HEADER TRANSFERASE 28-MAY-10 3N8T TITLE NATIVE STRUCTURE OF TK1436, A GH57 BRANCHING ENZYME FROM TITLE 2 HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS KODAKARAENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-AMYLASE, GH57 FAMILY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-562; COMPND 5 EC: 2.4.1.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_COMMON: THERMOCOCCUS KODAKARAENSIS; SOURCE 4 ORGANISM_TAXID: 311400; SOURCE 5 STRAIN: KOD1; SOURCE 6 GENE: TK1436; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21A(+) KEYWDS GH57 FAMILY MEMBER, BRANCHING ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.R.SANTOS,C.C.C.TONOLI,D.M.TRINDADE,C.BETZEL,H.TAKATA,T.KURIKI, AUTHOR 2 T.KANAI,T.IMANAKA,R.K.ARNI,M.T.MURAKAMI REVDAT 3 06-SEP-23 3N8T 1 REMARK REVDAT 2 26-JAN-11 3N8T 1 JRNL REVDAT 1 27-OCT-10 3N8T 0 JRNL AUTH C.R.SANTOS,C.C.TONOLI,D.M.TRINDADE,C.BETZEL,H.TAKATA, JRNL AUTH 2 T.KURIKI,T.KANAI,T.IMANAKA,R.K.ARNI,M.T.MURAKAMI JRNL TITL STRUCTURAL BASIS FOR BRANCHING-ENZYME ACTIVITY OF GLYCOSIDE JRNL TITL 2 HYDROLASE FAMILY 57: STRUCTURE AND STABILITY STUDIES OF A JRNL TITL 3 NOVEL BRANCHING ENZYME FROM THE HYPERTHERMOPHILIC ARCHAEON JRNL TITL 4 THERMOCOCCUS KODAKARAENSIS KOD1. JRNL REF PROTEINS V. 79 547 2011 JRNL REFN ISSN 0887-3585 JRNL PMID 21104698 JRNL DOI 10.1002/PROT.22902 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 28226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1510 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2012 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.930 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4740 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6409 ; 1.806 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 549 ; 6.812 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 248 ;36.099 ;23.145 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 810 ;17.439 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;20.428 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 645 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3677 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2735 ; 1.113 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4412 ; 2.118 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2005 ; 3.268 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1997 ; 5.337 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3N8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059524. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4586 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29790 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 68.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1UFA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE (PH 5.5), 15% REMARK 280 (W/V) PEG 8000, 10% (V/V) PEG 400 AND 200 MM SODIUM CHLORIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.21200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.11100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.47650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.11100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.21200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.47650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 551 REMARK 465 LYS A 552 REMARK 465 GLU A 553 REMARK 465 GLU A 554 REMARK 465 THR A 555 REMARK 465 GLU A 556 REMARK 465 GLU A 557 REMARK 465 LYS A 558 REMARK 465 PRO A 559 REMARK 465 LYS A 560 REMARK 465 VAL A 561 REMARK 465 LEU A 562 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 519 O HOH A 754 2.05 REMARK 500 O HOH A 733 O HOH A 746 2.10 REMARK 500 NZ LYS A 207 OE1 GLU A 210 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 519 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 36 -50.83 -122.93 REMARK 500 THR A 140 -169.76 -101.60 REMARK 500 PRO A 182 126.38 -32.39 REMARK 500 CYS A 184 19.32 45.98 REMARK 500 ARG A 198 141.02 -30.63 REMARK 500 LYS A 291 -76.13 83.89 REMARK 500 THR A 300 -65.22 75.03 REMARK 500 GLU A 303 -80.60 72.25 REMARK 500 VAL A 304 115.05 44.14 REMARK 500 HIS A 360 -71.81 -94.27 REMARK 500 ASN A 410 9.13 58.97 REMARK 500 ASP A 412 -156.75 -127.14 REMARK 500 ARG A 445 -74.38 -45.13 REMARK 500 ALA A 477 61.41 -159.54 REMARK 500 PHE A 523 107.69 78.33 REMARK 500 GLU A 544 108.92 -58.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 302 GLU A 303 140.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 563 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 564 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N92 RELATED DB: PDB REMARK 900 RELATED ID: 3N98 RELATED DB: PDB DBREF 3N8T A 1 562 UNP Q5JDJ7 Q5JDJ7_PYRKO 1 562 SEQRES 1 A 562 MET LYS GLY TYR LEU THR PHE VAL LEU HIS THR HIS ILE SEQRES 2 A 562 PRO TYR VAL ARG LYS HIS GLY LYS TRP PRO PHE GLY GLU SEQRES 3 A 562 GLU TRP VAL PHE GLU ALA ILE SER GLU THR TYR ILE PRO SEQRES 4 A 562 LEU LEU MET GLU PHE GLU ARG LEU ARG ASP SER GLY VAL SEQRES 5 A 562 LYS PHE GLY ILE VAL ILE ASN VAL THR PRO VAL LEU ALA SEQRES 6 A 562 GLU GLN LEU THR ASP GLU TYR MET LYS LYS ALA PHE GLU SEQRES 7 A 562 GLU TYR MET GLU ARG LYS LEU LYS ALA MET GLU GLU ASP SEQRES 8 A 562 LEU LYS SER GLY LYS TYR ASP GLU LYS ALA VAL SER TYR SEQRES 9 A 562 MET LEU ASN TYR PHE ARG LYS VAL TYR ASP TYR TRP LYS SEQRES 10 A 562 ALA ILE ASN GLY ASP ILE ILE GLY LYS LEU ARG GLU LEU SEQRES 11 A 562 GLN ASP GLN GLY TYR VAL GLU VAL ILE THR SER ALA ALA SEQRES 12 A 562 THR HIS GLY TYR LEU PRO LEU LEU GLY ARG ASP GLU ALA SEQRES 13 A 562 ILE ARG ALA GLN ILE ALA ASN GLY VAL ALA THR TYR GLU SEQRES 14 A 562 LYS HIS PHE GLY MET LYS PRO LYS GLY ILE TRP LEU PRO SEQRES 15 A 562 GLU CYS ALA TYR ARG PRO ALA GLY GLU TRP GLU LEU PRO SEQRES 16 A 562 GLY GLY ARG LYS VAL LYS ARG GLN GLY ILE GLU LYS PHE SEQRES 17 A 562 LEU GLU GLU PHE GLY LEU ARG TYR PHE PHE VAL GLU SER SEQRES 18 A 562 ARG LEU ILE ASP GLU GLY PRO ALA SER ASN VAL TYR GLY SEQRES 19 A 562 GLU VAL LEU ILE ALA ASP THR GLU LYS THR THR LEU ARG SEQRES 20 A 562 PRO TYR TRP ILE LYS GLY SER ASN VAL ALA VAL PHE ALA SEQRES 21 A 562 ARG ASN ARG GLU THR GLY HIS GLN VAL TRP SER ALA HIS SEQRES 22 A 562 TYR GLY TYR PRO GLY ASP PHE TRP TYR ARG GLU PHE HIS SEQRES 23 A 562 LYS LYS ALA PRO LYS SER GLY GLY GLN TYR TRP ARG ILE SEQRES 24 A 562 THR SER LYS GLU VAL GLY LEU GLY GLU LYS GLU PHE TYR SEQRES 25 A 562 ASP PRO ASP LYS ALA MET GLU ARG VAL GLU GLU HIS ALA SEQRES 26 A 562 ARG HIS PHE VAL SER LEU VAL GLU ARG LEU LEU ARG GLU SEQRES 27 A 562 HIS GLU GLU LYS PHE GLY GLU LYS GLY ILE ILE VAL ALA SEQRES 28 A 562 PRO TYR ASP THR GLU LEU PHE GLY HIS TRP TRP PHE GLU SEQRES 29 A 562 GLY VAL LYS TRP LEU GLY ARG VAL LEU GLU LEU LEU TYR SEQRES 30 A 562 GLN ARG GLY VAL GLU THR PRO THR LEU SER ARG PHE LEU SEQRES 31 A 562 GLU GLU TYR SER GLY GLU LYS HIS GLU ILE GLU LEU PRO SEQRES 32 A 562 GLU GLY SER TRP GLY ALA ASN SER ASP HIS SER THR TRP SEQRES 33 A 562 TRP ASN GLU GLU THR GLU TRP THR TRP PRO HIS ILE TYR SEQRES 34 A 562 ARG ALA GLU ASP ARG MET VAL ALA ILE VAL SER ARG PHE SEQRES 35 A 562 ARG GLY ARG ASP GLU LEU THR ASN ARG VAL ILE GLU GLN SEQRES 36 A 562 LEU ALA ARG GLU LEU LEU ILE LEU GLU ALA SER ASP TRP SEQRES 37 A 562 GLN PHE LEU ILE THR THR GLY GLN ALA LYS GLU TYR ALA SEQRES 38 A 562 LYS ARG ARG VAL LEU ILE HIS SER ARG ASP PHE HIS ARG SEQRES 39 A 562 LEU ALA ASN GLU LEU VAL ARG TYR VAL LYS ILE GLY GLU SEQRES 40 A 562 PHE ASP VAL LYS LEU LEU GLU GLU LEU GLU GLU ARG ASP SEQRES 41 A 562 ASN PRO PHE ARG PRO VAL VAL VAL GLY PRO TYR VAL SER SEQRES 42 A 562 GLU ASN PRO PRO GLU LEU GLU GLU TYR VAL GLU PRO PRO SEQRES 43 A 562 GLU VAL PRO PRO GLU LYS GLU GLU THR GLU GLU LYS PRO SEQRES 44 A 562 LYS VAL LEU HET PEG A 563 7 HET PG4 A 564 13 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 2 PEG C4 H10 O3 FORMUL 3 PG4 C8 H18 O5 FORMUL 4 HOH *225(H2 O) HELIX 1 1 GLY A 25 THR A 36 1 12 HELIX 2 2 THR A 36 SER A 50 1 15 HELIX 3 3 THR A 61 THR A 69 1 9 HELIX 4 4 ASP A 70 GLY A 95 1 26 HELIX 5 5 ASP A 98 ILE A 119 1 22 HELIX 6 6 ASP A 122 GLN A 133 1 12 HELIX 7 7 TYR A 147 LEU A 151 5 5 HELIX 8 8 ARG A 153 GLY A 173 1 21 HELIX 9 9 LEU A 181 ALA A 185 5 5 HELIX 10 10 GLY A 204 PHE A 212 1 9 HELIX 11 11 SER A 221 GLU A 226 1 6 HELIX 12 12 ASN A 262 SER A 271 1 10 HELIX 13 13 GLY A 275 ASP A 279 5 5 HELIX 14 14 ASP A 313 GLY A 344 1 32 HELIX 15 15 GLU A 356 PHE A 358 5 3 HELIX 16 16 GLU A 364 ARG A 379 1 16 HELIX 17 17 THR A 385 GLU A 392 1 8 HELIX 18 18 GLY A 408 ASP A 412 5 5 HELIX 19 19 TRP A 423 ARG A 443 1 21 HELIX 20 20 ASP A 446 ALA A 465 1 20 HELIX 21 21 ALA A 465 THR A 474 1 10 HELIX 22 22 ALA A 477 GLY A 506 1 30 HELIX 23 23 ASP A 509 ASP A 520 1 12 HELIX 24 24 VAL A 528 VAL A 532 5 5 SHEET 1 A 5 ILE A 179 TRP A 180 0 SHEET 2 A 5 VAL A 136 SER A 141 1 N THR A 140 O TRP A 180 SHEET 3 A 5 ILE A 56 VAL A 60 1 N ILE A 58 O GLU A 137 SHEET 4 A 5 TYR A 4 THR A 11 1 N PHE A 7 O VAL A 57 SHEET 5 A 5 ILE A 348 ASP A 354 1 O TYR A 353 N VAL A 8 SHEET 1 B 2 GLY A 190 GLU A 193 0 SHEET 2 B 2 LYS A 199 ARG A 202 -1 O VAL A 200 N TRP A 192 SHEET 1 C 4 TYR A 216 VAL A 219 0 SHEET 2 C 4 ALA A 257 ALA A 260 1 O PHE A 259 N VAL A 219 SHEET 3 C 4 TYR A 249 ILE A 251 -1 N TYR A 249 O VAL A 258 SHEET 4 C 4 GLU A 399 ILE A 400 1 O ILE A 400 N TRP A 250 CISPEP 1 TRP A 22 PRO A 23 0 -6.74 CISPEP 2 ARG A 524 PRO A 525 0 -2.87 SITE 1 AC1 5 PRO A 426 ARG A 430 PRO A 546 HOH A 646 SITE 2 AC1 5 HOH A 711 SITE 1 AC2 11 TYR A 274 GLY A 275 GLY A 278 ASP A 279 SITE 2 AC2 11 ARG A 320 GLU A 323 HIS A 324 HIS A 327 SITE 3 AC2 11 ILE A 505 GLU A 507 HOH A 656 CRYST1 70.424 78.953 134.222 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012666 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007450 0.00000