HEADER TRANSFERASE 31-MAY-10 3N9W TITLE CRYSTAL STRUCTURE OF 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE TITLE 2 CYTIDYLYLTRANSFERASE (ISPD) IN COMPLEX WITH 1,2-PROPANEDIOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL SYNTHASE, MEP COMPND 5 CYTIDYLYLTRANSFERASE, MCT, CDP-ME SYNTHASE; COMPND 6 EC: 2.7.7.60 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12 KEYWDS YGBP, CYTIDYLYLTRANSFERASE, DEOXYXYLULOSE-5-PHOSPHATE PATHWAY (DXP), KEYWDS 2 ISOPRENOID BIOSYNTHESIS, 1, 2-PROPANEDIOL, FBLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.BEHNEN,A.HEINE,G.KLEBE REVDAT 6 06-SEP-23 3N9W 1 REMARK REVDAT 5 17-JUL-19 3N9W 1 REMARK REVDAT 4 08-NOV-17 3N9W 1 REMARK REVDAT 3 15-FEB-12 3N9W 1 JRNL REVDAT 2 18-JAN-12 3N9W 1 JRNL VERSN REVDAT 1 25-MAY-11 3N9W 0 JRNL AUTH J.BEHNEN,H.KOSTER,G.NEUDERT,T.CRAAN,A.HEINE,G.KLEBE JRNL TITL EXPERIMENTAL AND COMPUTATIONAL ACTIVE SITE MAPPING AS A JRNL TITL 2 STARTING POINT TO FRAGMENT-BASED LEAD DISCOVERY. JRNL REF CHEMMEDCHEM V. 7 248 2012 JRNL REFN ISSN 1860-7179 JRNL PMID 22213702 JRNL DOI 10.1002/CMDC.201100490 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.213 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 32991 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.205 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 28272 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3061 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 3177.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 3086.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 3 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 12823 REMARK 3 NUMBER OF RESTRAINTS : 16547 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 ANGLE DISTANCES (A) : 0.024 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.092 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.025 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.034 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.041 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.012 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.057 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC SCALING APPLIED BY THE REMARK 3 METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56 REMARK 4 REMARK 4 3N9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059563. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32991 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1VGT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% 1,2-PROPANEDIOL, 20% PEG400, 0.1M REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.62000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.82500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.82500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.62000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 HIS A 5 REMARK 465 GLY A 16 REMARK 465 PHE A 17 REMARK 465 GLY A 18 REMARK 465 ARG A 19 REMARK 465 ARG A 20 REMARK 465 MET A 21 REMARK 465 GLN A 22 REMARK 465 THR A 23 REMARK 465 GLU A 24 REMARK 465 CYS A 25 REMARK 465 PRO A 26 REMARK 465 LYS A 27 REMARK 465 GLN A 28 REMARK 465 TYR A 29 REMARK 465 LEU A 30 REMARK 465 SER A 31 REMARK 465 ILE A 32 REMARK 465 GLY A 33 REMARK 465 SER A 59 REMARK 465 PRO A 60 REMARK 465 GLY A 61 REMARK 465 ASP A 62 REMARK 465 SER A 63 REMARK 465 ARG A 64 REMARK 465 PHE A 65 REMARK 465 ALA A 66 REMARK 465 GLN A 67 REMARK 465 LEU A 68 REMARK 465 ARG A 229 REMARK 465 THR A 230 REMARK 465 ILE A 231 REMARK 465 HIS A 232 REMARK 465 GLN A 233 REMARK 465 GLU A 234 REMARK 465 ASN A 235 REMARK 465 THR A 236 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 HIS B 5 REMARK 465 PHE B 17 REMARK 465 GLY B 18 REMARK 465 ARG B 19 REMARK 465 ARG B 20 REMARK 465 MET B 21 REMARK 465 GLN B 22 REMARK 465 THR B 23 REMARK 465 GLU B 24 REMARK 465 CYS B 25 REMARK 465 PRO B 26 REMARK 465 THR B 236 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 34 CG OD1 ND2 REMARK 470 GLN A 35 CG CD OE1 NE2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 ASN A 72 CG OD1 ND2 REMARK 470 ASP A 83 CG OD1 OD2 REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 ASP A 87 CG OD1 OD2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ASP A 98 CG OD1 OD2 REMARK 470 ASP A 115 CG OD1 OD2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 ASN A 158 CG OD1 ND2 REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 THR A 228 OG1 CG2 REMARK 470 GLN B 67 CG CD OE1 NE2 REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 ASP B 98 CG OD1 OD2 REMARK 470 ARG B 128 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 157 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 158 CG OD1 ND2 REMARK 470 ARG B 171 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 172 CG CD OE1 OE2 REMARK 470 ARG B 180 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 233 CG CD OE1 NE2 REMARK 470 ASN B 235 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 50 CD - NE - CZ ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG A 50 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 85 CD - NE - CZ ANGL. DEV. = 21.5 DEGREES REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 106 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 119 CD - NE - CZ ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG A 119 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 119 NE - CZ - NH2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 128 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 50 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 50 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 53 CD - NE - CZ ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG B 53 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 85 CD - NE - CZ ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG B 85 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 85 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 106 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG B 119 CD - NE - CZ ANGL. DEV. = 19.6 DEGREES REMARK 500 ARG B 119 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 143 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 208 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 216 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 149 59.95 -92.11 REMARK 500 LEU A 164 -163.51 -110.61 REMARK 500 THR A 189 -70.05 -106.37 REMARK 500 LEU B 164 -168.58 -107.74 REMARK 500 THR B 189 -70.69 -112.60 REMARK 500 GLU B 234 81.48 -69.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGR B 3001 DBREF 3N9W A 2 236 UNP Q46893 ISPD_ECOLI 2 236 DBREF 3N9W B 2 236 UNP Q46893 ISPD_ECOLI 2 236 SEQRES 1 A 235 ALA THR THR HIS LEU ASP VAL CYS ALA VAL VAL PRO ALA SEQRES 2 A 235 ALA GLY PHE GLY ARG ARG MET GLN THR GLU CYS PRO LYS SEQRES 3 A 235 GLN TYR LEU SER ILE GLY ASN GLN THR ILE LEU GLU HIS SEQRES 4 A 235 SER VAL HIS ALA LEU LEU ALA HIS PRO ARG VAL LYS ARG SEQRES 5 A 235 VAL VAL ILE ALA ILE SER PRO GLY ASP SER ARG PHE ALA SEQRES 6 A 235 GLN LEU PRO LEU ALA ASN HIS PRO GLN ILE THR VAL VAL SEQRES 7 A 235 ASP GLY GLY ASP GLU ARG ALA ASP SER VAL LEU ALA GLY SEQRES 8 A 235 LEU LYS ALA ALA GLY ASP ALA GLN TRP VAL LEU VAL HIS SEQRES 9 A 235 ASP ALA ALA ARG PRO CYS LEU HIS GLN ASP ASP LEU ALA SEQRES 10 A 235 ARG LEU LEU ALA LEU SER GLU THR SER ARG THR GLY GLY SEQRES 11 A 235 ILE LEU ALA ALA PRO VAL ARG ASP THR MET LYS ARG ALA SEQRES 12 A 235 GLU PRO GLY LYS ASN ALA ILE ALA HIS THR VAL ASP ARG SEQRES 13 A 235 ASN GLY LEU TRP HIS ALA LEU THR PRO GLN PHE PHE PRO SEQRES 14 A 235 ARG GLU LEU LEU HIS ASP CYS LEU THR ARG ALA LEU ASN SEQRES 15 A 235 GLU GLY ALA THR ILE THR ASP GLU ALA SER ALA LEU GLU SEQRES 16 A 235 TYR CYS GLY PHE HIS PRO GLN LEU VAL GLU GLY ARG ALA SEQRES 17 A 235 ASP ASN ILE LYS VAL THR ARG PRO GLU ASP LEU ALA LEU SEQRES 18 A 235 ALA GLU PHE TYR LEU THR ARG THR ILE HIS GLN GLU ASN SEQRES 19 A 235 THR SEQRES 1 B 235 ALA THR THR HIS LEU ASP VAL CYS ALA VAL VAL PRO ALA SEQRES 2 B 235 ALA GLY PHE GLY ARG ARG MET GLN THR GLU CYS PRO LYS SEQRES 3 B 235 GLN TYR LEU SER ILE GLY ASN GLN THR ILE LEU GLU HIS SEQRES 4 B 235 SER VAL HIS ALA LEU LEU ALA HIS PRO ARG VAL LYS ARG SEQRES 5 B 235 VAL VAL ILE ALA ILE SER PRO GLY ASP SER ARG PHE ALA SEQRES 6 B 235 GLN LEU PRO LEU ALA ASN HIS PRO GLN ILE THR VAL VAL SEQRES 7 B 235 ASP GLY GLY ASP GLU ARG ALA ASP SER VAL LEU ALA GLY SEQRES 8 B 235 LEU LYS ALA ALA GLY ASP ALA GLN TRP VAL LEU VAL HIS SEQRES 9 B 235 ASP ALA ALA ARG PRO CYS LEU HIS GLN ASP ASP LEU ALA SEQRES 10 B 235 ARG LEU LEU ALA LEU SER GLU THR SER ARG THR GLY GLY SEQRES 11 B 235 ILE LEU ALA ALA PRO VAL ARG ASP THR MET LYS ARG ALA SEQRES 12 B 235 GLU PRO GLY LYS ASN ALA ILE ALA HIS THR VAL ASP ARG SEQRES 13 B 235 ASN GLY LEU TRP HIS ALA LEU THR PRO GLN PHE PHE PRO SEQRES 14 B 235 ARG GLU LEU LEU HIS ASP CYS LEU THR ARG ALA LEU ASN SEQRES 15 B 235 GLU GLY ALA THR ILE THR ASP GLU ALA SER ALA LEU GLU SEQRES 16 B 235 TYR CYS GLY PHE HIS PRO GLN LEU VAL GLU GLY ARG ALA SEQRES 17 B 235 ASP ASN ILE LYS VAL THR ARG PRO GLU ASP LEU ALA LEU SEQRES 18 B 235 ALA GLU PHE TYR LEU THR ARG THR ILE HIS GLN GLU ASN SEQRES 19 B 235 THR HET PGO A3002 5 HET PGO A3003 5 HET PGR B3001 5 HETNAM PGO S-1,2-PROPANEDIOL HETNAM PGR R-1,2-PROPANEDIOL FORMUL 3 PGO 2(C3 H8 O2) FORMUL 5 PGR C3 H8 O2 FORMUL 6 HOH *105(H2 O) HELIX 1 1 ASN A 34 ALA A 47 1 14 HELIX 2 2 PRO A 69 HIS A 73 5 5 HELIX 3 3 GLU A 84 LYS A 94 1 11 HELIX 4 4 HIS A 113 ALA A 122 1 10 HELIX 5 5 LEU A 123 THR A 126 5 4 HELIX 6 6 ARG A 171 GLU A 184 1 14 HELIX 7 7 ASP A 190 GLY A 199 1 10 HELIX 8 8 ARG A 216 GLU A 218 5 3 HELIX 9 9 ASP A 219 THR A 228 1 10 HELIX 10 10 ILE B 37 LEU B 46 1 10 HELIX 11 11 ARG B 64 HIS B 73 5 10 HELIX 12 12 GLU B 84 LYS B 94 1 11 HELIX 13 13 HIS B 113 ALA B 122 1 10 HELIX 14 14 ALA B 122 SER B 127 1 6 HELIX 15 15 ARG B 171 GLU B 184 1 14 HELIX 16 16 GLU B 191 CYS B 198 1 8 HELIX 17 17 GLU B 218 GLU B 234 1 17 SHEET 1 A 7 ILE A 76 ASP A 80 0 SHEET 2 A 7 VAL A 51 ILE A 58 1 N ILE A 56 O THR A 77 SHEET 3 A 7 VAL A 8 PRO A 13 1 N VAL A 12 O VAL A 55 SHEET 4 A 7 TRP A 101 VAL A 104 1 O LEU A 103 N VAL A 11 SHEET 5 A 7 LEU A 160 PRO A 170 -1 O GLN A 167 N VAL A 104 SHEET 6 A 7 GLY A 131 PRO A 136 -1 N ALA A 135 O HIS A 162 SHEET 7 A 7 GLN A 203 GLU A 206 1 O VAL A 205 N ILE A 132 SHEET 1 B 7 ILE A 76 ASP A 80 0 SHEET 2 B 7 VAL A 51 ILE A 58 1 N ILE A 56 O THR A 77 SHEET 3 B 7 VAL A 8 PRO A 13 1 N VAL A 12 O VAL A 55 SHEET 4 B 7 TRP A 101 VAL A 104 1 O LEU A 103 N VAL A 11 SHEET 5 B 7 LEU A 160 PRO A 170 -1 O GLN A 167 N VAL A 104 SHEET 6 B 7 MET B 141 ALA B 144 -1 O LYS B 142 N TRP A 161 SHEET 7 B 7 ILE B 151 THR B 154 -1 O ALA B 152 N ARG B 143 SHEET 1 C 7 ILE A 151 VAL A 155 0 SHEET 2 C 7 MET A 141 ALA A 144 -1 N MET A 141 O VAL A 155 SHEET 3 C 7 LEU B 160 PRO B 170 -1 O TRP B 161 N LYS A 142 SHEET 4 C 7 TRP B 101 VAL B 104 -1 N VAL B 102 O PHE B 169 SHEET 5 C 7 VAL B 8 ALA B 14 1 N VAL B 11 O LEU B 103 SHEET 6 C 7 VAL B 51 ILE B 58 1 O VAL B 55 N ALA B 10 SHEET 7 C 7 ILE B 76 ASP B 80 1 O THR B 77 N ILE B 56 SHEET 1 D 5 ILE A 151 VAL A 155 0 SHEET 2 D 5 MET A 141 ALA A 144 -1 N MET A 141 O VAL A 155 SHEET 3 D 5 LEU B 160 PRO B 170 -1 O TRP B 161 N LYS A 142 SHEET 4 D 5 GLY B 131 PRO B 136 -1 N ALA B 135 O HIS B 162 SHEET 5 D 5 GLN B 203 GLU B 206 1 O VAL B 205 N ILE B 132 SHEET 1 E 2 SER B 31 ILE B 32 0 SHEET 2 E 2 GLN B 35 THR B 36 -1 O GLN B 35 N ILE B 32 CISPEP 1 THR A 165 PRO A 166 0 0.36 CISPEP 2 THR B 165 PRO B 166 0 4.09 SITE 1 AC1 5 ASP A 106 ARG A 109 ALA A 163 THR A 165 SITE 2 AC1 5 ASP A 190 SITE 1 AC2 4 ALA A 135 ARG A 138 HIS A 162 ALA A 209 SITE 1 AC3 6 ASP A 139 THR A 140 ASP B 106 ARG B 109 SITE 2 AC3 6 ALA B 163 LYS B 213 CRYST1 41.240 81.200 133.650 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024248 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007482 0.00000