refine_ls_shell.R_factor_R_work                  0.406 
_refine_ls_shell.percent_reflns_obs               100.0 
_refine_ls_shell.R_factor_R_free                  0.673 
_refine_ls_shell.R_factor_R_free_error            0.132 
_refine_ls_shell.percent_reflns_R_free            9.6 
_refine_ls_shell.number_reflns_R_free             26 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
_refine_ls_shell.number_reflns_obs                246 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
# 
loop_
_pdbx_xplor_file.pdbx_refine_id 
_pdbx_xplor_file.serial_no 
_pdbx_xplor_file.param_file 
_pdbx_xplor_file.topol_file 
'X-RAY DIFFRACTION' 1 water.param          water.top      
'X-RAY DIFFRACTION' 2 dna-rna_repBIC.param dna-rnaBIC.top 
'X-RAY DIFFRACTION' 3 ht_xplor_param       ht_xplor_top   
# 
_struct_ncs_dom.id            1 
_struct_ncs_dom.details       ? 
_struct_ncs_dom.pdbx_ens_id   1 
# 
_struct_ncs_ens.id        1 
_struct_ncs_ens.details   ? 
# 
_struct.entry_id                  3N4O 
_struct.title                     
;Insights into the stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido[2,3-d]pyrimidin-2-one
;
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        3N4O 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'bicyclic cytosine, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 3 ? 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A DT  7  "O3'" ? ? ? 1_555 A B7C 8  P  A ? D DT  7  D B7C 8  1_555 ? ? ? ? ? ? ?            1.607 ? ? 
covale2  covale both ? A DT  7  "O3'" ? ? ? 1_555 A B7C 8  P  B ? D DT  7  D B7C 8  1_555 ? ? ? ? ? ? ?            1.608 ? ? 
covale3  covale both ? A B7C 8  "O3'" A ? ? 1_555 A DC  9  P  ? ? D B7C 8  D DC  9  1_555 ? ? ? ? ? ? ?            1.610 ? ? 
covale4  covale both ? A B7C 8  "O3'" B ? ? 1_555 A DC  9  P  ? ? D B7C 8  D DC  9  1_555 ? ? ? ? ? ? ?            1.607 ? ? 
covale5  covale both ? B DT  7  "O3'" ? ? ? 1_555 B B7C 8  P  A ? E DT  19 E B7C 20 1_555 ? ? ? ? ? ? ?            1.610 ? ? 
covale6  covale both ? B DT  7  "O3'" ? ? ? 1_555 B B7C 8  P  B ? E DT  19 E B7C 20 1_555 ? ? ? ? ? ? ?            1.609 ? ? 
covale7  covale both ? B B7C 8  "O3'" A ? ? 1_555 B DC  9  P  ? ? E B7C 20 E DC  21 1_555 ? ? ? ? ? ? ?            1.599 ? ? 
covale8  covale both ? B B7C 8  "O3'" B ? ? 1_555 B DC  9  P  ? ? E B7C 20 E DC  21 1_555 ? ? ? ? ? ? ?            1.602 ? ? 
hydrog1  hydrog ?    ? A DC  1  N3    ? ? ? 1_555 B DG  12 N1 ? ? D DC  1  E DG  24 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A DC  1  N4    ? ? ? 1_555 B DG  12 O6 ? ? D DC  1  E DG  24 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A DC  1  O2    ? ? ? 1_555 B DG  12 N2 ? ? D DC  1  E DG  24 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A DG  2  N1    ? ? ? 1_555 B DC  11 N3 ? ? D DG  2  E DC  23 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A DG  2  N2    ? ? ? 1_555 B DC  11 O2 ? ? D DG  2  E DC  23 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A DG  2  O6    ? ? ? 1_555 B DC  11 N4 ? ? D DG  2  E DC  23 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A DC  3  N3    ? ? ? 1_555 B DG  10 N1 ? ? D DC  3  E DG  22 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A DC  3  N4    ? ? ? 1_555 B DG  10 O6 ? ? D DC  3  E DG  22 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A DC  3  O2    ? ? ? 1_555 B DG  10 N2 ? ? D DC  3  E DG  22 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A DG  4  N1    ? ? ? 1_555 B DC  9  N3 ? ? D DG  4  E DC  21 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?    ? A DG  4  N2    ? ? ? 1_555 B DC  9  O2 ? ? D DG  4  E DC  21 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?    ? A DG  4  O6    ? ? ? 1_555 B DC  9  N4 ? ? D DG  4  E DC  21 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?    ? A DA  6  N1    ? ? ? 1_555 B DT  7  N3 ? ? D DA  6  E DT  19 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?    ? A DA  6  N6    ? ? ? 1_555 B DT  7  O4 ? ? D DA  6  E DT  19 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?    ? A DT  7  N3    ? ? ? 1_555 B DA  6  N1 ? ? D DT  7  E DA  18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?    ? A DT  7  O4    ? ? ? 1_555 B DA  6  N6 ? ? D DT  7  E DA  18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?    ? A DC  9  N3    ? ? ? 1_555 B DG  4  N1 ? ? D DC  9  E DG  16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?    ? A DC  9  N4    ? ? ? 1_555 B DG  4  O6 ? ? D DC  9  E DG  16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ?    ? A DC  9  O2    ? ? ? 1_555 B DG  4  N2 ? ? D DC  9  E DG  16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ?    ? A DG  10 N1    ? ? ? 1_555 B DC  3  N3 ? ? D DG  10 E DC  15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ?    ? A DG  10 N2    ? ? ? 1_555 B DC  3  O2 ? ? D DG  10 E DC  15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ?    ? A DG  10 O6    ? ? ? 1_555 B DC  3  N4 ? ? D DG  10 E DC  15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ?    ? A DC  11 N3    ? ? ? 1_555 B DG  2  N1 ? ? D DC  11 E DG  14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ?    ? A DC  11 N4    ? ? ? 1_555 B DG  2  O6 ? ? D DC  11 E DG  14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog25 hydrog ?    ? A DC  11 O2    ? ? ? 1_555 B DG  2  N2 ? ? D DC  11 E DG  14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog26 hydrog ?    ? A DG  12 N1    ? ? ? 1_555 B DC  1  N3 ? ? D DG  12 E DC  13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog27 hydrog ?    ? A DG  12 N2    ? ? ? 1_555 B DC  1  O2 ? ? D DG  12 E DC  13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog28 hydrog ?    ? A DG  12 O6    ? ? ? 1_555 B DC  1  N4 ? ? D DG  12 E DC  13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software E HT 25 ? 10 'BINDING SITE FOR RESIDUE HT E 25' 
1   ?        ? ?  ?  ? ?  ?                                  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 10 DA  A 5 ? DA  D 5  . ? 1_555 ? 
2  AC1 10 DA  A 6 ? DA  D 6  . ? 1_555 ? 
3  AC1 10 DT  A 7 ? DT  D 7  . ? 1_555 ? 
4  AC1 10 B7C A 8 ? B7C D 8  . ? 1_555 ? 
5  AC1 10 DC  A 9 ? DC  D 9  . ? 1_555 ? 
6  AC1 10 DA  B 5 ? DA  E 17 . ? 1_555 ? 
7  AC1 10 DA  B 6 ? DA  E 18 . ? 1_555 ? 
8  AC1 10 DT  B 7 ? DT  E 19 . ? 1_555 ? 
9  AC1 10 B7C B 8 ? B7C E 20 . ? 1_555 ? 
10 AC1 10 DC  B 9 ? DC  E 21 . ? 1_555 ? 
# 
_database_PDB_matrix.entry_id          3N4O 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    3N4O 
_atom_sites.fract_transf_matrix[1][1]   0.039952 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.024004 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.015487 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC  1  1  1  DC  CYT D . n 
A 1 2  DG  2  2  2  DG  GUA D . n 
A 1 3  DC  3  3  3  DC  CYT D . n 
A 1 4  DG  4  4  4  DG  GUA D . n 
A 1 5  DA  5  5  5  DA  ADX D . n 
A 1 6  DA  6  6  6  DA  ADE D . n 
A 1 7  DT  7  7  7  DT  THY D . n 
A 1 8  B7C 8  8  8  B7C BIC D . n 
A 1 9  DC  9  9  9  DC  CYT D . n 
A 1 10 DG  10 10 10 DG  GUA D . n 
A 1 11 DC  11 11 11 DC  CYT D . n 
A 1 12 DG  12 12 12 DG  GUA D . n 
B 1 1  DC  1  13 13 DC  CYT E . n 
B 1 2  DG  2  14 14 DG  GUA E . n 
B 1 3  DC  3  15 15 DC  CYT E . n 
B 1 4  DG  4  16 16 DG  GUA E . n 
B 1 5  DA  5  17 17 DA  ADX E . n 
B 1 6  DA  6  18 18 DA  ADE E . n 
B 1 7  DT  7  19 19 DT  THY E . n 
B 1 8  B7C 8  20 20 B7C BIC E . n 
B 1 9  DC  9  21 21 DC  CYT E . n 
B 1 10 DG  10 22 22 DG  GUA E . n 
B 1 11 DC  11 23 23 DC  CYT E . n 
B 1 12 DG  12 24 24 DG  GUA E . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 HT  1  25 25 HT  HT  E . 
D 3 HOH 1  13 1  HOH TIP D . 
D 3 HOH 2  14 4  HOH TIP D . 
D 3 HOH 3  15 6  HOH TIP D . 
D 3 HOH 4  16 7  HOH TIP D . 
D 3 HOH 5  17 17 HOH TIP D . 
D 3 HOH 6  18 8  HOH TIP D . 
D 3 HOH 7  19 19 HOH TIP D . 
D 3 HOH 8  20 10 HOH TIP D . 
D 3 HOH 9  21 21 HOH TIP D . 
D 3 HOH 10 22 11 HOH TIP D . 
D 3 HOH 11 23 2  HOH TIP D . 
D 3 HOH 12 24 24 HOH TIP D . 
D 3 HOH 13 27 27 HOH TIP D . 
D 3 HOH 14 28 28 HOH TIP D . 
D 3 HOH 15 30 30 HOH TIP D . 
E 3 HOH 1  3  3  HOH TIP E . 
E 3 HOH 2  5  5  HOH TIP E . 
E 3 HOH 3  9  9  HOH TIP E . 
E 3 HOH 4  12 12 HOH TIP E . 
E 3 HOH 5  26 26 HOH TIP E . 
E 3 HOH 6  27 13 HOH TIP E . 
E 3 HOH 7  28 14 HOH TIP E . 
E 3 HOH 8  29 29 HOH TIP E . 
E 3 HOH 9  30 15 HOH TIP E . 
E 3 HOH 10 31 16 HOH TIP E . 
E 3 HOH 11 32 18 HOH TIP E . 
E 3 HOH 12 33 20 HOH TIP E . 
E 3 HOH 13 34 22 HOH TIP E . 
E 3 HOH 14 35 25 HOH TIP E . 
E 3 HOH 15 36 23 HOH TIP E . 
# 
loop_
_pdbx_struct_mod_residue.id 
_pdbx_struct_mod_residue.label_asym_id 
_pdbx_struct_mod_residue.label_comp_id 
_pdbx_struct_mod_residue.label_seq_id 
_pdbx_struct_mod_residue.auth_asym_id 
_pdbx_struct_mod_residue.auth_comp_id 
_pdbx_struct_mod_residue.auth_seq_id 
_pdbx_struct_mod_residue.PDB_ins_code 
_pdbx_struct_mod_residue.parent_comp_id 
_pdbx_struct_mod_residue.details 
1 A B7C 8 D B7C 8  ? DC ? 
2 B B7C 8 E B7C 20 ? DC ? 
# 
_struct_site_keywords.site_id   1 
_struct_site_keywords.text      'MAJOR GROOVE BINDER' 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_and_software_defined_assembly 
_pdbx_struct_assembly.method_details       PISA 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 1130 ? 
1 MORE         -2   ? 
1 'SSA (A^2)'  4510 ? 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2010-08-11 
2 'Structure model' 1 1 2011-07-13 
3 'Structure model' 1 2 2023-11-01 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Data collection'           
3 3 'Structure model' 'Database references'       
4 3 'Structure model' 'Derived calculations'      
5 3 'Structure model' 'Refinement description'    
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 3 'Structure model' chem_comp_atom                
2 3 'Structure model' chem_comp_bond                
3 3 'Structure model' database_2                    
4 3 'Structure model' pdbx_initial_refinement_model 
5 3 'Structure model' struct_conn                   
6 3 'Structure model' struct_ref_seq                
7 3 'Structure model' struct_site                   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 3 'Structure model' '_database_2.pdbx_DOI'                
2 3 'Structure model' '_database_2.pdbx_database_accession' 
3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 
4 3 'Structure model' '_struct_ref_seq.db_align_beg'        
5 3 'Structure model' '_struct_ref_seq.db_align_end'        
6 3 'Structure model' '_struct_site.pdbx_auth_asym_id'      
7 3 'Structure model' '_struct_site.pdbx_auth_comp_id'      
8 3 'Structure model' '_struct_site.pdbx_auth_seq_id'       
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
CNS      refinement        1.2 ? 1 
HKL-2000 'data collection' .   ? 2 
HKL-2000 'data reduction'  .   ? 3 
HKL-2000 'data scaling'    .   ? 4 
AMoRE    phasing           .   ? 5 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
B7C OP3    O N N 1   
B7C P      P N N 2   
B7C OP1    O N N 3   
B7C OP2    O N N 4   
B7C "O5'"  O N N 5   
B7C N1     N N N 6   
B7C C6     C N N 7   
B7C C2     C N N 8   
B7C O2     O N N 9   
B7C N3     N N N 10  
B7C C4     C N N 11  
B7C N4     N N N 12  
B7C C5     C N N 13  
B7C C7     C N N 14  
B7C C8     C N N 15  
B7C C9     C N N 16  
B7C "C2'"  C N N 17  
B7C "C5'"  C N N 18  
B7C "C4'"  C N R 19  
B7C "O4'"  O N N 20  
B7C "C1'"  C N R 21  
B7C "C3'"  C N S 22  
B7C "O3'"  O N N 23  
B7C HOP3   H N N 24  
B7C HOP1   H N N 25  
B7C H6     H N N 26  
B7C HN4    H N N 27  
B7C H7     H N N 28  
B7C H8     H N N 29  
B7C H9     H N N 30  
B7C H9A    H N N 31  
B7C "H2'"  H N N 32  
B7C "H2'A" H N N 33  
B7C "H5'"  H N N 34  
B7C "H5'A" H N N 35  
B7C "H4'"  H N N 36  
B7C "H1'"  H N N 37  
B7C "H3'"  H N N 38  
B7C "HO3'" H N N 39  
DA  OP3    O N N 40  
DA  P      P N N 41  
DA  OP1    O N N 42  
DA  OP2    O N N 43  
DA  "O5'"  O N N 44  
DA  "C5'"  C N N 45  
DA  "C4'"  C N R 46  
DA  "O4'"  O N N 47  
DA  "C3'"  C N S 48  
DA  "O3'"  O N N 49  
DA  "C2'"  C N N 50  
DA  "C1'"  C N R 51  
DA  N9     N Y N 52  
DA  C8     C Y N 53  
DA  N7     N Y N 54  
DA  C5     C Y N 55  
DA  C6     C Y N 56  
DA  N6     N N N 57  
DA  N1     N Y N 58  
DA  C2     C Y N 59  
DA  N3     N Y N 60  
DA  C4     C Y N 61  
DA  HOP3   H N N 62  
DA  HOP2   H N N 63  
DA  "H5'"  H N N 64  
DA  "H5''" H N N 65  
DA  "H4'"  H N N 66  
DA  "H3'"  H N N 67  
DA  "HO3'" H N N 68  
DA  "H2'"  H N N 69  
DA  "H2''" H N N 70  
DA  "H1'"  H N N 71  
DA  H8     H N N 72  
DA  H61    H N N 73  
DA  H62    H N N 74  
DA  H2     H N N 75  
DC  OP3    O N N 76  
DC  P      P N N 77  
DC  OP1    O N N 78  
DC  OP2    O N N 79  
DC  "O5'"  O N N 80  
DC  "C5'"  C N N 81  
DC  "C4'"  C N R 82  
DC  "O4'"  O N N 83  
DC  "C3'"  C N S 84  
DC  "O3'"  O N N 85  
DC  "C2'"  C N N 86  
DC  "C1'"  C N R 87  
DC  N1     N N N 88  
DC  C2     C N N 89  
DC  O2     O N N 90  
DC  N3     N N N 91  
DC  C4     C N N 92  
DC  N4     N N N 93  
DC  C5     C N N 94  
DC  C6     C N N 95  
DC  HOP3   H N N 96  
DC  HOP2   H N N 97  
DC  "H5'"  H N N 98  
DC  "H5''" H N N 99  
DC  "H4'"  H N N 100 
DC  "H3'"  H N N 101 
DC  "HO3'" H N N 102 
DC  "H2'"  H N N 103 
DC  "H2''" H N N 104 
DC  "H1'"  H N N 105 
DC  H41    H N N 106 
DC  H42    H N N 107 
DC  H5     H N N 108 
DC  H6     H N N 109 
DG  OP3    O N N 110 
DG  P      P N N 111 
DG  OP1    O N N 112 
DG  OP2    O N N 113 
DG  "O5'"  O N N 114 
DG  "C5'"  C N N 115 
DG  "C4'"  C N R 116 
DG  "O4'"  O N N 117 
DG  "C3'"  C N S 118 
DG  "O3'"  O N N 119 
DG  "C2'"  C N N 120 
DG  "C1'"  C N R 121 
DG  N9     N Y N 122 
DG  C8     C Y N 123 
DG  N7     N Y N 124 
DG  C5     C Y N 125 
DG  C6     C N N 126 
DG  O6     O N N 127 
DG  N1     N N N 128 
DG  C2     C N N 129 
DG  N2     N N N 130 
DG  N3     N N N 131 
DG  C4     C Y N 132 
DG  HOP3   H N N 133 
DG  HOP2   H N N 134 
DG  "H5'"  H N N 135 
DG  "H5''" H N N 136 
DG  "H4'"  H N N 137 
DG  "H3'"  H N N 138 
DG  "HO3'" H N N 139 
DG  "H2'"  H N N 140 
DG  "H2''" H N N 141 
DG  "H1'"  H N N 142 
DG  H8     H N N 143 
DG  H1     H N N 144 
DG  H21    H N N 145 
DG  H22    H N N 146 
DT  OP3    O N N 147 
DT  P      P N N 148 
DT  OP1    O N N 149 
DT  OP2    O N N 150 
DT  "O5'"  O N N 151 
DT  "C5'"  C N N 152 
DT  "C4'"  C N R 153 
DT  "O4'"  O N N 154 
DT  "C3'"  C N S 155 
DT  "O3'"  O N N 156 
DT  "C2'"  C N N 157 
DT  "C1'"  C N R 158 
DT  N1     N N N 159 
DT  C2     C N N 160 
DT  O2     O N N 161 
DT  N3     N N N 162 
DT  C4     C N N 163 
DT  O4     O N N 164 
DT  C5     C N N 165 
DT  C7     C N N 166 
DT  C6     C N N 167 
DT  HOP3   H N N 168 
DT  HOP2   H N N 169 
DT  "H5'"  H N N 170 
DT  "H5''" H N N 171 
DT  "H4'"  H N N 172 
DT  "H3'"  H N N 173 
DT  "HO3'" H N N 174 
DT  "H2'"  H N N 175 
DT  "H2''" H N N 176 
DT  "H1'"  H N N 177 
DT  H3     H N N 178 
DT  H71    H N N 179 
DT  H72    H N N 180 
DT  H73    H N N 181 
DT  H6     H N N 182 
HOH O      O N N 183 
HOH H1     H N N 184 
HOH H2     H N N 185 
HT  O1     O N N 186 
HT  C1     C Y N 187 
HT  C4     C Y N 188 
HT  C2     C Y N 189 
HT  C3     C Y N 190 
HT  C6     C Y N 191 
HT  C5     C Y N 192 
HT  C7     C Y N 193 
HT  N1     N Y N 194 
HT  C8     C Y N 195 
HT  C9     C Y N 196 
HT  N2     N Y N 197 
HT  C10    C Y N 198 
HT  C11    C Y N 199 
HT  C12    C Y N 200 
HT  C13    C Y N 201 
HT  C14    C Y N 202 
HT  N3     N Y N 203 
HT  C15    C Y N 204 
HT  C16    C Y N 205 
HT  N4     N Y N 206 
HT  C17    C Y N 207 
HT  C18    C Y N 208 
HT  C19    C Y N 209 
HT  C20    C Y N 210 
HT  N5     N N N 211 
HT  C21    C N N 212 
HT  C22    C N N 213 
HT  N6     N N N 214 
HT  C23    C N N 215 
HT  C24    C N N 216 
HT  C25    C N N 217 
HT  HO1    H N N 218 
HT  H2     H N N 219 
HT  H3     H N N 220 
HT  H5     H N N 221 
HT  H6     H N N 222 
HT  HN1    H N N 223 
HT  H10    H N N 224 
HT  H11    H N N 225 
HT  H13    H N N 226 
HT  HN3    H N N 227 
HT  H17    H N N 228 
HT  H18    H N N 229 
HT  H20    H N N 230 
HT  H211   H N N 231 
HT  H212   H N N 232 
HT  H221   H N N 233 
HT  H222   H N N 234 
HT  H231   H N N 235 
HT  H232   H N N 236 
HT  H241   H N N 237 
HT  H242   H N N 238 
HT  H253   H N N 239 
HT  H252   H N N 240 
HT  H251   H N N 241 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B7C OP3   P      sing N N 1   
B7C P     OP1    sing N N 2   
B7C P     OP2    doub N N 3   
B7C P     "O5'"  sing N N 4   
B7C "O5'" "C5'"  sing N N 5   
B7C N1    C6     sing N N 6   
B7C N1    C2     sing N N 7   
B7C N1    "C1'"  sing N N 8   
B7C C6    C5     doub N N 9   
B7C C2    O2     doub N N 10  
B7C C2    N3     sing N N 11  
B7C N3    C4     doub N N 12  
B7C C4    N4     sing N N 13  
B7C C4    C5     sing N N 14  
B7C N4    C9     sing N N 15  
B7C C5    C7     sing N N 16  
B7C C7    C8     doub N N 17  
B7C C8    C9     sing N N 18  
B7C "C2'" "C1'"  sing N N 19  
B7C "C2'" "C3'"  sing N N 20  
B7C "C5'" "C4'"  sing N N 21  
B7C "C4'" "O4'"  sing N N 22  
B7C "C4'" "C3'"  sing N N 23  
B7C "O4'" "C1'"  sing N N 24  
B7C "C3'" "O3'"  sing N N 25  
B7C OP3   HOP3   sing N N 26  
B7C OP1   HOP1   sing N N 27  
B7C C6    H6     sing N N 28  
B7C N4    HN4    sing N N 29  
B7C C7    H7     sing N N 30  
B7C C8    H8     sing N N 31  
B7C C9    H9     sing N N 32  
B7C C9    H9A    sing N N 33  
B7C "C2'" "H2'"  sing N N 34  
B7C "C2'" "H2'A" sing N N 35  
B7C "C5'" "H5'"  sing N N 36  
B7C "C5'" "H5'A" sing N N 37  
B7C "C4'" "H4'"  sing N N 38  
B7C "C1'" "H1'"  sing N N 39  
B7C "C3'" "H3'"  sing N N 40  
B7C "O3'" "HO3'" sing N N 41  
DA  OP3   P      sing N N 42  
DA  OP3   HOP3   sing N N 43  
DA  P     OP1    doub N N 44  
DA  P     OP2    sing N N 45  
DA  P     "O5'"  sing N N 46  
DA  OP2   HOP2   sing N N 47  
DA  "O5'" "C5'"  sing N N 48  
DA  "C5'" "C4'"  sing N N 49  
DA  "C5'" "H5'"  sing N N 50  
DA  "C5'" "H5''" sing N N 51  
DA  "C4'" "O4'"  sing N N 52  
DA  "C4'" "C3'"  sing N N 53  
DA  "C4'" "H4'"  sing N N 54  
DA  "O4'" "C1'"  sing N N 55  
DA  "C3'" "O3'"  sing N N 56  
DA  "C3'" "C2'"  sing N N 57  
DA  "C3'" "H3'"  sing N N 58  
DA  "O3'" "HO3'" sing N N 59  
DA  "C2'" "C1'"  sing N N 60  
DA  "C2'" "H2'"  sing N N 61  
DA  "C2'" "H2''" sing N N 62  
DA  "C1'" N9     sing N N 63  
DA  "C1'" "H1'"  sing N N 64  
DA  N9    C8     sing Y N 65  
DA  N9    C4     sing Y N 66  
DA  C8    N7     doub Y N 67  
DA  C8    H8     sing N N 68  
DA  N7    C5     sing Y N 69  
DA  C5    C6     sing Y N 70  
DA  C5    C4     doub Y N 71  
DA  C6    N6     sing N N 72  
DA  C6    N1     doub Y N 73  
DA  N6    H61    sing N N 74  
DA  N6    H62    sing N N 75  
DA  N1    C2     sing Y N 76  
DA  C2    N3     doub Y N 77  
DA  C2    H2     sing N N 78  
DA  N3    C4     sing Y N 79  
DC  OP3   P      sing N N 80  
DC  OP3   HOP3   sing N N 81  
DC  P     OP1    doub N N 82  
DC  P     OP2    sing N N 83  
DC  P     "O5'"  sing N N 84  
DC  OP2   HOP2   sing N N 85  
DC  "O5'" "C5'"  sing N N 86  
DC  "C5'" "C4'"  sing N N 87  
DC  "C5'" "H5'"  sing N N 88  
DC  "C5'" "H5''" sing N N 89  
DC  "C4'" "O4'"  sing N N 90  
DC  "C4'" "C3'"  sing N N 91  
DC  "C4'" "H4'"  sing N N 92  
DC  "O4'" "C1'"  sing N N 93  
DC  "C3'" "O3'"  sing N N 94  
DC  "C3'" "C2'"  sing N N 95  
DC  "C3'" "H3'"  sing N N 96  
DC  "O3'" "HO3'" sing N N 97  
DC  "C2'" "C1'"  sing N N 98  
DC  "C2'" "H2'"  sing N N 99  
DC  "C2'" "H2''" sing N N 100 
DC  "C1'" N1     sing N N 101 
DC  "C1'" "H1'"  sing N N 102 
DC  N1    C2     sing N N 103 
DC  N1    C6     sing N N 104 
DC  C2    O2     doub N N 105 
DC  C2    N3     sing N N 106 
DC  N3    C4     doub N N 107 
DC  C4    N4     sing N N 108 
DC  C4    C5     sing N N 109 
DC  N4    H41    sing N N 110 
DC  N4    H42    sing N N 111 
DC  C5    C6     doub N N 112 
DC  C5    H5     sing N N 113 
DC  C6    H6     sing N N 114 
DG  OP3   P      sing N N 115 
DG  OP3   HOP3   sing N N 116 
DG  P     OP1    doub N N 117 
DG  P     OP2    sing N N 118 
DG  P     "O5'"  sing N N 119 
DG  OP2   HOP2   sing N N 120 
DG  "O5'" "C5'"  sing N N 121 
DG  "C5'" "C4'"  sing N N 122 
DG  "C5'" "H5'"  sing N N 123 
DG  "C5'" "H5''" sing N N 124 
DG  "C4'" "O4'"  sing N N 125 
DG  "C4'" "C3'"  sing N N 126 
DG  "C4'" "H4'"  sing N N 127 
DG  "O4'" "C1'"  sing N N 128 
DG  "C3'" "O3'"  sing N N 129 
DG  "C3'" "C2'"  sing N N 130 
DG  "C3'" "H3'"  sing N N 131 
DG  "O3'" "HO3'" sing N N 132 
DG  "C2'" "C1'"  sing N N 133 
DG  "C2'" "H2'"  sing N N 134 
DG  "C2'" "H2''" sing N N 135 
DG  "C1'" N9     sing N N 136 
DG  "C1'" "H1'"  sing N N 137 
DG  N9    C8     sing Y N 138 
DG  N9    C4     sing Y N 139 
DG  C8    N7     doub Y N 140 
DG  C8    H8     sing N N 141 
DG  N7    C5     sing Y N 142 
DG  C5    C6     sing N N 143 
DG  C5    C4     doub Y N 144 
DG  C6    O6     doub N N 145 
DG  C6    N1     sing N N 146 
DG  N1    C2     sing N N 147 
DG  N1    H1     sing N N 148 
DG  C2    N2     sing N N 149 
DG  C2    N3     doub N N 150 
DG  N2    H21    sing N N 151 
DG  N2    H22    sing N N 152 
DG  N3    C4     sing N N 153 
DT  OP3   P      sing N N 154 
DT  OP3   HOP3   sing N N 155 
DT  P     OP1    doub N N 156 
DT  P     OP2    sing N N 157 
DT  P     "O5'"  sing N N 158 
DT  OP2   HOP2   sing N N 159 
DT  "O5'" "C5'"  sing N N 160 
DT  "C5'" "C4'"  sing N N 161 
DT  "C5'" "H5'"  sing N N 162 
DT  "C5'" "H5''" sing N N 163 
DT  "C4'" "O4'"  sing N N 164 
DT  "C4'" "C3'"  sing N N 165 
DT  "C4'" "H4'"  sing N N 166 
DT  "O4'" "C1'"  sing N N 167 
DT  "C3'" "O3'"  sing N N 168 
DT  "C3'" "C2'"  sing N N 169 
DT  "C3'" "H3'"  sing N N 170 
DT  "O3'" "HO3'" sing N N 171 
DT  "C2'" "C1'"  sing N N 172 
DT  "C2'" "H2'"  sing N N 173 
DT  "C2'" "H2''" sing N N 174 
DT  "C1'" N1     sing N N 175 
DT  "C1'" "H1'"  sing N N 176 
DT  N1    C2     sing N N 177 
DT  N1    C6     sing N N 178 
DT  C2    O2     doub N N 179 
DT  C2    N3     sing N N 180 
DT  N3    C4     sing N N 181 
DT  N3    H3     sing N N 182 
DT  C4    O4     doub N N 183 
DT  C4    C5     sing N N 184 
DT  C5    C7     sing N N 185 
DT  C5    C6     doub N N 186 
DT  C7    H71    sing N N 187 
DT  C7    H72    sing N N 188 
DT  C7    H73    sing N N 189 
DT  C6    H6     sing N N 190 
HOH O     H1     sing N N 191 
HOH O     H2     sing N N 192 
HT  O1    C1     sing N N 193 
HT  O1    HO1    sing N N 194 
HT  C1    C2     doub Y N 195 
HT  C1    C6     sing Y N 196 
HT  C2    C3     sing Y N 197 
HT  C2    H2     sing N N 198 
HT  C3    C4     doub Y N 199 
HT  C3    H3     sing N N 200 
HT  C4    C5     sing Y N 201 
HT  C4    C7     sing Y N 202 
HT  C5    C6     doub Y N 203 
HT  C5    H5     sing N N 204 
HT  C6    H6     sing N N 205 
HT  C7    N1     sing Y N 206 
HT  C7    N2     doub Y N 207 
HT  N1    C8     sing Y N 208 
HT  N1    HN1    sing N N 209 
HT  C8    C9     doub Y N 210 
HT  C8    C13    sing Y N 211 
HT  C9    N2     sing Y N 212 
HT  C9    C10    sing Y N 213 
HT  C10   C11    doub Y N 214 
HT  C10   H10    sing N N 215 
HT  C11   C12    sing Y N 216 
HT  C11   H11    sing N N 217 
HT  C12   C13    doub Y N 218 
HT  C12   C14    sing Y N 219 
HT  C13   H13    sing N N 220 
HT  C14   N3     sing Y N 221 
HT  C14   N4     doub Y N 222 
HT  N3    C15    sing Y N 223 
HT  N3    HN3    sing N N 224 
HT  C15   C16    doub Y N 225 
HT  C15   C20    sing Y N 226 
HT  C16   N4     sing Y N 227 
HT  C16   C17    sing Y N 228 
HT  C17   C18    doub Y N 229 
HT  C17   H17    sing N N 230 
HT  C18   C19    sing Y N 231 
HT  C18   H18    sing N N 232 
HT  C19   C20    doub Y N 233 
HT  C19   N5     sing N N 234 
HT  C20   H20    sing N N 235 
HT  N5    C21    sing N N 236 
HT  N5    C24    sing N N 237 
HT  C21   C22    sing N N 238 
HT  C21   H211   sing N N 239 
HT  C21   H212   sing N N 240 
HT  C22   N6     sing N N 241 
HT  C22   H221   sing N N 242 
HT  C22   H222   sing N N 243 
HT  N6    C23    sing N N 244 
HT  N6    C25    sing N N 245 
HT  C23   C24    sing N N 246 
HT  C23   H231   sing N N 247 
HT  C23   H232   sing N N 248 
HT  C24   H241   sing N N 249 
HT  C24   H242   sing N N 250 
HT  C25   H253   sing N N 251 
HT  C25   H252   sing N N 252 
HT  C25   H251   sing N N 253 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
3N4O 'double helix'         
3N4O 'b-form double helix'  
3N4O 'mismatched base pair' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1  1_555 B DG 12 1_555 0.142  -0.166 -0.045 -3.081 -1.728  -2.722 1  D_DC1:DG24_E  D 1  ? E 24 ? 19 1 
1 A DG 2  1_555 B DC 11 1_555 -0.024 -0.282 0.084  -1.866 -11.094 -6.598 2  D_DG2:DC23_E  D 2  ? E 23 ? 19 1 
1 A DC 3  1_555 B DG 10 1_555 0.027  -0.143 0.288  -2.603 -0.652  -2.444 3  D_DC3:DG22_E  D 3  ? E 22 ? 19 1 
1 A DG 4  1_555 B DC 9  1_555 -0.255 -0.194 0.113  8.578  -1.951  -2.780 4  D_DG4:DC21_E  D 4  ? E 21 ? 19 1 
1 A DA 6  1_555 B DT 7  1_555 -0.139 -0.135 -0.136 1.596  -18.110 5.261  5  D_DA6:DT19_E  D 6  ? E 19 ? 20 1 
1 A DT 7  1_555 B DA 6  1_555 0.016  -0.148 0.384  -3.106 -16.755 0.654  6  D_DT7:DA18_E  D 7  ? E 18 ? 20 1 
1 A DC 9  1_555 B DG 4  1_555 0.021  -0.143 -0.339 -7.445 -1.109  -3.049 7  D_DC9:DG16_E  D 9  ? E 16 ? 19 1 
1 A DG 10 1_555 B DC 3  1_555 -0.107 -0.263 -0.061 2.179  1.254   -1.059 8  D_DG10:DC15_E D 10 ? E 15 ? 19 1 
1 A DC 11 1_555 B DG 2  1_555 0.007  -0.233 0.584  -5.027 -13.017 -8.654 9  D_DC11:DG14_E D 11 ? E 14 ? 19 1 
1 A DG 12 1_555 B DC 1  1_555 -0.024 -0.019 0.259  15.574 7.892   -2.873 10 D_DG12:DC13_E D 12 ? E 13 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1  1_555 B DG 12 1_555 A DG 2  1_555 B DC 11 1_555 -0.486 0.173  3.277 0.086  4.564  39.052 -0.287 0.733  3.275 6.798  
-0.127 39.308 1 DD_DC1DG2:DC23DG24_EE   D 1  ? E 24 ? D 2  ? E 23 ? 
1 A DG 2  1_555 B DC 11 1_555 A DC 3  1_555 B DG 10 1_555 0.829  0.286  3.436 0.140  -4.739 35.329 1.187  -1.333 3.374 -7.765 
-0.229 35.635 2 DD_DG2DC3:DG22DC23_EE   D 2  ? E 23 ? D 3  ? E 22 ? 
1 A DC 3  1_555 B DG 10 1_555 A DG 4  1_555 B DC 9  1_555 0.038  0.839  3.052 3.134  4.603  28.191 0.704  0.596  3.132 9.334  
-6.355 28.724 3 DD_DC3DG4:DC21DG22_EE   D 3  ? E 22 ? D 4  ? E 21 ? 
1 A DG 4  1_555 B DC 9  1_555 A DA 6  1_555 B DT 7  1_555 -0.332 -0.200 6.695 -0.012 7.884  75.246 -0.648 0.270  6.651 6.440  
0.010  75.597 4 DD_DG4DA6:DT19DC21_EE   D 4  ? E 21 ? D 6  ? E 19 ? 
1 A DA 6  1_555 B DT 7  1_555 A DT 7  1_555 B DA 6  1_555 0.215  -0.635 3.381 -3.294 -2.396 34.630 -0.683 -0.877 3.382 -4.008 
5.509  34.861 5 DD_DA6DT7:DA18DT19_EE   D 6  ? E 19 ? D 7  ? E 18 ? 
1 A DT 7  1_555 B DA 6  1_555 A DC 9  1_555 B DG 4  1_555 -0.082 0.018  6.473 8.971  3.290  74.128 -0.187 0.616  6.426 2.718  
-7.413 74.654 6 DD_DT7DC9:DG16DA18_EE   D 7  ? E 18 ? D 9  ? E 16 ? 
1 A DC 9  1_555 B DG 4  1_555 A DG 10 1_555 B DC 3  1_555 0.100  1.152  3.243 -3.070 1.708  30.998 1.818  -0.769 3.276 3.183  
5.721  31.192 7 DD_DC9DG10:DC15DG16_EE  D 9  ? E 16 ? D 10 ? E 15 ? 
1 A DG 10 1_555 B DC 3  1_555 A DC 11 1_555 B DG 2  1_555 -1.240 0.404  3.520 -5.961 -3.048 36.359 1.090  1.071  3.627 -4.833 
9.454  36.950 8 DD_DG10DC11:DG14DC15_EE D 10 ? E 15 ? D 11 ? E 14 ? 
1 A DC 11 1_555 B DG 2  1_555 A DG 12 1_555 B DC 1  1_555 0.851  0.417  2.922 0.491  -3.117 37.922 0.992  -1.249 2.890 -4.786 
-0.754 38.048 9 DD_DC11DG12:DC13DG14_EE D 11 ? E 14 ? D 12 ? E 13 ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" HT  
3 water                                                                   HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   1DNH 
_pdbx_initial_refinement_model.details          ? 
#