data_3NAJ # _entry.id 3NAJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3NAJ RCSB RCSB059586 WWPDB D_1000059586 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2012-07-11 _pdbx_database_PDB_obs_spr.pdb_id 4FQZ _pdbx_database_PDB_obs_spr.replace_pdb_id 3NAJ _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 3NAJ _pdbx_database_status.recvd_initial_deposition_date 2010-06-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yoshida, H.' 1 'Kamitori, S.' 2 # _citation.id primary _citation.title 'Crystal structure of a protease-resistant mutant form of human galectin-8' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Yoshida, H.' 1 primary 'Kamitori, S.' 2 # _cell.entry_id 3NAJ _cell.length_a 79.259 _cell.length_b 79.259 _cell.length_c 129.820 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NAJ _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Galectin-8 33110.141 1 ? ? 'Galectin 1 and Galectin 2' ? 2 non-polymer man BETA-D-GALACTOSE 180.156 1 ? ? ? ? 3 non-polymer man BETA-D-GLUCOSE 180.156 1 ? ? ? ? 4 water nat water 18.015 42 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Gal-8, Prostate carcinoma tumor antigen 1, PCTA-1, Po66 carbohydrate-binding protein, Po66-CBP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MMLSLNNLQNIIYNPVIPFVGTIPDQLDPGTLIVIRGHVPSDADRFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNT LINEKWGREEITYDTPFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIGFSFSSHMRLP FAARLNTPMGPGRTVVVKGEVNANAKSFNVDLLAGKSKDIALHLNPRLNIKAFVRNSFLQESWGEEERNITSFPFSPGMY FEMIIYCDVREFKVAVNGVHSLEYKHRFKELSSIDTLEINGDIHLLEVRSW ; _entity_poly.pdbx_seq_one_letter_code_can ;MMLSLNNLQNIIYNPVIPFVGTIPDQLDPGTLIVIRGHVPSDADRFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNT LINEKWGREEITYDTPFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIGFSFSSHMRLP FAARLNTPMGPGRTVVVKGEVNANAKSFNVDLLAGKSKDIALHLNPRLNIKAFVRNSFLQESWGEEERNITSFPFSPGMY FEMIIYCDVREFKVAVNGVHSLEYKHRFKELSSIDTLEINGDIHLLEVRSW ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 MET n 1 3 LEU n 1 4 SER n 1 5 LEU n 1 6 ASN n 1 7 ASN n 1 8 LEU n 1 9 GLN n 1 10 ASN n 1 11 ILE n 1 12 ILE n 1 13 TYR n 1 14 ASN n 1 15 PRO n 1 16 VAL n 1 17 ILE n 1 18 PRO n 1 19 PHE n 1 20 VAL n 1 21 GLY n 1 22 THR n 1 23 ILE n 1 24 PRO n 1 25 ASP n 1 26 GLN n 1 27 LEU n 1 28 ASP n 1 29 PRO n 1 30 GLY n 1 31 THR n 1 32 LEU n 1 33 ILE n 1 34 VAL n 1 35 ILE n 1 36 ARG n 1 37 GLY n 1 38 HIS n 1 39 VAL n 1 40 PRO n 1 41 SER n 1 42 ASP n 1 43 ALA n 1 44 ASP n 1 45 ARG n 1 46 PHE n 1 47 GLN n 1 48 VAL n 1 49 ASP n 1 50 LEU n 1 51 GLN n 1 52 ASN n 1 53 GLY n 1 54 SER n 1 55 SER n 1 56 MET n 1 57 LYS n 1 58 PRO n 1 59 ARG n 1 60 ALA n 1 61 ASP n 1 62 VAL n 1 63 ALA n 1 64 PHE n 1 65 HIS n 1 66 PHE n 1 67 ASN n 1 68 PRO n 1 69 ARG n 1 70 PHE n 1 71 LYS n 1 72 ARG n 1 73 ALA n 1 74 GLY n 1 75 CYS n 1 76 ILE n 1 77 VAL n 1 78 CYS n 1 79 ASN n 1 80 THR n 1 81 LEU n 1 82 ILE n 1 83 ASN n 1 84 GLU n 1 85 LYS n 1 86 TRP n 1 87 GLY n 1 88 ARG n 1 89 GLU n 1 90 GLU n 1 91 ILE n 1 92 THR n 1 93 TYR n 1 94 ASP n 1 95 THR n 1 96 PRO n 1 97 PHE n 1 98 LYS n 1 99 ARG n 1 100 GLU n 1 101 LYS n 1 102 SER n 1 103 PHE n 1 104 GLU n 1 105 ILE n 1 106 VAL n 1 107 ILE n 1 108 MET n 1 109 VAL n 1 110 LEU n 1 111 LYS n 1 112 ASP n 1 113 LYS n 1 114 PHE n 1 115 GLN n 1 116 VAL n 1 117 ALA n 1 118 VAL n 1 119 ASN n 1 120 GLY n 1 121 LYS n 1 122 HIS n 1 123 THR n 1 124 LEU n 1 125 LEU n 1 126 TYR n 1 127 GLY n 1 128 HIS n 1 129 ARG n 1 130 ILE n 1 131 GLY n 1 132 PRO n 1 133 GLU n 1 134 LYS n 1 135 ILE n 1 136 ASP n 1 137 THR n 1 138 LEU n 1 139 GLY n 1 140 ILE n 1 141 TYR n 1 142 GLY n 1 143 LYS n 1 144 VAL n 1 145 ASN n 1 146 ILE n 1 147 HIS n 1 148 SER n 1 149 ILE n 1 150 GLY n 1 151 PHE n 1 152 SER n 1 153 PHE n 1 154 SER n 1 155 SER n 1 156 HIS n 1 157 MET n 1 158 ARG n 1 159 LEU n 1 160 PRO n 1 161 PHE n 1 162 ALA n 1 163 ALA n 1 164 ARG n 1 165 LEU n 1 166 ASN n 1 167 THR n 1 168 PRO n 1 169 MET n 1 170 GLY n 1 171 PRO n 1 172 GLY n 1 173 ARG n 1 174 THR n 1 175 VAL n 1 176 VAL n 1 177 VAL n 1 178 LYS n 1 179 GLY n 1 180 GLU n 1 181 VAL n 1 182 ASN n 1 183 ALA n 1 184 ASN n 1 185 ALA n 1 186 LYS n 1 187 SER n 1 188 PHE n 1 189 ASN n 1 190 VAL n 1 191 ASP n 1 192 LEU n 1 193 LEU n 1 194 ALA n 1 195 GLY n 1 196 LYS n 1 197 SER n 1 198 LYS n 1 199 ASP n 1 200 ILE n 1 201 ALA n 1 202 LEU n 1 203 HIS n 1 204 LEU n 1 205 ASN n 1 206 PRO n 1 207 ARG n 1 208 LEU n 1 209 ASN n 1 210 ILE n 1 211 LYS n 1 212 ALA n 1 213 PHE n 1 214 VAL n 1 215 ARG n 1 216 ASN n 1 217 SER n 1 218 PHE n 1 219 LEU n 1 220 GLN n 1 221 GLU n 1 222 SER n 1 223 TRP n 1 224 GLY n 1 225 GLU n 1 226 GLU n 1 227 GLU n 1 228 ARG n 1 229 ASN n 1 230 ILE n 1 231 THR n 1 232 SER n 1 233 PHE n 1 234 PRO n 1 235 PHE n 1 236 SER n 1 237 PRO n 1 238 GLY n 1 239 MET n 1 240 TYR n 1 241 PHE n 1 242 GLU n 1 243 MET n 1 244 ILE n 1 245 ILE n 1 246 TYR n 1 247 CYS n 1 248 ASP n 1 249 VAL n 1 250 ARG n 1 251 GLU n 1 252 PHE n 1 253 LYS n 1 254 VAL n 1 255 ALA n 1 256 VAL n 1 257 ASN n 1 258 GLY n 1 259 VAL n 1 260 HIS n 1 261 SER n 1 262 LEU n 1 263 GLU n 1 264 TYR n 1 265 LYS n 1 266 HIS n 1 267 ARG n 1 268 PHE n 1 269 LYS n 1 270 GLU n 1 271 LEU n 1 272 SER n 1 273 SER n 1 274 ILE n 1 275 ASP n 1 276 THR n 1 277 LEU n 1 278 GLU n 1 279 ILE n 1 280 ASN n 1 281 GLY n 1 282 ASP n 1 283 ILE n 1 284 HIS n 1 285 LEU n 1 286 LEU n 1 287 GLU n 1 288 VAL n 1 289 ARG n 1 290 SER n 1 291 TRP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene LGALS8 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP LEG8_HUMAN O00214 1 ;MMLSLNNLQNIIYNPVIPFVGTIPDQLDPGTLIVIRGHVPSDADRFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNT LINEKWGREEITYDTPFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIGFSFSS ; 1 ? 2 UNP LEG8_HUMAN O00214 1 ;RLPFAARLNTPMGPGRTVVVKGEVNANAKSFNVDLLAGKSKDIALHLNPRLNIKAFVRNSFLQESWGEEERNITSFPFSP GMYFEMIIYCDVREFKVAVNGVHSLEYKHRFKELSSIDTLEINGDIHLLEVRSW ; 184 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NAJ A 1 ? 155 ? O00214 1 ? 155 ? 1 155 2 2 3NAJ A 158 ? 291 ? O00214 184 ? 317 ? 158 291 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NAJ HIS A 156 ? UNP O00214 ? ? LINKER 156 1 1 3NAJ MET A 157 ? UNP O00214 ? ? LINKER 157 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BGC saccharide . BETA-D-GLUCOSE ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GAL D-saccharide . BETA-D-GALACTOSE ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3NAJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.08 _exptl_crystal.density_percent_sol 60.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.pdbx_details '10% PEG 20000, 0.1M Bicine, 2% Dioxane, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-05-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-5A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3NAJ _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.8 _reflns.number_obs 10378 _reflns.number_all ? _reflns.percent_possible_obs 95.6 _reflns.pdbx_Rmerge_I_obs 0.096 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.3 _reflns.B_iso_Wilson_estimate 66.5 _reflns.pdbx_redundancy 5.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 92.8 _reflns_shell.Rmerge_I_obs 0.385 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.26 _reflns_shell.pdbx_redundancy 5.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3NAJ _refine.ls_number_reflns_obs 9630 _refine.ls_number_reflns_all 9630 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 44256.57 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.98 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 89.7 _refine.ls_R_factor_obs 0.216 _refine.ls_R_factor_all 0.220 _refine.ls_R_factor_R_work 0.216 _refine.ls_R_factor_R_free 0.257 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.4 _refine.ls_number_reflns_R_free 1001 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 39.9 _refine.aniso_B[1][1] 14.12 _refine.aniso_B[2][2] 14.12 _refine.aniso_B[3][3] -28.24 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.334707 _refine.solvent_model_param_bsol 30.3187 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2YV8' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3NAJ _refine_analyze.Luzzati_coordinate_error_obs 0.34 _refine_analyze.Luzzati_sigma_a_obs 0.47 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.44 _refine_analyze.Luzzati_sigma_a_free 0.65 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2332 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 2397 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 37.98 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 26.6 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.85 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id 1 _refine_ls_restr_ncs.ncs_model_details NONE _refine_ls_restr_ncs.rms_dev_position ? _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_type . _refine_ls_restr_ncs.pdbx_auth_asym_id . _refine_ls_restr_ncs.pdbx_ens_id 1 _refine_ls_restr_ncs.pdbx_number ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 1248 _refine_ls_shell.R_factor_R_work 0.322 _refine_ls_shell.percent_reflns_obs 80.2 _refine_ls_shell.R_factor_R_free 0.404 _refine_ls_shell.R_factor_R_free_error 0.033 _refine_ls_shell.percent_reflns_R_free 10.5 _refine_ls_shell.number_reflns_R_free 146 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1248 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 carbohydrate.param carbohydrate.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 water_rep.param water.top # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3NAJ _struct.title 'Crystal structure of a protease-resistant mutant form of human galectin-8' _struct.pdbx_descriptor Galectin-8 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NAJ _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'Sugar binding protein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details 'AUTHOR STATES THAT THE BIOLOGICAL ASSEMBLY IS MONOMER OR UNKNOWN.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 131 ? ILE A 135 ? GLY A 131 ILE A 135 5 ? 5 HELX_P HELX_P2 2 GLU A 270 ? ILE A 274 ? GLU A 270 ILE A 274 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id GAL _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_label_atom_id C1 _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_comp_id BGC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id O4 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GAL _struct_conn.ptnr1_auth_seq_id 401 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BGC _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.388 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 17 A . ? ILE 17 A PRO 18 A ? PRO 18 A 1 -0.22 2 LYS 57 A . ? LYS 57 A PRO 58 A ? PRO 58 A 1 0.67 3 LEU 159 A . ? LEU 159 A PRO 160 A ? PRO 160 A 1 0.19 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? C ? 6 ? D ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 5 ? ASN A 6 ? LEU A 5 ASN A 6 A 2 PHE A 161 ? LEU A 165 ? PHE A 161 LEU A 165 A 3 THR A 276 ? GLY A 281 ? THR A 276 GLY A 281 A 4 PHE A 188 ? ALA A 194 ? PHE A 188 ALA A 194 A 5 ASP A 199 ? ARG A 207 ? ASP A 199 ARG A 207 A 6 ALA A 212 ? PHE A 218 ? ALA A 212 PHE A 218 B 1 ILE A 11 ? TYR A 13 ? ILE A 11 TYR A 13 B 2 ASN A 145 ? SER A 152 ? ASN A 145 SER A 152 B 3 LEU A 32 ? VAL A 39 ? LEU A 32 VAL A 39 B 4 LYS A 101 ? LEU A 110 ? LYS A 101 LEU A 110 B 5 LYS A 113 ? VAL A 118 ? LYS A 113 VAL A 118 B 6 LYS A 121 ? GLY A 127 ? LYS A 121 GLY A 127 C 1 PHE A 19 ? THR A 22 ? PHE A 19 THR A 22 C 2 THR A 137 ? GLY A 142 ? THR A 137 GLY A 142 C 3 PHE A 46 ? GLN A 51 ? PHE A 46 GLN A 51 C 4 VAL A 62 ? ARG A 69 ? VAL A 62 ARG A 69 C 5 CYS A 75 ? LEU A 81 ? CYS A 75 LEU A 81 C 6 THR A 92 ? TYR A 93 ? THR A 92 TYR A 93 D 1 VAL A 259 ? LYS A 265 ? VAL A 259 LYS A 265 D 2 GLU A 251 ? VAL A 256 ? GLU A 251 VAL A 256 D 3 TYR A 240 ? CYS A 247 ? TYR A 240 CYS A 247 D 4 THR A 174 ? VAL A 181 ? THR A 174 VAL A 181 D 5 ILE A 283 ? SER A 290 ? ILE A 283 SER A 290 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 6 ? N ASN A 6 O ARG A 164 ? O ARG A 164 A 2 3 N PHE A 161 ? N PHE A 161 O ILE A 279 ? O ILE A 279 A 3 4 O ASN A 280 ? O ASN A 280 N ASN A 189 ? N ASN A 189 A 4 5 N VAL A 190 ? N VAL A 190 O LEU A 204 ? O LEU A 204 A 5 6 N ASN A 205 ? N ASN A 205 O VAL A 214 ? O VAL A 214 B 1 2 N ILE A 12 ? N ILE A 12 O ILE A 149 ? O ILE A 149 B 2 3 O HIS A 147 ? O HIS A 147 N ARG A 36 ? N ARG A 36 B 3 4 N GLY A 37 ? N GLY A 37 O PHE A 103 ? O PHE A 103 B 4 5 N MET A 108 ? N MET A 108 O GLN A 115 ? O GLN A 115 B 5 6 N VAL A 116 ? N VAL A 116 O LEU A 124 ? O LEU A 124 C 1 2 N GLY A 21 ? N GLY A 21 O LEU A 138 ? O LEU A 138 C 2 3 O GLY A 139 ? O GLY A 139 N ASP A 49 ? N ASP A 49 C 3 4 N VAL A 48 ? N VAL A 48 O PHE A 66 ? O PHE A 66 C 4 5 N ASN A 67 ? N ASN A 67 O VAL A 77 ? O VAL A 77 C 5 6 N ILE A 76 ? N ILE A 76 O THR A 92 ? O THR A 92 D 1 2 O SER A 261 ? O SER A 261 N VAL A 254 ? N VAL A 254 D 2 3 O LYS A 253 ? O LYS A 253 N TYR A 246 ? N TYR A 246 D 3 4 O ILE A 245 ? O ILE A 245 N VAL A 175 ? N VAL A 175 D 4 5 N GLU A 180 ? N GLU A 180 O HIS A 284 ? O HIS A 284 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GAL A 401' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE BGC A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ARG A 45 ? ARG A 45 . ? 1_555 ? 2 AC1 8 HIS A 65 ? HIS A 65 . ? 1_555 ? 3 AC1 8 ASN A 67 ? ASN A 67 . ? 1_555 ? 4 AC1 8 ARG A 69 ? ARG A 69 . ? 1_555 ? 5 AC1 8 ASN A 79 ? ASN A 79 . ? 1_555 ? 6 AC1 8 TRP A 86 ? TRP A 86 . ? 1_555 ? 7 AC1 8 GLU A 89 ? GLU A 89 . ? 1_555 ? 8 AC1 8 BGC C . ? BGC A 402 . ? 1_555 ? 9 AC2 3 ARG A 69 ? ARG A 69 . ? 1_555 ? 10 AC2 3 GLU A 89 ? GLU A 89 . ? 1_555 ? 11 AC2 3 GAL B . ? GAL A 401 . ? 1_555 ? # _database_PDB_matrix.entry_id 3NAJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3NAJ _atom_sites.fract_transf_matrix[1][1] 0.012617 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012617 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007703 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 MET 2 2 2 MET MET A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 HIS 38 38 38 HIS HIS A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 MET 56 56 56 MET MET A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 HIS 65 65 65 HIS HIS A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 CYS 75 75 75 CYS CYS A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 CYS 78 78 78 CYS CYS A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 TRP 86 86 86 TRP TRP A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 PHE 103 103 103 PHE PHE A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 MET 108 108 108 MET MET A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 GLN 115 115 115 GLN GLN A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 HIS 122 122 122 HIS HIS A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 TYR 126 126 126 TYR TYR A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 HIS 128 128 128 HIS HIS A . n A 1 129 ARG 129 129 129 ARG ARG A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 ASP 136 136 136 ASP ASP A . n A 1 137 THR 137 137 137 THR THR A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 ILE 140 140 140 ILE ILE A . n A 1 141 TYR 141 141 141 TYR TYR A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 LYS 143 143 143 LYS LYS A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 HIS 147 147 147 HIS HIS A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 PHE 151 151 151 PHE PHE A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 PHE 153 153 153 PHE PHE A . n A 1 154 SER 154 154 154 SER SER A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 HIS 156 156 156 HIS HIS A . n A 1 157 MET 157 157 157 MET MET A . n A 1 158 ARG 158 158 158 ARG ARG A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 PRO 160 160 160 PRO PRO A . n A 1 161 PHE 161 161 161 PHE PHE A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 ARG 164 164 164 ARG ARG A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 ASN 166 166 166 ASN ASN A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 PRO 168 168 168 PRO PRO A . n A 1 169 MET 169 169 169 MET MET A . n A 1 170 GLY 170 170 170 GLY GLY A . n A 1 171 PRO 171 171 171 PRO PRO A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 THR 174 174 174 THR THR A . n A 1 175 VAL 175 175 175 VAL VAL A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 VAL 177 177 177 VAL VAL A . n A 1 178 LYS 178 178 178 LYS LYS A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 GLU 180 180 180 GLU GLU A . n A 1 181 VAL 181 181 181 VAL VAL A . n A 1 182 ASN 182 182 182 ASN ASN A . n A 1 183 ALA 183 183 183 ALA ALA A . n A 1 184 ASN 184 184 184 ASN ASN A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 LYS 186 186 186 LYS LYS A . n A 1 187 SER 187 187 187 SER SER A . n A 1 188 PHE 188 188 188 PHE PHE A . n A 1 189 ASN 189 189 189 ASN ASN A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 ASP 191 191 191 ASP ASP A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 LEU 193 193 193 LEU LEU A . n A 1 194 ALA 194 194 194 ALA ALA A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 LYS 198 198 198 LYS LYS A . n A 1 199 ASP 199 199 199 ASP ASP A . n A 1 200 ILE 200 200 200 ILE ILE A . n A 1 201 ALA 201 201 201 ALA ALA A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 HIS 203 203 203 HIS HIS A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 ASN 205 205 205 ASN ASN A . n A 1 206 PRO 206 206 206 PRO PRO A . n A 1 207 ARG 207 207 207 ARG ARG A . n A 1 208 LEU 208 208 208 LEU LEU A . n A 1 209 ASN 209 209 209 ASN ASN A . n A 1 210 ILE 210 210 210 ILE ILE A . n A 1 211 LYS 211 211 211 LYS LYS A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 PHE 213 213 213 PHE PHE A . n A 1 214 VAL 214 214 214 VAL VAL A . n A 1 215 ARG 215 215 215 ARG ARG A . n A 1 216 ASN 216 216 216 ASN ASN A . n A 1 217 SER 217 217 217 SER SER A . n A 1 218 PHE 218 218 218 PHE PHE A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 GLN 220 220 220 GLN GLN A . n A 1 221 GLU 221 221 221 GLU GLU A . n A 1 222 SER 222 222 222 SER SER A . n A 1 223 TRP 223 223 223 TRP TRP A . n A 1 224 GLY 224 224 224 GLY GLY A . n A 1 225 GLU 225 225 225 GLU GLU A . n A 1 226 GLU 226 226 226 GLU GLU A . n A 1 227 GLU 227 227 227 GLU GLU A . n A 1 228 ARG 228 228 228 ARG ARG A . n A 1 229 ASN 229 229 229 ASN ASN A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 THR 231 231 231 THR THR A . n A 1 232 SER 232 232 232 SER SER A . n A 1 233 PHE 233 233 233 PHE PHE A . n A 1 234 PRO 234 234 234 PRO PRO A . n A 1 235 PHE 235 235 235 PHE PHE A . n A 1 236 SER 236 236 236 SER SER A . n A 1 237 PRO 237 237 237 PRO PRO A . n A 1 238 GLY 238 238 238 GLY GLY A . n A 1 239 MET 239 239 239 MET MET A . n A 1 240 TYR 240 240 240 TYR TYR A . n A 1 241 PHE 241 241 241 PHE PHE A . n A 1 242 GLU 242 242 242 GLU GLU A . n A 1 243 MET 243 243 243 MET MET A . n A 1 244 ILE 244 244 244 ILE ILE A . n A 1 245 ILE 245 245 245 ILE ILE A . n A 1 246 TYR 246 246 246 TYR TYR A . n A 1 247 CYS 247 247 247 CYS CYS A . n A 1 248 ASP 248 248 248 ASP ASP A . n A 1 249 VAL 249 249 249 VAL VAL A . n A 1 250 ARG 250 250 250 ARG ARG A . n A 1 251 GLU 251 251 251 GLU GLU A . n A 1 252 PHE 252 252 252 PHE PHE A . n A 1 253 LYS 253 253 253 LYS LYS A . n A 1 254 VAL 254 254 254 VAL VAL A . n A 1 255 ALA 255 255 255 ALA ALA A . n A 1 256 VAL 256 256 256 VAL VAL A . n A 1 257 ASN 257 257 257 ASN ASN A . n A 1 258 GLY 258 258 258 GLY GLY A . n A 1 259 VAL 259 259 259 VAL VAL A . n A 1 260 HIS 260 260 260 HIS HIS A . n A 1 261 SER 261 261 261 SER SER A . n A 1 262 LEU 262 262 262 LEU LEU A . n A 1 263 GLU 263 263 263 GLU GLU A . n A 1 264 TYR 264 264 264 TYR TYR A . n A 1 265 LYS 265 265 265 LYS LYS A . n A 1 266 HIS 266 266 266 HIS HIS A . n A 1 267 ARG 267 267 267 ARG ARG A . n A 1 268 PHE 268 268 268 PHE PHE A . n A 1 269 LYS 269 269 269 LYS LYS A . n A 1 270 GLU 270 270 270 GLU GLU A . n A 1 271 LEU 271 271 271 LEU LEU A . n A 1 272 SER 272 272 272 SER SER A . n A 1 273 SER 273 273 273 SER SER A . n A 1 274 ILE 274 274 274 ILE ILE A . n A 1 275 ASP 275 275 275 ASP ASP A . n A 1 276 THR 276 276 276 THR THR A . n A 1 277 LEU 277 277 277 LEU LEU A . n A 1 278 GLU 278 278 278 GLU GLU A . n A 1 279 ILE 279 279 279 ILE ILE A . n A 1 280 ASN 280 280 280 ASN ASN A . n A 1 281 GLY 281 281 281 GLY GLY A . n A 1 282 ASP 282 282 282 ASP ASP A . n A 1 283 ILE 283 283 283 ILE ILE A . n A 1 284 HIS 284 284 284 HIS HIS A . n A 1 285 LEU 285 285 285 LEU LEU A . n A 1 286 LEU 286 286 286 LEU LEU A . n A 1 287 GLU 287 287 287 GLU GLU A . n A 1 288 VAL 288 288 288 VAL VAL A . n A 1 289 ARG 289 289 289 ARG ARG A . n A 1 290 SER 290 290 290 SER SER A . n A 1 291 TRP 291 291 291 TRP TRP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAL 1 401 401 GAL GAL A . C 3 BGC 2 402 402 BGC GLC A . D 4 HOH 1 292 1 HOH HOH A . D 4 HOH 2 293 2 HOH HOH A . D 4 HOH 3 294 3 HOH HOH A . D 4 HOH 4 295 4 HOH HOH A . D 4 HOH 5 296 5 HOH HOH A . D 4 HOH 6 297 6 HOH HOH A . D 4 HOH 7 298 7 HOH HOH A . D 4 HOH 8 299 8 HOH HOH A . D 4 HOH 9 300 9 HOH HOH A . D 4 HOH 10 301 10 HOH HOH A . D 4 HOH 11 302 11 HOH HOH A . D 4 HOH 12 303 12 HOH HOH A . D 4 HOH 13 304 13 HOH HOH A . D 4 HOH 14 305 14 HOH HOH A . D 4 HOH 15 306 15 HOH HOH A . D 4 HOH 16 307 16 HOH HOH A . D 4 HOH 17 308 17 HOH HOH A . D 4 HOH 18 309 18 HOH HOH A . D 4 HOH 19 310 19 HOH HOH A . D 4 HOH 20 311 20 HOH HOH A . D 4 HOH 21 312 21 HOH HOH A . D 4 HOH 22 313 22 HOH HOH A . D 4 HOH 23 314 23 HOH HOH A . D 4 HOH 24 315 24 HOH HOH A . D 4 HOH 25 316 25 HOH HOH A . D 4 HOH 26 317 26 HOH HOH A . D 4 HOH 27 318 27 HOH HOH A . D 4 HOH 28 319 28 HOH HOH A . D 4 HOH 29 320 29 HOH HOH A . D 4 HOH 30 321 30 HOH HOH A . D 4 HOH 31 322 31 HOH HOH A . D 4 HOH 32 323 32 HOH HOH A . D 4 HOH 33 324 33 HOH HOH A . D 4 HOH 34 325 34 HOH HOH A . D 4 HOH 35 326 35 HOH HOH A . D 4 HOH 36 327 36 HOH HOH A . D 4 HOH 37 328 37 HOH HOH A . D 4 HOH 38 329 38 HOH HOH A . D 4 HOH 39 330 39 HOH HOH A . D 4 HOH 40 331 40 HOH HOH A . D 4 HOH 41 332 41 HOH HOH A . D 4 HOH 42 333 42 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2260 ? 2 MORE -10 ? 2 'SSA (A^2)' 26580 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-07-11 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Other # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MOLREP 'model building' . ? 2 CNS refinement 1.1 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 MOLREP phasing . ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 7 ? ? -150.69 71.30 2 1 ASN A 52 ? ? -118.29 79.15 3 1 LYS A 57 ? ? -163.56 94.16 4 1 ASN A 79 ? ? -172.17 -175.78 5 1 HIS A 156 ? ? -69.56 0.67 6 1 SER A 187 ? ? 174.01 166.16 7 1 SER A 197 ? ? -64.18 5.27 8 1 LYS A 198 ? ? 54.90 11.97 9 1 SER A 232 ? ? -174.57 138.72 10 1 SER A 236 ? ? -170.51 145.79 11 1 ARG A 289 ? ? 175.83 155.54 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 BETA-D-GALACTOSE GAL 3 BETA-D-GLUCOSE BGC 4 water HOH #