HEADER PROTEIN BINDING 01-JUN-10 3NA3 OBSLTE 12-NOV-14 3NA3 4P7A TITLE MUTL PROTEIN HOMOLOG 1 ISOFORM 1 FROM HOMO SAPIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA MISMATCH REPAIR PROTEIN MLH1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-347; COMPND 5 SYNONYM: MUTL PROTEIN HOMOLOG 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: COCA2, MLH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS DNA MISMATCH REPAIR, MLH1, MUTL PROTEIN HOMOLOG 1, DNA DAMAGE, DNA KEYWDS 2 REPAIR, STRUCTURAL GENOMICS CONSORTIUM, SGC, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR R.LAM,H.ZENG,P.LOPPNAU,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,A.BOCHKAREV,J.MIN,H.WU,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 2 12-NOV-14 3NA3 1 OBSLTE VERSN REVDAT 1 04-AUG-10 3NA3 0 JRNL AUTH STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF HUMAN MLH1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 760 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1065 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2243 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.59000 REMARK 3 B12 (A**2) : 0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.385 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.283 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.222 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.459 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2306 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3134 ; 1.610 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 6.991 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;39.221 ;23.956 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 372 ;18.781 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;24.525 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 376 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1696 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1496 ; 0.783 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2388 ; 1.487 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 810 ; 2.338 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 746 ; 3.900 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7020 -22.2830 0.3700 REMARK 3 T TENSOR REMARK 3 T11: 0.0665 T22: 0.0703 REMARK 3 T33: 0.1681 T12: 0.0289 REMARK 3 T13: 0.0149 T23: -0.0473 REMARK 3 L TENSOR REMARK 3 L11: 0.8127 L22: 1.3743 REMARK 3 L33: 1.2040 L12: 0.1976 REMARK 3 L13: 0.5354 L23: -0.6782 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: 0.1299 S13: -0.1091 REMARK 3 S21: -0.0969 S22: -0.1026 S23: 0.0817 REMARK 3 S31: 0.0800 S32: 0.0433 S33: 0.0556 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB059570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : ROSENBAUM-ROCK HIGH- RESOLUTION REMARK 200 DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15169 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1B62 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 10% ISOPROPANOL, 0.1 M REMARK 280 HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.60067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.20133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.60067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.20133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 47.23400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -81.81169 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 LEU A 91 REMARK 465 ALA A 92 REMARK 465 SER A 93 REMARK 465 ILE A 94 REMARK 465 SER A 95 REMARK 465 THR A 96 REMARK 465 TYR A 97 REMARK 465 SER A 299 REMARK 465 PRO A 300 REMARK 465 GLN A 301 REMARK 465 ASN A 302 REMARK 465 VAL A 303 REMARK 465 ASP A 304 REMARK 465 VAL A 305 REMARK 465 ASN A 306 REMARK 465 VAL A 307 REMARK 465 HIS A 308 REMARK 465 PRO A 309 REMARK 465 THR A 310 REMARK 465 LYS A 311 REMARK 465 HIS A 312 REMARK 465 GLU A 313 REMARK 465 VAL A 314 REMARK 465 HIS A 315 REMARK 465 PHE A 316 REMARK 465 LEU A 317 REMARK 465 HIS A 318 REMARK 465 GLU A 319 REMARK 465 GLU A 320 REMARK 465 GLY A 336 REMARK 465 SER A 337 REMARK 465 ASN A 338 REMARK 465 SER A 339 REMARK 465 SER A 340 REMARK 465 ARG A 341 REMARK 465 MET A 342 REMARK 465 TYR A 343 REMARK 465 PHE A 344 REMARK 465 THR A 345 REMARK 465 GLN A 346 REMARK 465 THR A 347 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 26 CG CD OE1 NE2 REMARK 470 ASP A 121 CG OD1 OD2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 ARG A 226 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 LEU A 238 CG CD1 CD2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 TYR A 251 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 252 OG REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 ILE A 262 CG1 CG2 CD1 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 LEU A 284 CG CD1 CD2 REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 ASN A 287 CG OD1 ND2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 SER A 321 OG REMARK 470 ILE A 322 CG1 CG2 CD1 REMARK 470 LEU A 323 CG CD1 CD2 REMARK 470 ARG A 325 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 326 CG1 CG2 REMARK 470 GLN A 327 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 156 30.13 71.25 REMARK 500 ASN A 168 157.56 -49.50 REMARK 500 ALA A 188 -138.98 49.62 REMARK 500 CYS A 233 113.00 -164.99 REMARK 500 ASN A 248 175.83 -43.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 187 ALA A 188 137.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 500 DBREF 3NA3 A 1 347 UNP P40692 MLH1_HUMAN 1 347 SEQADV 3NA3 GLY A 0 UNP P40692 EXPRESSION TAG SEQRES 1 A 348 GLY MET SER PHE VAL ALA GLY VAL ILE ARG ARG LEU ASP SEQRES 2 A 348 GLU THR VAL VAL ASN ARG ILE ALA ALA GLY GLU VAL ILE SEQRES 3 A 348 GLN ARG PRO ALA ASN ALA ILE LYS GLU MET ILE GLU ASN SEQRES 4 A 348 CYS LEU ASP ALA LYS SER THR SER ILE GLN VAL ILE VAL SEQRES 5 A 348 LYS GLU GLY GLY LEU LYS LEU ILE GLN ILE GLN ASP ASN SEQRES 6 A 348 GLY THR GLY ILE ARG LYS GLU ASP LEU ASP ILE VAL CYS SEQRES 7 A 348 GLU ARG PHE THR THR SER LYS LEU GLN SER PHE GLU ASP SEQRES 8 A 348 LEU ALA SER ILE SER THR TYR GLY PHE ARG GLY GLU ALA SEQRES 9 A 348 LEU ALA SER ILE SER HIS VAL ALA HIS VAL THR ILE THR SEQRES 10 A 348 THR LYS THR ALA ASP GLY LYS CYS ALA TYR ARG ALA SER SEQRES 11 A 348 TYR SER ASP GLY LYS LEU LYS ALA PRO PRO LYS PRO CYS SEQRES 12 A 348 ALA GLY ASN GLN GLY THR GLN ILE THR VAL GLU ASP LEU SEQRES 13 A 348 PHE TYR ASN ILE ALA THR ARG ARG LYS ALA LEU LYS ASN SEQRES 14 A 348 PRO SER GLU GLU TYR GLY LYS ILE LEU GLU VAL VAL GLY SEQRES 15 A 348 ARG TYR SER VAL HIS ASN ALA GLY ILE SER PHE SER VAL SEQRES 16 A 348 LYS LYS GLN GLY GLU THR VAL ALA ASP VAL ARG THR LEU SEQRES 17 A 348 PRO ASN ALA SER THR VAL ASP ASN ILE ARG SER ILE PHE SEQRES 18 A 348 GLY ASN ALA VAL SER ARG GLU LEU ILE GLU ILE GLY CYS SEQRES 19 A 348 GLU ASP LYS THR LEU ALA PHE LYS MET ASN GLY TYR ILE SEQRES 20 A 348 SER ASN ALA ASN TYR SER VAL LYS LYS CYS ILE PHE LEU SEQRES 21 A 348 LEU PHE ILE ASN HIS ARG LEU VAL GLU SER THR SER LEU SEQRES 22 A 348 ARG LYS ALA ILE GLU THR VAL TYR ALA ALA TYR LEU PRO SEQRES 23 A 348 LYS ASN THR HIS PRO PHE LEU TYR LEU SER LEU GLU ILE SEQRES 24 A 348 SER PRO GLN ASN VAL ASP VAL ASN VAL HIS PRO THR LYS SEQRES 25 A 348 HIS GLU VAL HIS PHE LEU HIS GLU GLU SER ILE LEU GLU SEQRES 26 A 348 ARG VAL GLN GLN HIS ILE GLU SER LYS LEU LEU GLY SER SEQRES 27 A 348 ASN SER SER ARG MET TYR PHE THR GLN THR HET ATP A 500 31 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 HOH *15(H2 O) HELIX 1 1 ASP A 12 ILE A 25 1 14 HELIX 2 2 ARG A 27 ALA A 42 1 16 HELIX 3 3 ARG A 69 ILE A 75 5 7 HELIX 4 4 GLU A 102 VAL A 110 1 9 HELIX 5 5 ILE A 159 ALA A 165 1 7 HELIX 6 6 ASN A 168 ASN A 187 1 20 HELIX 7 7 SER A 211 GLY A 221 1 11 HELIX 8 8 GLY A 221 ARG A 226 1 6 HELIX 9 9 LYS A 236 ALA A 239 5 4 HELIX 10 10 SER A 271 ALA A 282 1 12 HELIX 11 11 LEU A 323 LEU A 335 1 13 SHEET 1 A 3 LYS A 134 LEU A 135 0 SHEET 2 A 3 ALA A 125 SER A 131 -1 N SER A 131 O LYS A 134 SHEET 3 A 3 LYS A 140 CYS A 142 -1 O LYS A 140 N ARG A 127 SHEET 1 B 8 LYS A 134 LEU A 135 0 SHEET 2 B 8 ALA A 125 SER A 131 -1 N SER A 131 O LYS A 134 SHEET 3 B 8 HIS A 112 LYS A 118 -1 N ILE A 115 O ALA A 128 SHEET 4 B 8 GLY A 147 GLU A 153 -1 O GLN A 149 N THR A 116 SHEET 5 B 8 LEU A 58 ASP A 63 -1 N ILE A 59 O VAL A 152 SHEET 6 B 8 SER A 46 LYS A 52 -1 N ILE A 50 O GLN A 60 SHEET 7 B 8 SER A 191 LYS A 196 1 O SER A 193 N VAL A 49 SHEET 8 B 8 VAL A 204 ARG A 205 -1 O VAL A 204 N VAL A 194 SHEET 1 C 5 LEU A 228 ASP A 235 0 SHEET 2 C 5 PHE A 240 SER A 247 -1 O ILE A 246 N ILE A 229 SHEET 3 C 5 PHE A 291 GLU A 297 -1 O SER A 295 N ASN A 243 SHEET 4 C 5 ILE A 257 ILE A 262 1 N LEU A 259 O LEU A 292 SHEET 5 C 5 ARG A 265 LEU A 266 -1 O ARG A 265 N ILE A 262 SITE 1 AC1 21 ILE A 8 GLU A 34 ASN A 38 ASP A 41 SITE 2 AC1 21 ALA A 42 ASP A 63 ILE A 68 VAL A 76 SITE 3 AC1 21 THR A 82 SER A 83 LYS A 84 ARG A 100 SITE 4 AC1 21 GLY A 101 ALA A 103 LEU A 104 THR A 148 SITE 5 AC1 21 HOH A 348 HOH A 352 HOH A 356 HOH A 358 SITE 6 AC1 21 HOH A 361 CRYST1 94.468 94.468 85.802 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010586 0.006112 0.000000 0.00000 SCALE2 0.000000 0.012223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011655 0.00000