HEADER TRANSFERASE/TRANSFERASE INHIBITOR 25-MAY-10 3N5E TITLE CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE SYNTHASE BOUND TO A PEPTIDE TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TSASE, TS; COMPND 5 EC: 2.1.1.45; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: TSASE, TS; COMPND 11 EC: 2.1.1.45; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: SYNTHETIC PEPTIDE LR; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TYMS, TS, OK/SW-CL.29; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TYMS, TS, OK/SW-CL.29; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: SYNTHETIC PEPTIDE (8MER) KEYWDS PEPTIDE INHIBITOR, PROTEIN-PEPTIDE COMPLEX, INTERFACE INHIBITOR, KEYWDS 2 TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.POZZI,D.CARDINALE,G.GUAITOLI,D.TONDI,R.LUCIANI,H.MYLLYKALLIO, AUTHOR 2 S.FERRARI,M.P.COSTI,S.MANGANI REVDAT 3 06-SEP-23 3N5E 1 SEQADV LINK REVDAT 2 24-JUL-13 3N5E 1 JRNL VERSN REVDAT 1 08-JUN-11 3N5E 0 JRNL AUTH D.CARDINALE,G.GUAITOLI,D.TONDI,R.LUCIANI,S.HENRICH, JRNL AUTH 2 O.M.SALO-AHEN,S.FERRARI,G.MARVERTI,D.GUERRIERI,A.LIGABUE, JRNL AUTH 3 C.FRASSINETI,C.POZZI,S.MANGANI,D.FESSAS,R.GUERRINI, JRNL AUTH 4 G.PONTERINI,R.C.WADE,M.P.COSTI JRNL TITL PROTEIN-PROTEIN INTERFACE-BINDING PEPTIDES INHIBIT THE JRNL TITL 2 CANCER THERAPY TARGET HUMAN THYMIDYLATE SYNTHASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 E542 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21795601 JRNL DOI 10.1073/PNAS.1104829108 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 37678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2773 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4339 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.212 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.146 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4466 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6035 ; 1.496 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 529 ; 6.821 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;37.816 ;23.318 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 773 ;16.669 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;17.694 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 636 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3383 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2657 ; 0.802 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4293 ; 1.565 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1809 ; 2.315 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1742 ; 3.740 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): -49.4978 7.8635 0.2202 REMARK 3 T TENSOR REMARK 3 T11: 0.2077 T22: 0.0544 REMARK 3 T33: 0.1614 T12: 0.0465 REMARK 3 T13: 0.0747 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 1.8053 L22: 2.4460 REMARK 3 L33: 2.0267 L12: -0.5876 REMARK 3 L13: -0.1882 L23: -0.2639 REMARK 3 S TENSOR REMARK 3 S11: 0.2729 S12: 0.2744 S13: 0.2910 REMARK 3 S21: -0.3266 S22: -0.0901 S23: -0.1716 REMARK 3 S31: -0.1080 S32: 0.1088 S33: -0.1828 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): -49.4603 -7.9131 23.5995 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.0519 REMARK 3 T33: 0.1485 T12: -0.0470 REMARK 3 T13: -0.0793 T23: 0.0470 REMARK 3 L TENSOR REMARK 3 L11: 1.7676 L22: 2.5073 REMARK 3 L33: 1.9788 L12: 0.5893 REMARK 3 L13: 0.2376 L23: -0.1691 REMARK 3 S TENSOR REMARK 3 S11: 0.2715 S12: -0.2507 S13: -0.2930 REMARK 3 S21: 0.3391 S22: -0.0738 S23: -0.1814 REMARK 3 S31: 0.1096 S32: 0.1101 S33: -0.1978 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3N5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.947 REMARK 200 MONOCHROMATOR : SILICON (1 1 1) CHANNEL-CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39745 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 83.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.30300 REMARK 200 R SYM FOR SHELL (I) : 0.30300 REMARK 200 FOR SHELL : 6.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1YPV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% SATURATED AMMONIUM SULFATE, 20MM REMARK 280 BME, 0.1M TRIS PH8.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.41333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.82667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE SYNTHETIC PEPTIDE LR IS POLYPEPTIDE, A MEMBER OF INHIBITOR REMARK 400 CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: SYNTHETIC PEPTIDE LR REMARK 400 CHAIN: D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 MET A 13 REMARK 465 PRO A 14 REMARK 465 VAL A 15 REMARK 465 ALA A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 GLU A 19 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 ARG A 22 REMARK 465 ARG A 23 REMARK 465 PRO A 24 REMARK 465 LEU A 25 REMARK 465 PRO A 26 REMARK 465 PRO A 27 REMARK 465 ALA A 28 REMARK 465 ALA A 29 REMARK 465 GLN A 30 REMARK 465 GLU A 31 REMARK 465 ARG A 32 REMARK 465 ASP A 33 REMARK 465 ALA A 34 REMARK 465 GLU A 35 REMARK 465 PRO A 36 REMARK 465 ARG A 37 REMARK 465 ILE A 120 REMARK 465 TRP A 121 REMARK 465 ASP A 122 REMARK 465 ALA A 123 REMARK 465 ASN A 124 REMARK 465 GLY A 125 REMARK 465 SER A 126 REMARK 465 ARG A 127 REMARK 465 ASP A 128 REMARK 465 PHE A 129 REMARK 465 LEU A 130 REMARK 465 ASP A 131 REMARK 465 SER A 132 REMARK 465 LEU A 133 REMARK 465 GLY A 134 REMARK 465 PHE A 135 REMARK 465 SER A 136 REMARK 465 THR A 137 REMARK 465 ARG A 138 REMARK 465 GLU A 139 REMARK 465 GLU A 140 REMARK 465 GLY A 141 REMARK 465 MET A 323 REMARK 465 ALA A 324 REMARK 465 VAL A 325 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 MET B 13 REMARK 465 PRO B 14 REMARK 465 VAL B 15 REMARK 465 ALA B 16 REMARK 465 GLY B 17 REMARK 465 SER B 18 REMARK 465 GLU B 19 REMARK 465 LEU B 20 REMARK 465 PRO B 21 REMARK 465 ARG B 22 REMARK 465 ARG B 23 REMARK 465 PRO B 24 REMARK 465 LEU B 25 REMARK 465 PRO B 26 REMARK 465 PRO B 27 REMARK 465 ALA B 28 REMARK 465 ALA B 29 REMARK 465 GLN B 30 REMARK 465 GLU B 31 REMARK 465 ARG B 32 REMARK 465 ASP B 33 REMARK 465 ALA B 34 REMARK 465 GLU B 35 REMARK 465 PRO B 36 REMARK 465 ARG B 37 REMARK 465 ILE B 120 REMARK 465 TRP B 121 REMARK 465 ASP B 122 REMARK 465 ALA B 123 REMARK 465 ASN B 124 REMARK 465 GLY B 125 REMARK 465 SER B 126 REMARK 465 ARG B 127 REMARK 465 ASP B 128 REMARK 465 PHE B 129 REMARK 465 LEU B 130 REMARK 465 ASP B 131 REMARK 465 SER B 132 REMARK 465 LEU B 133 REMARK 465 GLY B 134 REMARK 465 PHE B 135 REMARK 465 SER B 136 REMARK 465 THR B 137 REMARK 465 ARG B 138 REMARK 465 GLU B 139 REMARK 465 GLU B 140 REMARK 465 GLY B 141 REMARK 465 MET B 323 REMARK 465 ALA B 324 REMARK 465 VAL B 325 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 114 -82.72 -72.07 REMARK 500 LYS A 116 -49.08 -136.52 REMARK 500 VAL A 118 47.58 -102.75 REMARK 500 LEU A 143 -72.62 -90.92 REMARK 500 PRO A 145 -99.05 -129.04 REMARK 500 VAL A 146 174.46 57.77 REMARK 500 ARG A 159 -66.59 -126.66 REMARK 500 SER A 166 108.84 -57.37 REMARK 500 ASN A 183 78.41 -154.12 REMARK 500 SER A 218 18.01 58.79 REMARK 500 LEU B 143 -74.88 -91.44 REMARK 500 PRO B 145 -65.67 -128.31 REMARK 500 VAL B 146 147.33 -9.69 REMARK 500 TYR B 147 -24.69 -23.97 REMARK 500 ARG B 159 -74.32 -129.39 REMARK 500 ASN B 183 80.06 -151.76 REMARK 500 CYS D 3 146.77 150.34 REMARK 500 GLN D 4 115.87 81.79 REMARK 500 LEU D 5 153.79 -11.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 331 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N5G RELATED DB: PDB DBREF 3N5E A 13 325 UNP P04818 TYSY_HUMAN 1 313 DBREF 3N5E B 13 325 UNP P04818 TYSY_HUMAN 1 313 DBREF 3N5E D 1 8 PDB 3N5E 3N5E 1 8 SEQADV 3N5E MET A 1 UNP P04818 EXPRESSION TAG SEQADV 3N5E ARG A 2 UNP P04818 EXPRESSION TAG SEQADV 3N5E GLY A 3 UNP P04818 EXPRESSION TAG SEQADV 3N5E SER A 4 UNP P04818 EXPRESSION TAG SEQADV 3N5E HIS A 5 UNP P04818 EXPRESSION TAG SEQADV 3N5E HIS A 6 UNP P04818 EXPRESSION TAG SEQADV 3N5E HIS A 7 UNP P04818 EXPRESSION TAG SEQADV 3N5E HIS A 8 UNP P04818 EXPRESSION TAG SEQADV 3N5E HIS A 9 UNP P04818 EXPRESSION TAG SEQADV 3N5E HIS A 10 UNP P04818 EXPRESSION TAG SEQADV 3N5E GLY A 11 UNP P04818 EXPRESSION TAG SEQADV 3N5E SER A 12 UNP P04818 EXPRESSION TAG SEQADV 3N5E MET B 1 UNP P04818 EXPRESSION TAG SEQADV 3N5E ARG B 2 UNP P04818 EXPRESSION TAG SEQADV 3N5E GLY B 3 UNP P04818 EXPRESSION TAG SEQADV 3N5E SER B 4 UNP P04818 EXPRESSION TAG SEQADV 3N5E HIS B 5 UNP P04818 EXPRESSION TAG SEQADV 3N5E HIS B 6 UNP P04818 EXPRESSION TAG SEQADV 3N5E HIS B 7 UNP P04818 EXPRESSION TAG SEQADV 3N5E HIS B 8 UNP P04818 EXPRESSION TAG SEQADV 3N5E HIS B 9 UNP P04818 EXPRESSION TAG SEQADV 3N5E HIS B 10 UNP P04818 EXPRESSION TAG SEQADV 3N5E GLY B 11 UNP P04818 EXPRESSION TAG SEQADV 3N5E SER B 12 UNP P04818 EXPRESSION TAG SEQRES 1 A 325 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 325 PRO VAL ALA GLY SER GLU LEU PRO ARG ARG PRO LEU PRO SEQRES 3 A 325 PRO ALA ALA GLN GLU ARG ASP ALA GLU PRO ARG PRO PRO SEQRES 4 A 325 HIS GLY GLU LEU GLN TYR LEU GLY GLN ILE GLN HIS ILE SEQRES 5 A 325 LEU ARG SCH GLY VAL ARG LYS ASP ASP ARG THR GLY THR SEQRES 6 A 325 GLY THR LEU SER VAL PHE GLY MET GLN ALA ARG TYR SER SEQRES 7 A 325 LEU ARG ASP GLU PHE PRO LEU LEU THR THR LYS ARG VAL SEQRES 8 A 325 PHE TRP LYS GLY VAL LEU GLU GLU LEU LEU TRP PHE ILE SEQRES 9 A 325 LYS GLY SER THR ASN ALA LYS GLU LEU SER SER LYS GLY SEQRES 10 A 325 VAL LYS ILE TRP ASP ALA ASN GLY SER ARG ASP PHE LEU SEQRES 11 A 325 ASP SER LEU GLY PHE SER THR ARG GLU GLU GLY ASP LEU SEQRES 12 A 325 GLY PRO VAL TYR GLY PHE GLN TRP ARG HIS PHE GLY ALA SEQRES 13 A 325 GLU TYR ARG ASP MET GLU SER ASP TYR SER GLY GLN GLY SEQRES 14 A 325 VAL ASP GLN LEU GLN ARG VAL ILE ASP THR ILE LYS THR SEQRES 15 A 325 ASN PRO ASP ASP ARG ARG ILE ILE MET SCH ALA TRP ASN SEQRES 16 A 325 PRO ARG ASP LEU PRO LEU MET ALA LEU PRO PRO SCH HIS SEQRES 17 A 325 ALA LEU CYS GLN PHE TYR VAL VAL ASN SER GLU LEU SER SEQRES 18 A 325 CYS GLN LEU TYR GLN ARG SER GLY ASP MET GLY LEU GLY SEQRES 19 A 325 VAL PRO PHE ASN ILE ALA SER TYR ALA LEU LEU THR TYR SEQRES 20 A 325 MET ILE ALA HIS ILE THR GLY LEU LYS PRO GLY ASP PHE SEQRES 21 A 325 ILE HIS THR LEU GLY ASP ALA HIS ILE TYR LEU ASN HIS SEQRES 22 A 325 ILE GLU PRO LEU LYS ILE GLN LEU GLN ARG GLU PRO ARG SEQRES 23 A 325 PRO PHE PRO LYS LEU ARG ILE LEU ARG LYS VAL GLU LYS SEQRES 24 A 325 ILE ASP ASP PHE LYS ALA GLU ASP PHE GLN ILE GLU GLY SEQRES 25 A 325 TYR ASN PRO HIS PRO THR ILE LYS MET GLU MET ALA VAL SEQRES 1 B 325 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 B 325 PRO VAL ALA GLY SER GLU LEU PRO ARG ARG PRO LEU PRO SEQRES 3 B 325 PRO ALA ALA GLN GLU ARG ASP ALA GLU PRO ARG PRO PRO SEQRES 4 B 325 HIS GLY GLU LEU GLN TYR LEU GLY GLN ILE GLN HIS ILE SEQRES 5 B 325 LEU ARG SCH GLY VAL ARG LYS ASP ASP ARG THR GLY THR SEQRES 6 B 325 GLY THR LEU SER VAL PHE GLY MET GLN ALA ARG TYR SER SEQRES 7 B 325 LEU ARG ASP GLU PHE PRO LEU LEU THR THR LYS ARG VAL SEQRES 8 B 325 PHE TRP LYS GLY VAL LEU GLU GLU LEU LEU TRP PHE ILE SEQRES 9 B 325 LYS GLY SER THR ASN ALA LYS GLU LEU SER SER LYS GLY SEQRES 10 B 325 VAL LYS ILE TRP ASP ALA ASN GLY SER ARG ASP PHE LEU SEQRES 11 B 325 ASP SER LEU GLY PHE SER THR ARG GLU GLU GLY ASP LEU SEQRES 12 B 325 GLY PRO VAL TYR GLY PHE GLN TRP ARG HIS PHE GLY ALA SEQRES 13 B 325 GLU TYR ARG ASP MET GLU SER ASP TYR SER GLY GLN GLY SEQRES 14 B 325 VAL ASP GLN LEU GLN ARG VAL ILE ASP THR ILE LYS THR SEQRES 15 B 325 ASN PRO ASP ASP ARG ARG ILE ILE MET CYS ALA TRP ASN SEQRES 16 B 325 PRO ARG ASP LEU PRO LEU MET ALA LEU PRO PRO SCH HIS SEQRES 17 B 325 ALA LEU CYS GLN PHE TYR VAL VAL ASN SER GLU LEU SER SEQRES 18 B 325 CYS GLN LEU TYR GLN ARG SER GLY ASP MET GLY LEU GLY SEQRES 19 B 325 VAL PRO PHE ASN ILE ALA SER TYR ALA LEU LEU THR TYR SEQRES 20 B 325 MET ILE ALA HIS ILE THR GLY LEU LYS PRO GLY ASP PHE SEQRES 21 B 325 ILE HIS THR LEU GLY ASP ALA HIS ILE TYR LEU ASN HIS SEQRES 22 B 325 ILE GLU PRO LEU LYS ILE GLN LEU GLN ARG GLU PRO ARG SEQRES 23 B 325 PRO PHE PRO LYS LEU ARG ILE LEU ARG LYS VAL GLU LYS SEQRES 24 B 325 ILE ASP ASP PHE LYS ALA GLU ASP PHE GLN ILE GLU GLY SEQRES 25 B 325 TYR ASN PRO HIS PRO THR ILE LYS MET GLU MET ALA VAL SEQRES 1 D 8 LEU SER CYS GLN LEU TYR GLN ARG MODRES 3N5E SCH A 55 CYS S-METHYL-THIO-CYSTEINE MODRES 3N5E SCH A 192 CYS S-METHYL-THIO-CYSTEINE MODRES 3N5E SCH A 207 CYS S-METHYL-THIO-CYSTEINE MODRES 3N5E SCH B 55 CYS S-METHYL-THIO-CYSTEINE MODRES 3N5E SCH B 207 CYS S-METHYL-THIO-CYSTEINE HET SCH A 55 8 HET SCH A 192 8 HET SCH A 207 8 HET SCH B 55 8 HET SCH B 207 8 HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 B 401 5 HETNAM SCH S-METHYL-THIO-CYSTEINE HETNAM SO4 SULFATE ION FORMUL 1 SCH 5(C4 H9 N O2 S2) FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 HOH *255(H2 O) HELIX 1 1 GLY A 41 GLY A 56 1 16 HELIX 2 2 PHE A 92 LYS A 105 1 14 HELIX 3 3 ASN A 109 SER A 114 5 6 HELIX 4 4 PRO A 145 PHE A 154 1 10 HELIX 5 5 ASP A 171 ASN A 183 1 13 HELIX 6 6 ASN A 195 LEU A 199 5 5 HELIX 7 7 LEU A 233 GLY A 254 1 22 HELIX 8 8 HIS A 273 LEU A 281 1 9 HELIX 9 9 LYS A 299 PHE A 303 5 5 HELIX 10 10 LYS A 304 GLU A 306 5 3 HELIX 11 11 GLY B 41 GLY B 56 1 16 HELIX 12 12 PHE B 92 LYS B 105 1 14 HELIX 13 13 ASN B 109 SER B 114 5 6 HELIX 14 14 TYR B 147 PHE B 154 1 8 HELIX 15 15 ASP B 171 ASN B 183 1 13 HELIX 16 16 ASN B 195 LEU B 199 5 5 HELIX 17 17 LEU B 233 THR B 253 1 21 HELIX 18 18 HIS B 273 LEU B 281 1 9 HELIX 19 19 LYS B 299 PHE B 303 5 5 HELIX 20 20 LYS B 304 GLU B 306 5 3 SHEET 1 A 6 VAL A 57 ASP A 60 0 SHEET 2 A 6 GLY A 66 SER A 78 -1 O SER A 69 N VAL A 57 SHEET 3 A 6 LYS A 256 TYR A 270 -1 O PHE A 260 N TYR A 77 SHEET 4 A 6 GLU A 219 ASP A 230 1 N LEU A 224 O THR A 263 SHEET 5 A 6 ALA A 209 VAL A 216 -1 N LEU A 210 O TYR A 225 SHEET 6 A 6 ILE A 190 ALA A 193 -1 N MET A 191 O CYS A 211 SHEET 1 B 2 LYS A 290 ILE A 293 0 SHEET 2 B 2 PHE A 308 GLU A 311 -1 O GLN A 309 N ARG A 292 SHEET 1 C 6 VAL B 57 ASP B 60 0 SHEET 2 C 6 GLY B 66 SER B 78 -1 O SER B 69 N VAL B 57 SHEET 3 C 6 LYS B 256 TYR B 270 -1 O PHE B 260 N TYR B 77 SHEET 4 C 6 GLU B 219 ASP B 230 1 N LEU B 224 O THR B 263 SHEET 5 C 6 ALA B 209 VAL B 216 -1 N LEU B 210 O TYR B 225 SHEET 6 C 6 ILE B 190 ALA B 193 -1 N ALA B 193 O ALA B 209 SHEET 1 D 2 LYS B 290 ILE B 293 0 SHEET 2 D 2 PHE B 308 GLU B 311 -1 O GLN B 309 N ARG B 292 SSBOND 1 CYS B 192 CYS D 3 1555 1555 2.03 LINK C ARG A 54 N SCH A 55 1555 1555 1.33 LINK C SCH A 55 N GLY A 56 1555 1555 1.33 LINK C MET A 191 N SCH A 192 1555 1555 1.33 LINK C SCH A 192 N ALA A 193 1555 1555 1.33 LINK C PRO A 206 N SCH A 207 1555 1555 1.34 LINK C SCH A 207 N HIS A 208 1555 1555 1.32 LINK C ARG B 54 N SCH B 55 1555 1555 1.33 LINK C SCH B 55 N GLY B 56 1555 1555 1.34 LINK C PRO B 206 N SCH B 207 1555 1555 1.34 LINK C SCH B 207 N HIS B 208 1555 1555 1.33 SITE 1 AC1 6 ARG A 188 ARG B 62 ARG B 90 ARG B 197 SITE 2 AC1 6 PRO B 317 THR B 318 SITE 1 AC2 7 ARG A 62 ARG A 90 ARG A 197 LEU A 201 SITE 2 AC2 7 PRO A 317 THR A 318 ARG B 188 SITE 1 AC3 5 ASN A 195 HIS A 208 ARG A 227 SER A 228 SITE 2 AC3 5 ARG B 187 SITE 1 AC4 5 ARG A 187 ASN B 195 HIS B 208 ARG B 227 SITE 2 AC4 5 SER B 228 CRYST1 96.109 96.109 82.240 90.00 90.00 120.00 P 31 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010405 0.006007 0.000000 0.00000 SCALE2 0.000000 0.012014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012160 0.00000