HEADER LIGASE 28-MAY-10 3N8D TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS VRSA-9 D-ALA:D-ALA LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE--D-ALANINE LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-ALANYLALANINE SYNTHETASE, D-ALA-D-ALA LIGASE; COMPND 5 EC: 6.3.2.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: VRSA-9; SOURCE 5 GENE: DDL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS VANCOMYCIN DEPENDENCE, CELL WALL SYNTHESIS, D-ALA:D-ALA LIGASE, KEYWDS 2 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR F.A.SAUL,A.HAOUZ,D.MEZIANE-CHERIF REVDAT 2 06-SEP-23 3N8D 1 REMARK SEQADV REVDAT 1 13-OCT-10 3N8D 0 JRNL AUTH D.MEZIANE-CHERIF,F.A.SAUL,C.MOUBARECK,P.WEBER,A.HAOUZ, JRNL AUTH 2 P.COURVALIN,B.PERICHON JRNL TITL MOLECULAR BASIS OF VANCOMYCIN DEPENDENCE IN VANA-TYPE JRNL TITL 2 STAPHYLOCOCCUS AUREUS VRSA-9. JRNL REF J.BACTERIOL. V. 192 5465 2010 JRNL REFN ISSN 0021-9193 JRNL PMID 20729361 JRNL DOI 10.1128/JB.00613-10 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 28076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1482 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 40 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 838 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5283 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.292 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.298 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5451 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3631 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7383 ; 1.358 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8935 ; 0.863 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 654 ; 6.327 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 265 ;39.175 ;26.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 975 ;16.967 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;24.404 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 821 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5957 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 999 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3295 ; 0.714 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1335 ; 0.114 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5317 ; 1.351 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2156 ; 1.862 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2066 ; 3.171 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3N8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059508. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : SI (111) CHANNEL-CUT REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29619 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 43.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2I87 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 80MM TRIS-HCL, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.18700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.89450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.63550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.89450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.18700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.63550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 69 REMARK 465 GLY A 70 REMARK 465 GLU A 71 REMARK 465 ALA A 72 REMARK 465 HIS A 96 REMARK 465 GLY A 97 REMARK 465 PRO A 98 REMARK 465 LYS A 241 REMARK 465 ASP A 242 REMARK 465 VAL A 243 REMARK 465 ALA A 244 REMARK 465 PHE A 245 REMARK 465 TYR A 246 REMARK 465 ASP A 247 REMARK 465 TYR A 248 REMARK 465 LYS A 249 REMARK 465 SER A 250 REMARK 465 LYS A 251 REMARK 465 TYR A 252 REMARK 465 LYS A 253 REMARK 465 ASP A 254 REMARK 465 GLY A 255 REMARK 465 LYS A 256 REMARK 465 LYS A 354 REMARK 465 ILE A 355 REMARK 465 ASP A 356 REMARK 465 LEU A 357 REMARK 465 GLU A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 MET B 1 REMARK 465 ASN B 69 REMARK 465 GLY B 70 REMARK 465 GLU B 71 REMARK 465 ALA B 72 REMARK 465 LEU B 73 REMARK 465 HIS B 96 REMARK 465 GLY B 97 REMARK 465 PRO B 98 REMARK 465 GLY B 182 REMARK 465 SER B 183 REMARK 465 SER B 184 REMARK 465 TYR B 246 REMARK 465 ASP B 247 REMARK 465 TYR B 248 REMARK 465 LYS B 249 REMARK 465 SER B 250 REMARK 465 LYS B 251 REMARK 465 TYR B 252 REMARK 465 LYS B 253 REMARK 465 ASP B 254 REMARK 465 GLY B 255 REMARK 465 LYS B 256 REMARK 465 VAL B 257 REMARK 465 HIS B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 465 HIS B 362 REMARK 465 HIS B 363 REMARK 465 HIS B 364 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 OG1 CG2 REMARK 470 THR B 2 OG1 CG2 REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 496 O HOH B 497 2.13 REMARK 500 OE1 GLU B 306 O HOH B 367 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 131 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 95.37 -66.90 REMARK 500 ASN A 54 56.92 71.03 REMARK 500 GLU A 101 35.52 -74.87 REMARK 500 ASP A 102 3.85 -155.75 REMARK 500 SER A 183 162.74 165.21 REMARK 500 ASN A 228 -88.99 -118.63 REMARK 500 ALA B 90 146.55 -170.35 REMARK 500 TYR B 158 46.72 -142.82 REMARK 500 ASN B 228 -87.24 -111.06 REMARK 500 ASP B 285 46.79 71.01 REMARK 500 ASP B 299 32.11 -93.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I87 RELATED DB: PDB REMARK 900 RELATED ID: 2I80 RELATED DB: PDB REMARK 900 RELATED ID: 2I8C RELATED DB: PDB DBREF 3N8D A 1 356 UNP Q5HEB7 DDL_STAAC 1 356 DBREF 3N8D B 1 356 UNP Q5HEB7 DDL_STAAC 1 356 SEQADV 3N8D LYS A 260 UNP Q5HEB7 GLN 260 VARIANT SEQADV 3N8D GLU A 283 UNP Q5HEB7 ALA 283 VARIANT SEQADV 3N8D LEU A 357 UNP Q5HEB7 EXPRESSION TAG SEQADV 3N8D GLU A 358 UNP Q5HEB7 EXPRESSION TAG SEQADV 3N8D HIS A 359 UNP Q5HEB7 EXPRESSION TAG SEQADV 3N8D HIS A 360 UNP Q5HEB7 EXPRESSION TAG SEQADV 3N8D HIS A 361 UNP Q5HEB7 EXPRESSION TAG SEQADV 3N8D HIS A 362 UNP Q5HEB7 EXPRESSION TAG SEQADV 3N8D HIS A 363 UNP Q5HEB7 EXPRESSION TAG SEQADV 3N8D HIS A 364 UNP Q5HEB7 EXPRESSION TAG SEQADV 3N8D LYS B 260 UNP Q5HEB7 GLN 260 VARIANT SEQADV 3N8D GLU B 283 UNP Q5HEB7 ALA 283 VARIANT SEQADV 3N8D LEU B 357 UNP Q5HEB7 EXPRESSION TAG SEQADV 3N8D GLU B 358 UNP Q5HEB7 EXPRESSION TAG SEQADV 3N8D HIS B 359 UNP Q5HEB7 EXPRESSION TAG SEQADV 3N8D HIS B 360 UNP Q5HEB7 EXPRESSION TAG SEQADV 3N8D HIS B 361 UNP Q5HEB7 EXPRESSION TAG SEQADV 3N8D HIS B 362 UNP Q5HEB7 EXPRESSION TAG SEQADV 3N8D HIS B 363 UNP Q5HEB7 EXPRESSION TAG SEQADV 3N8D HIS B 364 UNP Q5HEB7 EXPRESSION TAG SEQRES 1 A 364 MET THR LYS GLU ASN ILE CYS ILE VAL PHE GLY GLY LYS SEQRES 2 A 364 SER ALA GLU HIS GLU VAL SER ILE LEU THR ALA GLN ASN SEQRES 3 A 364 VAL LEU ASN ALA ILE ASP LYS ASP LYS TYR HIS VAL ASP SEQRES 4 A 364 ILE ILE TYR ILE THR ASN ASP GLY ASP TRP ARG LYS GLN SEQRES 5 A 364 ASN ASN ILE THR ALA GLU ILE LYS SER THR ASP GLU LEU SEQRES 6 A 364 HIS LEU GLU ASN GLY GLU ALA LEU GLU ILE SER GLN LEU SEQRES 7 A 364 LEU LYS GLU SER SER SER GLY GLN PRO TYR ASP ALA VAL SEQRES 8 A 364 PHE PRO LEU LEU HIS GLY PRO ASN GLY GLU ASP GLY THR SEQRES 9 A 364 ILE GLN GLY LEU PHE GLU VAL LEU ASP VAL PRO TYR VAL SEQRES 10 A 364 GLY ASN GLY VAL LEU SER ALA ALA SER SER MET ASP LYS SEQRES 11 A 364 LEU VAL MET LYS GLN LEU PHE GLU HIS ARG GLY LEU PRO SEQRES 12 A 364 GLN LEU PRO TYR ILE SER PHE LEU ARG SER GLU TYR GLU SEQRES 13 A 364 LYS TYR GLU HIS ASN ILE LEU LYS LEU VAL ASN ASP LYS SEQRES 14 A 364 LEU ASN TYR PRO VAL PHE VAL LYS PRO ALA ASN LEU GLY SEQRES 15 A 364 SER SER VAL GLY ILE SER LYS CYS ASN ASN GLU ALA GLU SEQRES 16 A 364 LEU LYS GLU GLY ILE LYS GLU ALA PHE GLN PHE ASP ARG SEQRES 17 A 364 LYS LEU VAL ILE GLU GLN GLY VAL ASN ALA ARG GLU ILE SEQRES 18 A 364 GLU VAL ALA VAL LEU GLY ASN ASP TYR PRO GLU ALA THR SEQRES 19 A 364 TRP PRO GLY GLU VAL VAL LYS ASP VAL ALA PHE TYR ASP SEQRES 20 A 364 TYR LYS SER LYS TYR LYS ASP GLY LYS VAL GLN LEU LYS SEQRES 21 A 364 ILE PRO ALA ASP LEU ASP GLU ASP VAL GLN LEU THR LEU SEQRES 22 A 364 ARG ASN MET ALA LEU GLU ALA PHE LYS GLU THR ASP CYS SEQRES 23 A 364 SER GLY LEU VAL ARG ALA ASP PHE PHE VAL THR GLU ASP SEQRES 24 A 364 ASN GLN ILE TYR ILE ASN GLU THR ASN ALA MET PRO GLY SEQRES 25 A 364 PHE THR ALA PHE SER MET TYR PRO LYS LEU TRP GLU ASN SEQRES 26 A 364 MET GLY LEU SER TYR PRO GLU LEU ILE THR LYS LEU ILE SEQRES 27 A 364 GLU LEU ALA LYS GLU ARG HIS GLN ASP LYS GLN LYS ASN SEQRES 28 A 364 LYS TYR LYS ILE ASP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 364 MET THR LYS GLU ASN ILE CYS ILE VAL PHE GLY GLY LYS SEQRES 2 B 364 SER ALA GLU HIS GLU VAL SER ILE LEU THR ALA GLN ASN SEQRES 3 B 364 VAL LEU ASN ALA ILE ASP LYS ASP LYS TYR HIS VAL ASP SEQRES 4 B 364 ILE ILE TYR ILE THR ASN ASP GLY ASP TRP ARG LYS GLN SEQRES 5 B 364 ASN ASN ILE THR ALA GLU ILE LYS SER THR ASP GLU LEU SEQRES 6 B 364 HIS LEU GLU ASN GLY GLU ALA LEU GLU ILE SER GLN LEU SEQRES 7 B 364 LEU LYS GLU SER SER SER GLY GLN PRO TYR ASP ALA VAL SEQRES 8 B 364 PHE PRO LEU LEU HIS GLY PRO ASN GLY GLU ASP GLY THR SEQRES 9 B 364 ILE GLN GLY LEU PHE GLU VAL LEU ASP VAL PRO TYR VAL SEQRES 10 B 364 GLY ASN GLY VAL LEU SER ALA ALA SER SER MET ASP LYS SEQRES 11 B 364 LEU VAL MET LYS GLN LEU PHE GLU HIS ARG GLY LEU PRO SEQRES 12 B 364 GLN LEU PRO TYR ILE SER PHE LEU ARG SER GLU TYR GLU SEQRES 13 B 364 LYS TYR GLU HIS ASN ILE LEU LYS LEU VAL ASN ASP LYS SEQRES 14 B 364 LEU ASN TYR PRO VAL PHE VAL LYS PRO ALA ASN LEU GLY SEQRES 15 B 364 SER SER VAL GLY ILE SER LYS CYS ASN ASN GLU ALA GLU SEQRES 16 B 364 LEU LYS GLU GLY ILE LYS GLU ALA PHE GLN PHE ASP ARG SEQRES 17 B 364 LYS LEU VAL ILE GLU GLN GLY VAL ASN ALA ARG GLU ILE SEQRES 18 B 364 GLU VAL ALA VAL LEU GLY ASN ASP TYR PRO GLU ALA THR SEQRES 19 B 364 TRP PRO GLY GLU VAL VAL LYS ASP VAL ALA PHE TYR ASP SEQRES 20 B 364 TYR LYS SER LYS TYR LYS ASP GLY LYS VAL GLN LEU LYS SEQRES 21 B 364 ILE PRO ALA ASP LEU ASP GLU ASP VAL GLN LEU THR LEU SEQRES 22 B 364 ARG ASN MET ALA LEU GLU ALA PHE LYS GLU THR ASP CYS SEQRES 23 B 364 SER GLY LEU VAL ARG ALA ASP PHE PHE VAL THR GLU ASP SEQRES 24 B 364 ASN GLN ILE TYR ILE ASN GLU THR ASN ALA MET PRO GLY SEQRES 25 B 364 PHE THR ALA PHE SER MET TYR PRO LYS LEU TRP GLU ASN SEQRES 26 B 364 MET GLY LEU SER TYR PRO GLU LEU ILE THR LYS LEU ILE SEQRES 27 B 364 GLU LEU ALA LYS GLU ARG HIS GLN ASP LYS GLN LYS ASN SEQRES 28 B 364 LYS TYR LYS ILE ASP LEU GLU HIS HIS HIS HIS HIS HIS HET ANP A 400 31 HET SO4 A 401 5 HET CL A 402 1 HET ANP B 400 31 HET SO4 B 401 5 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 CL CL 1- FORMUL 8 HOH *272(H2 O) HELIX 1 1 GLU A 16 ILE A 31 1 16 HELIX 2 2 SER A 61 HIS A 66 1 6 HELIX 3 3 GLU A 74 GLU A 81 1 8 HELIX 4 4 GLY A 103 ASP A 113 1 11 HELIX 5 5 GLY A 120 SER A 127 1 8 HELIX 6 6 ASP A 129 GLY A 141 1 13 HELIX 7 7 ARG A 152 LEU A 170 1 19 HELIX 8 8 ASN A 192 PHE A 204 1 13 HELIX 9 9 ASP A 266 THR A 284 1 19 HELIX 10 10 SER A 317 ASN A 325 1 9 HELIX 11 11 SER A 329 ASN A 351 1 23 HELIX 12 12 GLU B 16 ASN B 29 1 14 HELIX 13 13 SER B 61 HIS B 66 5 6 HELIX 14 14 GLU B 74 LYS B 80 1 7 HELIX 15 15 GLY B 103 LEU B 112 1 10 HELIX 16 16 GLY B 120 ASP B 129 1 10 HELIX 17 17 ASP B 129 GLY B 141 1 13 HELIX 18 18 ARG B 152 LEU B 170 1 19 HELIX 19 19 ASN B 192 ASP B 207 1 16 HELIX 20 20 ASP B 266 THR B 284 1 19 HELIX 21 21 SER B 317 ASN B 325 1 9 HELIX 22 22 SER B 329 GLU B 358 1 30 SHEET 1 A 4 TRP A 49 GLN A 52 0 SHEET 2 A 4 TYR A 36 ILE A 43 -1 N TYR A 42 O ARG A 50 SHEET 3 A 4 GLU A 4 GLY A 11 1 N ILE A 8 O ILE A 41 SHEET 4 A 4 ALA A 90 PRO A 93 1 O PHE A 92 N CYS A 7 SHEET 1 B 4 TYR A 147 LEU A 151 0 SHEET 2 B 4 LYS A 209 GLN A 214 -1 O ILE A 212 N ILE A 148 SHEET 3 B 4 VAL A 174 PRO A 178 -1 N PHE A 175 O GLU A 213 SHEET 4 B 4 SER A 188 CYS A 190 -1 O CYS A 190 N VAL A 174 SHEET 1 C 4 GLU A 232 ALA A 233 0 SHEET 2 C 4 ARG A 219 GLY A 227 -1 N LEU A 226 O GLU A 232 SHEET 3 C 4 GLY A 237 VAL A 239 -1 O GLY A 237 N GLU A 222 SHEET 4 C 4 LEU A 259 LYS A 260 -1 O LYS A 260 N GLU A 238 SHEET 1 D 4 GLU A 232 ALA A 233 0 SHEET 2 D 4 ARG A 219 GLY A 227 -1 N LEU A 226 O GLU A 232 SHEET 3 D 4 GLY A 288 VAL A 296 -1 O PHE A 294 N ILE A 221 SHEET 4 D 4 ILE A 302 ASN A 308 -1 O ASN A 305 N ASP A 293 SHEET 1 E 4 TRP B 49 GLN B 52 0 SHEET 2 E 4 TYR B 36 ILE B 43 -1 N TYR B 42 O ARG B 50 SHEET 3 E 4 GLU B 4 GLY B 11 1 N GLU B 4 O HIS B 37 SHEET 4 E 4 ALA B 90 PRO B 93 1 O PHE B 92 N CYS B 7 SHEET 1 F 4 TYR B 147 LEU B 151 0 SHEET 2 F 4 LYS B 209 GLN B 214 -1 O ILE B 212 N ILE B 148 SHEET 3 F 4 VAL B 174 PRO B 178 -1 N LYS B 177 O VAL B 211 SHEET 4 F 4 SER B 188 CYS B 190 -1 O CYS B 190 N VAL B 174 SHEET 1 G 4 GLU B 232 ALA B 233 0 SHEET 2 G 4 ARG B 219 GLY B 227 -1 N LEU B 226 O GLU B 232 SHEET 3 G 4 GLY B 237 VAL B 239 -1 O GLY B 237 N GLU B 222 SHEET 4 G 4 LEU B 259 LYS B 260 -1 O LYS B 260 N GLU B 238 SHEET 1 H 4 GLU B 232 ALA B 233 0 SHEET 2 H 4 ARG B 219 GLY B 227 -1 N LEU B 226 O GLU B 232 SHEET 3 H 4 GLY B 288 VAL B 296 -1 O PHE B 294 N ILE B 221 SHEET 4 H 4 ILE B 302 ASN B 308 -1 O GLU B 306 N ASP B 293 CISPEP 1 TYR A 172 PRO A 173 0 -2.21 CISPEP 2 ILE A 261 PRO A 262 0 -3.19 CISPEP 3 TYR B 172 PRO B 173 0 2.93 CISPEP 4 ILE B 261 PRO B 262 0 -2.53 SITE 1 AC1 17 LEU A 145 PHE A 175 LYS A 177 SER A 183 SITE 2 AC1 17 SER A 184 ILE A 187 GLU A 213 GLN A 214 SITE 3 AC1 17 GLY A 215 VAL A 216 GLU A 220 PHE A 295 SITE 4 AC1 17 ASN A 305 GLU A 306 HOH A 371 SO4 A 401 SITE 5 AC1 17 HOH A 418 SITE 1 AC2 6 ARG A 291 ASN A 308 PRO A 311 GLY A 312 SITE 2 AC2 6 HOH A 370 ANP A 400 SITE 1 AC3 3 ASN A 228 ASP A 229 TYR A 230 SITE 1 AC4 12 LEU B 145 PHE B 175 LYS B 177 ILE B 187 SITE 2 AC4 12 GLU B 213 GLN B 214 GLY B 215 VAL B 216 SITE 3 AC4 12 GLU B 220 ASN B 305 GLU B 306 HOH B 367 SITE 1 AC5 6 ARG B 291 ASN B 308 PRO B 311 GLY B 312 SITE 2 AC5 6 HOH B 424 HOH B 496 CRYST1 84.374 87.271 91.789 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011852 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010895 0.00000