HEADER SUGAR BINDING PROTEIN 03-JUN-10 3NBD TITLE CLITOCYBE NEBULARIS RICIN B-LIKE LECTIN (CNL) IN COMPLEX WITH LACTOSE, TITLE 2 CRYSTALLIZED AT PH 7.1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RICIN B-LIKE LECTIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLITOCYBE NEBULARIS; SOURCE 3 ORGANISM_TAXID: 117024; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS CLITOCYBE NEBULARIS RICIN B-LIKE LECTIN, LACTOSE, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.RENKO,J.POHLEVEN,J.SABOTIC,J.KOS,D.TURK REVDAT 6 01-NOV-23 3NBD 1 REMARK HETSYN REVDAT 5 29-JUL-20 3NBD 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL LINK SITE ATOM REVDAT 4 08-NOV-17 3NBD 1 REMARK REVDAT 3 19-MAR-14 3NBD 1 JRNL REVDAT 2 07-MAR-12 3NBD 1 JRNL REVDAT 1 21-SEP-11 3NBD 0 JRNL AUTH J.POHLEVEN,M.RENKO,S.MAGISTER,D.F.SMITH,M.KUNZLER, JRNL AUTH 2 B.STRUKELJ,D.TURK,J.KOS,J.SABOTIC JRNL TITL BIVALENT CARBOHYDRATE BINDING IS REQUIRED FOR BIOLOGICAL JRNL TITL 2 ACTIVITY OF CLITOCYBE NEBULARIS LECTIN (CNL), THE JRNL TITL 3 N,N'-DIACETYLLACTOSEDIAMINE (GALNAC BETA 1-4GLCNAC, JRNL TITL 4 LACDINAC)-SPECIFIC LECTIN FROM BASIDIOMYCETE C. NEBULARIS JRNL REF J.BIOL.CHEM. V. 287 10602 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22298779 JRNL DOI 10.1074/JBC.M111.317263 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 128492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6458 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8401 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 443 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2238 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 535 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.029 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.013 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.608 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2441 ; 0.050 ; 0.041 REMARK 3 BOND LENGTHS OTHERS (A): 1532 ; 0.038 ; 0.039 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3391 ; 2.231 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3837 ; 1.689 ; 2.997 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 8.566 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;35.059 ;26.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 374 ;10.972 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.342 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.816 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2713 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 416 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1522 ; 2.361 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 606 ; 0.946 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2514 ; 3.427 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 919 ; 4.863 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 855 ; 6.829 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3973 ; 2.226 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY. THE STRUCTURE WAS REMARK 3 REFINED ALSO WITH MAIN. REMARK 4 REMARK 4 3NBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI111 REMARK 200 OPTICS : COLLIMATING AND FOCUSING, PT REMARK 200 -COATED MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128514 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.140 REMARK 200 RESOLUTION RANGE LOW (A) : 23.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3NBC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.085M HEPES SODIUM, 1.7%(V/V) PEG REMARK 280 400, 2.0M AMMONIUM SULFATE, 19%(W/V) GLYCEROL, PH 7.1, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.55950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.81450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.81450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.55950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ALA A 147 REMARK 475 ALA B 147 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 148 N CA C O CB CG1 CG2 REMARK 480 VAL B 148 N CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 137 O HOH A 208 2.07 REMARK 500 O HOH A 350 O HOH A 357 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 1 CA SER A 1 CB 0.116 REMARK 500 GLY A 112 N GLY A 112 CA 0.105 REMARK 500 SER A 119 CA SER A 119 CB 0.099 REMARK 500 TRP A 140 CE2 TRP A 140 CD2 0.072 REMARK 500 GLY B 102 C GLY B 102 O 0.142 REMARK 500 GLU B 130 CD GLU B 130 OE2 0.083 REMARK 500 VAL B 131 CB VAL B 131 CG1 0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 16 CB - CG - OD1 ANGL. DEV. = 13.0 DEGREES REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LEU A 51 CB - CG - CD2 ANGL. DEV. = 17.4 DEGREES REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 8.3 DEGREES REMARK 500 GLU B 28 OE1 - CD - OE2 ANGL. DEV. = 13.4 DEGREES REMARK 500 LEU B 51 CB - CG - CD2 ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 39 141.82 -178.68 REMARK 500 LYS A 39 134.85 -173.80 REMARK 500 SER A 101 -2.47 -160.14 REMARK 500 ALA A 147 175.15 47.55 REMARK 500 ASN B 100 113.51 -160.66 REMARK 500 SER B 101 -132.78 151.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NBC RELATED DB: PDB REMARK 900 IDENTICAL PROTEIN CRYSTALLIZED AT DIFFERENT PH REMARK 900 RELATED ID: 3NBE RELATED DB: PDB REMARK 900 IDENTICAL PROTEIN, CRYSTALLIZED WITH DIFFERENT LIGAND DBREF 3NBD A 1 148 UNP B2ZRS9 B2ZRS9_CLINE 2 149 DBREF 3NBD B 1 148 UNP B2ZRS9 B2ZRS9_CLINE 2 149 SEQRES 1 A 148 SER ILE THR PRO GLY THR TYR ASN ILE THR ASN VAL ALA SEQRES 2 A 148 TYR THR ASN ARG LEU ILE ASP LEU THR GLY SER ASN PRO SEQRES 3 A 148 ALA GLU ASN THR LEU ILE ILE GLY HIS HIS LEU ASN LYS SEQRES 4 A 148 THR PRO SER GLY TYR GLY ASN GLN GLN TRP THR LEU VAL SEQRES 5 A 148 GLN LEU PRO HIS THR THR ILE TYR THR MET GLN ALA VAL SEQRES 6 A 148 ASN PRO GLN SER TYR VAL ARG VAL ARG ASP ASP ASN LEU SEQRES 7 A 148 VAL ASP GLY ALA ALA LEU VAL GLY SER GLN GLN PRO THR SEQRES 8 A 148 PRO VAL SER ILE GLU SER ALA GLY ASN SER GLY GLN PHE SEQRES 9 A 148 ARG ILE LYS ILE PRO ASN LEU GLY LEU ALA LEU THR LEU SEQRES 10 A 148 PRO SER ASP ALA ASN SER THR PRO ILE VAL LEU GLY GLU SEQRES 11 A 148 VAL ASP GLU THR SER THR ASN GLN LEU TRP ALA PHE GLU SEQRES 12 A 148 SER VAL SER ALA VAL SEQRES 1 B 148 SER ILE THR PRO GLY THR TYR ASN ILE THR ASN VAL ALA SEQRES 2 B 148 TYR THR ASN ARG LEU ILE ASP LEU THR GLY SER ASN PRO SEQRES 3 B 148 ALA GLU ASN THR LEU ILE ILE GLY HIS HIS LEU ASN LYS SEQRES 4 B 148 THR PRO SER GLY TYR GLY ASN GLN GLN TRP THR LEU VAL SEQRES 5 B 148 GLN LEU PRO HIS THR THR ILE TYR THR MET GLN ALA VAL SEQRES 6 B 148 ASN PRO GLN SER TYR VAL ARG VAL ARG ASP ASP ASN LEU SEQRES 7 B 148 VAL ASP GLY ALA ALA LEU VAL GLY SER GLN GLN PRO THR SEQRES 8 B 148 PRO VAL SER ILE GLU SER ALA GLY ASN SER GLY GLN PHE SEQRES 9 B 148 ARG ILE LYS ILE PRO ASN LEU GLY LEU ALA LEU THR LEU SEQRES 10 B 148 PRO SER ASP ALA ASN SER THR PRO ILE VAL LEU GLY GLU SEQRES 11 B 148 VAL ASP GLU THR SER THR ASN GLN LEU TRP ALA PHE GLU SEQRES 12 B 148 SER VAL SER ALA VAL HET GLC C 1 12 HET GAL C 2 11 HET GLC D 1 12 HET GAL D 2 11 HET SO4 A 672 5 HET SO4 A 677 5 HET SO4 A 679 5 HET SO4 B 671 5 HET SO4 B 678 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SO4 SULFATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 3 GLC 2(C6 H12 O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 HOH *535(H2 O) HELIX 1 1 GLY A 23 ASN A 25 5 3 HELIX 2 2 ASP A 75 ASN A 77 5 3 HELIX 3 3 SER A 135 GLN A 138 5 4 HELIX 4 4 GLY B 23 ASN B 25 5 3 HELIX 5 5 ASP B 75 ASN B 77 5 3 HELIX 6 6 SER B 135 GLN B 138 5 4 SHEET 1 A 9 VAL A 127 GLU A 130 0 SHEET 2 A 9 LEU A 113 THR A 116 -1 N THR A 116 O VAL A 127 SHEET 3 A 9 GLN A 103 ILE A 108 -1 N ILE A 108 O LEU A 113 SHEET 4 A 9 TRP A 140 SER A 144 -1 O TRP A 140 N PHE A 104 SHEET 5 A 9 GLY A 5 ASN A 11 -1 N THR A 10 O ALA A 141 SHEET 6 A 9 TRP A 49 GLN A 53 -1 O LEU A 51 N GLY A 5 SHEET 7 A 9 ILE A 59 ALA A 64 -1 O GLN A 63 N THR A 50 SHEET 8 A 9 VAL A 93 SER A 97 -1 O VAL A 93 N TYR A 60 SHEET 9 A 9 GLN A 103 ILE A 108 -1 O LYS A 107 N SER A 94 SHEET 1 B 4 LEU A 18 LEU A 21 0 SHEET 2 B 4 THR A 30 HIS A 35 -1 O HIS A 35 N LEU A 18 SHEET 3 B 4 LEU A 84 SER A 87 -1 O GLY A 86 N THR A 30 SHEET 4 B 4 TYR A 70 VAL A 73 -1 N TYR A 70 O SER A 87 SHEET 1 C 3 LEU A 18 LEU A 21 0 SHEET 2 C 3 THR A 30 HIS A 35 -1 O HIS A 35 N LEU A 18 SHEET 3 C 3 THR A 124 PRO A 125 -1 O THR A 124 N GLY A 34 SHEET 1 D 7 GLY B 5 ASN B 11 0 SHEET 2 D 7 TRP B 49 GLN B 53 -1 O LEU B 51 N GLY B 5 SHEET 3 D 7 ILE B 59 ALA B 64 -1 O GLN B 63 N THR B 50 SHEET 4 D 7 VAL B 93 SER B 97 -1 O VAL B 93 N TYR B 60 SHEET 5 D 7 GLN B 103 LYS B 107 -1 O LYS B 107 N SER B 94 SHEET 6 D 7 TRP B 140 SER B 144 -1 O TRP B 140 N PHE B 104 SHEET 7 D 7 GLY B 5 ASN B 11 -1 N THR B 10 O ALA B 141 SHEET 1 E 4 LEU B 18 LEU B 21 0 SHEET 2 E 4 THR B 30 HIS B 35 -1 O HIS B 35 N LEU B 18 SHEET 3 E 4 LEU B 84 SER B 87 -1 O GLY B 86 N THR B 30 SHEET 4 E 4 TYR B 70 VAL B 73 -1 N TYR B 70 O SER B 87 SHEET 1 F 3 LEU B 18 LEU B 21 0 SHEET 2 F 3 THR B 30 HIS B 35 -1 O HIS B 35 N LEU B 18 SHEET 3 F 3 THR B 124 PRO B 125 -1 O THR B 124 N GLY B 34 SHEET 1 G 2 LEU B 113 THR B 116 0 SHEET 2 G 2 VAL B 127 GLU B 130 -1 O VAL B 127 N THR B 116 LINK O4 GLC C 1 C1 GAL C 2 1555 1555 1.43 LINK O4 GLC D 1 C1 GAL D 2 1555 1555 1.40 CISPEP 1 THR A 40 PRO A 41 0 3.29 CISPEP 2 ASN A 66 PRO A 67 0 -10.21 CISPEP 3 THR B 40 PRO B 41 0 3.92 CISPEP 4 ASN B 66 PRO B 67 0 -10.88 CRYST1 43.119 85.080 97.629 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023192 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010243 0.00000