HEADER LIPID BINDING PROTEIN 24-MAY-10 3N54 TITLE CRYSTAL STRUCTURE OF THE GERBC PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPORE GERMINATION PROTEIN B3; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: GERBC, RESIDUES 25-374; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: BSU35820, GERBC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: A MODIFIED PET15B VECTOR KEYWDS A NOVEL FOLD, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.LI,B.SETLOW,P.SETLOW,B.HAO REVDAT 3 21-FEB-24 3N54 1 REMARK REVDAT 2 15-SEP-10 3N54 1 JRNL REVDAT 1 04-AUG-10 3N54 0 JRNL AUTH Y.LI,B.SETLOW,P.SETLOW,B.HAO JRNL TITL CRYSTAL STRUCTURE OF THE GERBC COMPONENT OF A BACILLUS JRNL TITL 2 SUBTILIS SPORE GERMINANT RECEPTOR. JRNL REF J.MOL.BIOL. V. 402 8 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20654628 JRNL DOI 10.1016/J.JMB.2010.07.018 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31175 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1654 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2265 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.338 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2594 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1781 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3497 ; 1.153 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4359 ; 0.778 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 307 ; 4.048 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;32.873 ;24.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 483 ;11.805 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.244 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 378 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2780 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 493 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1543 ; 0.518 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 629 ; 0.062 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2503 ; 0.979 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1051 ; 1.087 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 994 ; 1.873 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 68 REMARK 3 ORIGIN FOR THE GROUP (A): -84.4095 24.2647 -39.8635 REMARK 3 T TENSOR REMARK 3 T11: 0.0796 T22: 0.0595 REMARK 3 T33: 0.0216 T12: 0.0116 REMARK 3 T13: -0.0743 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 10.3609 L22: 3.6370 REMARK 3 L33: 6.4239 L12: -2.2938 REMARK 3 L13: -4.6730 L23: 3.1700 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: -0.2027 S13: -0.1072 REMARK 3 S21: -0.0915 S22: 0.0757 S23: -0.1015 REMARK 3 S31: 0.1721 S32: -0.0737 S33: -0.1095 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 69 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): -73.1726 21.2654 -18.6662 REMARK 3 T TENSOR REMARK 3 T11: 0.1951 T22: 0.0958 REMARK 3 T33: 0.0653 T12: -0.0254 REMARK 3 T13: 0.0372 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 2.2352 L22: 1.2880 REMARK 3 L33: 1.8593 L12: -1.0350 REMARK 3 L13: 1.6214 L23: -0.4260 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: -0.2839 S13: 0.0030 REMARK 3 S21: 0.1582 S22: -0.0158 S23: -0.0459 REMARK 3 S31: 0.1522 S32: -0.1324 S33: 0.0398 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 147 B 225 REMARK 3 ORIGIN FOR THE GROUP (A): -65.3204 14.4488 -5.6733 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.1190 REMARK 3 T33: 0.0400 T12: 0.0064 REMARK 3 T13: -0.0176 T23: 0.1258 REMARK 3 L TENSOR REMARK 3 L11: 2.9922 L22: 7.5125 REMARK 3 L33: 4.2479 L12: 1.2235 REMARK 3 L13: -0.4792 L23: -2.2385 REMARK 3 S TENSOR REMARK 3 S11: 0.0621 S12: -0.3832 S13: -0.0949 REMARK 3 S21: 0.6601 S22: -0.1157 S23: -0.1403 REMARK 3 S31: -0.1105 S32: -0.2746 S33: 0.0536 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 226 B 343 REMARK 3 ORIGIN FOR THE GROUP (A): -52.2994 12.6554 2.4542 REMARK 3 T TENSOR REMARK 3 T11: 0.2962 T22: 0.1004 REMARK 3 T33: 0.3839 T12: -0.1492 REMARK 3 T13: -0.2756 T23: 0.2673 REMARK 3 L TENSOR REMARK 3 L11: 3.6776 L22: 5.5702 REMARK 3 L33: 4.9314 L12: 0.7534 REMARK 3 L13: -1.6700 L23: -3.6988 REMARK 3 S TENSOR REMARK 3 S11: 0.1697 S12: -0.1837 S13: 0.0992 REMARK 3 S21: 1.0809 S22: -0.8186 S23: -1.1630 REMARK 3 S31: -0.5654 S32: 0.7921 S33: 0.6489 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3N54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33056 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 21.80 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 45.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.30 REMARK 200 R MERGE FOR SHELL (I) : 0.84000 REMARK 200 R SYM FOR SHELL (I) : 0.84000 REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 1.5-1.7 M REMARK 280 AMMONIUM SULFATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 71.39250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.21848 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 62.60900 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 71.39250 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.21848 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 62.60900 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 71.39250 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.21848 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 62.60900 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 71.39250 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 41.21848 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 62.60900 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 71.39250 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 41.21848 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 62.60900 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 71.39250 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 41.21848 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 62.60900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 82.43696 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 125.21800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 82.43696 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 125.21800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 82.43696 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 125.21800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 82.43696 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 125.21800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 82.43696 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 125.21800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 82.43696 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 125.21800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -381.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -142.78500 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 82.43696 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -62.60900 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 53150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 82100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1352.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -71.39250 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 123.65544 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -142.78500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -142.78500 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 82.43696 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -62.60900 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 82.43696 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -62.60900 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 -71.39250 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 -41.21848 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -62.60900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 B 5 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 B 8 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 57 REMARK 465 ASP B 58 REMARK 465 SER B 59 REMARK 465 GLN B 60 REMARK 465 ALA B 61 REMARK 465 SER B 62 REMARK 465 ASN B 147 REMARK 465 GLN B 148 REMARK 465 GLN B 149 REMARK 465 GLN B 150 REMARK 465 PRO B 151 REMARK 465 MET B 152 REMARK 465 PRO B 153 REMARK 465 SER B 154 REMARK 465 GLU B 155 REMARK 465 LYS B 156 REMARK 465 LEU B 157 REMARK 465 ILE B 158 REMARK 465 ASP B 159 REMARK 465 LEU B 160 REMARK 465 THR B 161 REMARK 465 THR B 162 REMARK 465 HIS B 163 REMARK 465 SER B 164 REMARK 465 GLY B 165 REMARK 465 TYR B 166 REMARK 465 ASN B 167 REMARK 465 GLY B 168 REMARK 465 PRO B 287 REMARK 465 ASN B 288 REMARK 465 GLU B 289 REMARK 465 ASN B 290 REMARK 465 SER B 291 REMARK 465 PHE B 369 REMARK 465 GLY B 370 REMARK 465 THR B 371 REMARK 465 VAL B 372 REMARK 465 GLY B 373 REMARK 465 LYS B 374 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 408 O HOH B 535 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 42 32.44 -90.75 REMARK 500 HIS B 43 82.98 44.98 REMARK 500 MET B 171 67.92 -151.55 REMARK 500 LYS B 200 91.62 74.12 REMARK 500 THR B 242 -158.64 -153.34 REMARK 500 GLU B 265 95.04 -165.82 REMARK 500 GLN B 285 98.65 56.83 REMARK 500 LYS B 294 -168.36 82.71 REMARK 500 LYS B 346 -48.15 -28.04 REMARK 500 HIS B 348 50.91 -146.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 375 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 377 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 378 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 379 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 380 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 382 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 383 DBREF 3N54 B 25 374 UNP P39571 GERBC_BACSU 25 374 SEQRES 1 B 350 ASP ILE GLU GLN LEU SER PHE ALA ARG GLY LEU ALA ILE SEQRES 2 B 350 ASP GLU THR ASN ASP HIS GLN TYR LYS LEU THR TYR GLN SEQRES 3 B 350 ASN LEU LEU PRO GLN SER GLU ASP SER GLN ALA SER GLY SEQRES 4 B 350 LYS PRO GLU PHE VAL ASN VAL THR SER HIS GLY LYS THR SEQRES 5 B 350 ILE LEU GLU ALA VAL SER ASP VAL SER ILE LYS ASP PRO SEQRES 6 B 350 PRO VAL TYR SER ASP HIS LEU LYS VAL ILE LEU LEU GLY SEQRES 7 B 350 GLU LYS LEU MET ARG ASN GLN ASN VAL ASP GLN VAL LEU SEQRES 8 B 350 ASN HIS PHE ILE ARG ASP ASP GLU LEU ARG ARG SER SER SEQRES 9 B 350 TYR LEU MET ALA ALA ARG GLY ASN ALA ALA ASP VAL PHE SEQRES 10 B 350 THR LYS GLY ASN PRO ASN GLN GLN GLN PRO MET PRO SER SEQRES 11 B 350 GLU LYS LEU ILE ASP LEU THR THR HIS SER GLY TYR ASN SEQRES 12 B 350 GLY LYS ILE MET ILE PRO LEU ARG ILE GLY ARG ALA SER SEQRES 13 B 350 VAL TYR SER GLN ASN GLY TYR SER TYR LEU ILE GLN ALA SEQRES 14 B 350 VAL LYS ASN GLU LYS GLY LYS ALA LYS TYR ASP GLY ALA SEQRES 15 B 350 GLY ILE ILE LYS ARG GLY SER ASN LYS LEU VAL GLY PHE SEQRES 16 B 350 LEU SER ALA ASP GLU THR GLN THR LEU SER TRP VAL MET SEQRES 17 B 350 GLY THR ILE GLN GLY GLY VAL MET PRO THR THR ASP LYS SEQRES 18 B 350 GLY HIS PRO ILE THR PHE GLU ILE LYS LYS SER LYS THR SEQRES 19 B 350 LYS ILE LYS PRO VAL ILE GLU ASN GLY LYS PRO VAL PHE SEQRES 20 B 350 HIS ILE SER VAL LYS THR LYS GLY ILE LEU THR GLU ASP SEQRES 21 B 350 GLN ASN PRO ASN GLU ASN SER PHE SER LYS SER TYR LEU SEQRES 22 B 350 HIS ARG LEU GLU ASN ILE PHE GLU LYS LYS LEU GLU ARG SEQRES 23 B 350 ASP VAL LYS GLN VAL MET ASP LYS LEU GLN HIS GLU TYR SEQRES 24 B 350 LYS THR ASP PRO VAL PHE LEU SER ASP HIS ILE ARG ILE SEQRES 25 B 350 GLN HIS PRO ASP TYR TRP ASN LYS VAL LYS GLY HIS TRP SEQRES 26 B 350 ASP GLU ILE PHE SER GLU THR ASP PHE LYS TYR ASP ILE SEQRES 27 B 350 SER PHE LYS ILE ILE ASN PHE GLY THR VAL GLY LYS HET SO4 B 1 5 HET SO4 B 2 5 HET SO4 B 3 5 HET SO4 B 4 5 HET SO4 B 5 5 HET SO4 B 6 5 HET SO4 B 7 5 HET SO4 B 8 5 HET SO4 B 9 5 HET CL B 375 1 HET CL B 376 1 HET CL B 377 1 HET CL B 378 1 HET CL B 379 1 HET CL B 380 1 HET CL B 381 1 HET CL B 382 1 HET CL B 383 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 2 SO4 9(O4 S 2-) FORMUL 11 CL 9(CL 1-) FORMUL 20 HOH *178(H2 O) HELIX 1 1 PRO B 65 VAL B 68 5 4 HELIX 2 2 SER B 82 ASP B 88 1 7 HELIX 3 3 GLY B 102 GLN B 109 1 8 HELIX 4 4 ASN B 110 ILE B 119 1 10 HELIX 5 5 ARG B 120 LEU B 124 5 5 HELIX 6 6 ARG B 175 ASN B 185 1 11 HELIX 7 7 SER B 221 MET B 232 1 12 HELIX 8 8 LYS B 294 GLU B 322 1 29 HELIX 9 9 PHE B 329 HIS B 338 1 10 HELIX 10 10 HIS B 338 LYS B 346 1 9 HELIX 11 11 HIS B 348 THR B 356 1 9 SHEET 1 A 3 ALA B 32 GLU B 39 0 SHEET 2 A 3 TYR B 45 LEU B 52 -1 O GLN B 50 N GLY B 34 SHEET 3 A 3 VAL B 70 GLU B 79 -1 O GLU B 79 N TYR B 45 SHEET 1 B 5 VAL B 98 LEU B 101 0 SHEET 2 B 5 TYR B 129 ALA B 133 1 O MET B 131 N LEU B 101 SHEET 3 B 5 TYR B 189 ASN B 196 1 O GLN B 192 N ALA B 132 SHEET 4 B 5 ALA B 201 ILE B 209 -1 O GLY B 207 N ILE B 191 SHEET 5 B 5 LEU B 216 LEU B 220 -1 O LEU B 220 N ALA B 206 SHEET 1 C 4 VAL B 239 ASP B 244 0 SHEET 2 C 4 HIS B 247 ILE B 264 -1 O ILE B 249 N THR B 242 SHEET 3 C 4 PRO B 269 THR B 282 -1 O LYS B 278 N LYS B 255 SHEET 4 C 4 ASP B 357 ILE B 366 1 O SER B 363 N VAL B 275 CISPEP 1 LYS B 169 ILE B 170 0 4.76 CISPEP 2 MET B 171 ILE B 172 0 -7.41 CISPEP 3 ILE B 172 PRO B 173 0 2.06 CISPEP 4 LYS B 198 GLY B 199 0 -1.78 CISPEP 5 GLY B 199 LYS B 200 0 -3.38 CISPEP 6 GLU B 265 ASN B 266 0 -5.67 CISPEP 7 GLN B 285 ASN B 286 0 0.64 CISPEP 8 SER B 293 LYS B 294 0 1.25 SITE 1 AC1 7 LYS B 307 ARG B 310 ASP B 311 LYS B 318 SITE 2 AC1 7 HOH B 384 HOH B 396 HOH B 401 SITE 1 AC2 6 HIS B 43 GLN B 44 TYR B 45 ALA B 80 SITE 2 AC2 6 VAL B 81 HOH B 532 SITE 1 AC3 7 SER B 93 ASP B 94 HIS B 95 LYS B 97 SITE 2 AC3 7 ARG B 125 ARG B 126 HOH B 411 SITE 1 AC4 5 HOH B 17 HIS B 73 PHE B 141 THR B 142 SITE 2 AC4 5 LYS B 143 SITE 1 AC5 1 ARG B 125 SITE 1 AC6 6 LYS B 104 ASN B 108 HIS B 247 GLN B 285 SITE 2 AC6 6 CL B 376 HOH B 468 SITE 1 AC7 8 ARG B 107 VAL B 217 GLY B 218 THR B 243 SITE 2 AC7 8 LYS B 245 GLY B 246 GLU B 322 TYR B 323 SITE 1 AC8 2 LYS B 87 GLN B 113 SITE 1 AC9 4 HIS B 338 PRO B 339 ASP B 340 TYR B 341 SITE 1 BC1 2 GLN B 184 HOH B 501 SITE 1 BC2 1 SO4 B 6 SITE 1 BC3 3 TYR B 49 LYS B 75 GLU B 123 SITE 1 BC4 2 GLN B 28 HOH B 533 SITE 1 BC5 1 ARG B 178 SITE 1 BC6 1 HOH B 519 SITE 1 BC7 1 ARG B 178 SITE 1 BC8 3 VAL B 81 SER B 82 HOH B 537 CRYST1 142.785 142.785 187.827 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007004 0.004043 0.000000 0.00000 SCALE2 0.000000 0.008087 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005324 0.00000