HEADER OXIDOREDUCTASE 26-MAY-10 3N6W TITLE CRYSTAL STRUCTURE OF HUMAN GAMMA-BUTYROBETAINE HYDROXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-BUTYROBETAINE DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAMMA-BUTYROBETAINE,2-OXOGLUTARATE DIOXYGENASE, GAMMA- COMPND 5 BUTYROBETAINE HYDROXYLASE, GAMMA-BBH; COMPND 6 EC: 1.14.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BBH, BBOX, BBOX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: WK6; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS GAMMA-BUTYROBETAINE HYDROXYLASE, BBH, DIOXYGENASE, CARNITINE, KEYWDS 2 HYDROLASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.RUMNIEKS,A.ZELTINS,A.LEONCHIKS,A.KAZAKS,S.KOTELOVICA,K.TARS REVDAT 3 21-FEB-24 3N6W 1 REMARK SEQADV LINK REVDAT 2 15-SEP-10 3N6W 1 JRNL REVDAT 1 21-JUL-10 3N6W 0 JRNL AUTH K.TARS,J.RUMNIEKS,A.ZELTINS,A.KAZAKS,S.KOTELOVICA, JRNL AUTH 2 A.LEONCIKS,J.SHARIPO,A.VIKSNA,J.KUKA,E.LIEPINSH,M.DAMBROVA JRNL TITL CRYSTAL STRUCTURE OF HUMAN GAMMA-BUTYROBETAINE HYDROXYLASE. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 398 634 2010 JRNL REFN ISSN 0006-291X JRNL PMID 20599753 JRNL DOI 10.1016/J.BBRC.2010.06.121 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 142.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 48445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2586 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2852 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2948 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : -0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.129 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3064 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4153 ; 1.156 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 364 ; 5.912 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;34.260 ;23.896 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 530 ;13.704 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;16.779 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2324 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1804 ; 0.676 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2915 ; 1.305 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1260 ; 1.772 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1234 ; 3.069 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 4 REMARK 4 3N6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00340, 0.97856, 0.91840 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51166 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 142.721 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : 0.47700 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SOLOMON, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 1.2 M AMMONIUM REMARK 280 SULFATE, PH 4.5, VAPOUR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.18667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.59333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.89000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.29667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.48333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.18667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 32.59333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 16.29667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 48.89000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 81.48333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -140.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 82.40000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 142.72099 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 16.29667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 ASN A -14 REMARK 465 HIS A -13 REMARK 465 LYS A -12 REMARK 465 VAL A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 ILE A -4 REMARK 465 GLU A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 ILE A 187 REMARK 465 ASP A 188 REMARK 465 ALA A 189 REMARK 465 ASN A 190 REMARK 465 ASN A 191 REMARK 465 VAL A 192 REMARK 465 ALA A 193 REMARK 465 TYR A 194 REMARK 465 THR A 195 REMARK 465 THR A 196 REMARK 465 GLY A 197 REMARK 465 LYS A 198 REMARK 465 THR A 223 REMARK 465 VAL A 224 REMARK 465 THR A 225 REMARK 465 GLY A 226 REMARK 465 GLY A 227 REMARK 465 SER A 351 REMARK 465 TYR A 352 REMARK 465 GLU A 353 REMARK 465 ALA A 354 REMARK 465 GLY A 355 REMARK 465 THR A 356 REMARK 465 GLU A 357 REMARK 465 ILE A 358 REMARK 465 SER A 359 REMARK 465 GLY A 386 REMARK 465 ASN A 387 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 72 CD CE NZ REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 GLN A 222 CG CD OE1 NE2 REMARK 470 ARG A 360 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 24 -4.17 86.96 REMARK 500 ASP A 70 -161.71 -129.49 REMARK 500 LEU A 122 106.84 -59.57 REMARK 500 HIS A 179 62.06 -151.47 REMARK 500 ASP A 265 85.60 -151.42 REMARK 500 TYR A 266 -29.89 68.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 38 SG REMARK 620 2 CYS A 40 SG 111.5 REMARK 620 3 CYS A 43 SG 117.8 112.9 REMARK 620 4 HIS A 82 NE2 113.8 101.4 97.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 DBREF 3N6W A 1 387 UNP O75936 BODG_HUMAN 1 387 SEQADV 3N6W MET A -15 UNP O75936 EXPRESSION TAG SEQADV 3N6W ASN A -14 UNP O75936 EXPRESSION TAG SEQADV 3N6W HIS A -13 UNP O75936 EXPRESSION TAG SEQADV 3N6W LYS A -12 UNP O75936 EXPRESSION TAG SEQADV 3N6W VAL A -11 UNP O75936 EXPRESSION TAG SEQADV 3N6W HIS A -10 UNP O75936 EXPRESSION TAG SEQADV 3N6W HIS A -9 UNP O75936 EXPRESSION TAG SEQADV 3N6W HIS A -8 UNP O75936 EXPRESSION TAG SEQADV 3N6W HIS A -7 UNP O75936 EXPRESSION TAG SEQADV 3N6W HIS A -6 UNP O75936 EXPRESSION TAG SEQADV 3N6W HIS A -5 UNP O75936 EXPRESSION TAG SEQADV 3N6W ILE A -4 UNP O75936 EXPRESSION TAG SEQADV 3N6W GLU A -3 UNP O75936 EXPRESSION TAG SEQADV 3N6W GLY A -2 UNP O75936 EXPRESSION TAG SEQADV 3N6W ARG A -1 UNP O75936 EXPRESSION TAG SEQADV 3N6W SER A 0 UNP O75936 EXPRESSION TAG SEQRES 1 A 403 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS ILE GLU SEQRES 2 A 403 GLY ARG SER MET ALA CYS THR ILE GLN LYS ALA GLU ALA SEQRES 3 A 403 LEU ASP GLY ALA HIS LEU MET GLN ILE LEU TRP TYR ASP SEQRES 4 A 403 GLU GLU GLU SER LEU TYR PRO ALA VAL TRP LEU ARG ASP SEQRES 5 A 403 ASN CYS PRO CYS SER ASP CYS TYR LEU ASP SER ALA LYS SEQRES 6 A 403 ALA ARG LYS LEU LEU VAL GLU ALA LEU ASP VAL ASN ILE SEQRES 7 A 403 GLY ILE LYS GLY LEU ILE PHE ASP ARG LYS LYS VAL TYR SEQRES 8 A 403 ILE THR TRP PRO ASP GLU HIS TYR SER GLU PHE GLN ALA SEQRES 9 A 403 ASP TRP LEU LYS LYS ARG CYS PHE SER LYS GLN ALA ARG SEQRES 10 A 403 ALA LYS LEU GLN ARG GLU LEU PHE PHE PRO GLU CYS GLN SEQRES 11 A 403 TYR TRP GLY SER GLU LEU GLN LEU PRO THR LEU ASP PHE SEQRES 12 A 403 GLU ASP VAL LEU ARG TYR ASP GLU HIS ALA TYR LYS TRP SEQRES 13 A 403 LEU SER THR LEU LYS LYS VAL GLY ILE VAL ARG LEU THR SEQRES 14 A 403 GLY ALA SER ASP LYS PRO GLY GLU VAL SER LYS LEU GLY SEQRES 15 A 403 LYS ARG MET GLY PHE LEU TYR LEU THR PHE TYR GLY HIS SEQRES 16 A 403 THR TRP GLN VAL GLN ASP LYS ILE ASP ALA ASN ASN VAL SEQRES 17 A 403 ALA TYR THR THR GLY LYS LEU SER PHE HIS THR ASP TYR SEQRES 18 A 403 PRO ALA LEU HIS HIS PRO PRO GLY VAL GLN LEU LEU HIS SEQRES 19 A 403 CYS ILE LYS GLN THR VAL THR GLY GLY ASP SER GLU ILE SEQRES 20 A 403 VAL ASP GLY PHE ASN VAL CYS GLN LYS LEU LYS LYS ASN SEQRES 21 A 403 ASN PRO GLN ALA PHE GLN ILE LEU SER SER THR PHE VAL SEQRES 22 A 403 ASP PHE THR ASP ILE GLY VAL ASP TYR CYS ASP PHE SER SEQRES 23 A 403 VAL GLN SER LYS HIS LYS ILE ILE GLU LEU ASP ASP LYS SEQRES 24 A 403 GLY GLN VAL VAL ARG ILE ASN PHE ASN ASN ALA THR ARG SEQRES 25 A 403 ASP THR ILE PHE ASP VAL PRO VAL GLU ARG VAL GLN PRO SEQRES 26 A 403 PHE TYR ALA ALA LEU LYS GLU PHE VAL ASP LEU MET ASN SEQRES 27 A 403 SER LYS GLU SER LYS PHE THR PHE LYS MET ASN PRO GLY SEQRES 28 A 403 ASP VAL ILE THR PHE ASP ASN TRP ARG LEU LEU HIS GLY SEQRES 29 A 403 ARG ARG SER TYR GLU ALA GLY THR GLU ILE SER ARG HIS SEQRES 30 A 403 LEU GLU GLY ALA TYR ALA ASP TRP ASP VAL VAL MET SER SEQRES 31 A 403 ARG LEU ARG ILE LEU ARG GLN ARG VAL GLU ASN GLY ASN HET ZN A 401 1 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 2 ZN ZN 2+ FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 HOH *197(H2 O) HELIX 1 1 ALA A 31 ASN A 37 1 7 HELIX 2 2 LEU A 54 LEU A 58 5 5 HELIX 3 3 ALA A 88 ARG A 94 1 7 HELIX 4 4 SER A 97 PHE A 110 1 14 HELIX 5 5 PHE A 127 TYR A 133 1 7 HELIX 6 6 TYR A 133 GLY A 148 1 16 HELIX 7 7 GLY A 160 GLY A 170 1 11 HELIX 8 8 GLY A 234 ASN A 245 1 12 HELIX 9 9 ASN A 245 SER A 253 1 9 HELIX 10 10 PRO A 303 GLU A 305 5 3 HELIX 11 11 ARG A 306 ASN A 322 1 17 HELIX 12 12 ASP A 368 ASN A 385 1 18 SHEET 1 A 3 ILE A 5 LEU A 11 0 SHEET 2 A 3 LEU A 16 TRP A 21 -1 O LEU A 20 N LYS A 7 SHEET 3 A 3 GLU A 26 PRO A 30 -1 O SER A 27 N ILE A 19 SHEET 1 B 2 TYR A 44 LEU A 45 0 SHEET 2 B 2 ALA A 50 ARG A 51 -1 O ALA A 50 N LEU A 45 SHEET 1 C 3 GLY A 66 PHE A 69 0 SHEET 2 C 3 LYS A 73 THR A 77 -1 O TYR A 75 N ILE A 68 SHEET 3 C 3 TYR A 83 GLN A 87 -1 O SER A 84 N ILE A 76 SHEET 1 D 6 THR A 124 ASP A 126 0 SHEET 2 D 6 ILE A 149 THR A 153 1 O THR A 153 N LEU A 125 SHEET 3 D 6 VAL A 337 ASP A 341 -1 O VAL A 337 N LEU A 152 SHEET 4 D 6 VAL A 214 CYS A 219 -1 N LEU A 217 O ILE A 338 SHEET 5 D 6 LEU A 362 ALA A 367 -1 O ALA A 365 N LEU A 216 SHEET 6 D 6 GLN A 184 ASP A 185 -1 N GLN A 184 O GLY A 364 SHEET 1 E 3 PHE A 328 PHE A 330 0 SHEET 2 E 3 SER A 229 ASP A 233 -1 N ILE A 231 O PHE A 328 SHEET 3 E 3 LEU A 345 GLY A 348 -1 O GLY A 348 N GLU A 230 SHEET 1 F 2 PHE A 256 VAL A 264 0 SHEET 2 F 2 ASP A 268 LYS A 276 -1 O VAL A 271 N ASP A 261 SHEET 1 G 2 ILE A 278 LEU A 280 0 SHEET 2 G 2 VAL A 286 ILE A 289 -1 O VAL A 287 N GLU A 279 LINK SG CYS A 38 ZN ZN A 401 1555 1555 2.17 LINK SG CYS A 40 ZN ZN A 401 1555 1555 2.38 LINK SG CYS A 43 ZN ZN A 401 1555 1555 2.25 LINK NE2 HIS A 82 ZN ZN A 401 1555 1555 2.10 SITE 1 AC1 4 CYS A 38 CYS A 40 CYS A 43 HIS A 82 SITE 1 AC2 6 ASN A 245 PRO A 246 GLN A 247 ALA A 248 SITE 2 AC2 6 GLU A 316 HOH A 561 SITE 1 AC3 7 LEU A 45 ASP A 46 SER A 47 CYS A 267 SITE 2 AC3 7 ASP A 268 ARG A 375 ARG A 382 SITE 1 AC4 2 LYS A 93 ARG A 94 SITE 1 AC5 3 ARG A 101 PRO A 303 HOH A 677 SITE 1 AC6 4 LYS A 52 LYS A 167 ARG A 168 HOH A 653 CRYST1 164.800 164.800 97.780 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006068 0.003503 0.000000 0.00000 SCALE2 0.000000 0.007007 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010227 0.00000