HEADER SUGAR BINDING PROTEIN 03-JUN-10 3NBE TITLE CLITOCYBE NEBULARIS RICIN B-LIKE LECTIN (CNL) IN COMPLEX WITH N,N'- TITLE 2 DIACETYLLACTOSEDIAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RICIN B-LIKE LECTIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLITOCYBE NEBULARIS; SOURCE 3 ORGANISM_TAXID: 117024; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS CLITOCYBE NEBULARIS RICIN B-LIKE LECTIN, N, N'- KEYWDS 2 DIACETYLLACTOSEDIAMINE, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.RENKO,J.POHLEVEN,J.SABOTIC,J.KOS,D.TURK REVDAT 6 01-NOV-23 3NBE 1 REMARK HETSYN REVDAT 5 29-JUL-20 3NBE 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL LINK SITE ATOM REVDAT 4 08-NOV-17 3NBE 1 REMARK REVDAT 3 19-MAR-14 3NBE 1 JRNL REVDAT 2 07-MAR-12 3NBE 1 JRNL REVDAT 1 13-JUL-11 3NBE 0 JRNL AUTH J.POHLEVEN,M.RENKO,S.MAGISTER,D.F.SMITH,M.KUNZLER, JRNL AUTH 2 B.STRUKELJ,D.TURK,J.KOS,J.SABOTIC JRNL TITL BIVALENT CARBOHYDRATE BINDING IS REQUIRED FOR BIOLOGICAL JRNL TITL 2 ACTIVITY OF CLITOCYBE NEBULARIS LECTIN (CNL), THE JRNL TITL 3 N,N'-DIACETYLLACTOSEDIAMINE (GALNAC BETA 1-4GLCNAC, JRNL TITL 4 LACDINAC)-SPECIFIC LECTIN FROM BASIDIOMYCETE C. NEBULARIS JRNL REF J.BIOL.CHEM. V. 287 10602 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22298779 JRNL DOI 10.1074/JBC.M111.317263 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 27519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1396 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.4360 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.5290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2222 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 361 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.006 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2405 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3313 ; 2.187 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 8.033 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;34.544 ;25.882 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 359 ;11.859 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.918 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 411 ; 0.516 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1805 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1493 ; 1.258 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2451 ; 2.047 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 912 ; 3.004 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 853 ; 4.592 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY. THE STRUCTURE WAS REMARK 3 REFINED ALSO WITH MAIN. REMARK 4 REMARK 4 3NBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27569 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 48.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3NBC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.085M HEPES SODIUM, 1.7%(V/V) PEG REMARK 280 400, 2.0M AMMONIUM SULFATE, 19%(W/V) GLYCEROL, PH 7.1, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.94250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.88850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.47750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.88850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.94250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.47750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 148 REMARK 465 VAL B 148 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ALA B 147 C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 330 O HOH B 235 1655 2.07 REMARK 500 O HOH A 359 O HOH B 154 3555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 16 N ASN A 16 CA -0.127 REMARK 500 GLU A 28 CB GLU A 28 CG 0.130 REMARK 500 LYS A 39 CD LYS A 39 CE 0.169 REMARK 500 TYR A 44 CG TYR A 44 CD1 -0.079 REMARK 500 VAL A 131 CB VAL A 131 CG2 0.139 REMARK 500 SER A 135 CB SER A 135 OG -0.092 REMARK 500 VAL B 85 CB VAL B 85 CG2 0.206 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 20 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 LEU A 21 CB - CG - CD2 ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG A 74 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASN A 100 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 PRO B 41 C - N - CD ANGL. DEV. = 13.4 DEGREES REMARK 500 LEU B 54 CB - CG - CD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG B 72 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 72 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 VAL B 73 CG1 - CB - CG2 ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG B 74 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG B 74 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 74 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 39 135.83 -176.90 REMARK 500 LYS A 39 151.88 170.45 REMARK 500 ASP A 75 15.59 59.92 REMARK 500 ASN A 100 -158.55 -43.65 REMARK 500 SER A 101 -133.44 -76.03 REMARK 500 ALA B 98 56.53 -100.07 REMARK 500 ASN B 100 -114.73 34.98 REMARK 500 SER B 101 114.96 178.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 39 12.60 REMARK 500 GLY A 45 11.09 REMARK 500 LEU A 54 10.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 Z3Q C 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NBC RELATED DB: PDB REMARK 900 IDENTICAL PROTEIN, CRYSTALLIZED WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 3NBD RELATED DB: PDB REMARK 900 IDENTICAL PROTEIN, CRYSTALLIZED WITH DIFFERENT LIGAND DBREF 3NBE A 1 148 UNP B2ZRS9 B2ZRS9_CLINE 2 149 DBREF 3NBE B 1 148 UNP B2ZRS9 B2ZRS9_CLINE 2 149 SEQRES 1 A 148 SER ILE THR PRO GLY THR TYR ASN ILE THR ASN VAL ALA SEQRES 2 A 148 TYR THR ASN ARG LEU ILE ASP LEU THR GLY SER ASN PRO SEQRES 3 A 148 ALA GLU ASN THR LEU ILE ILE GLY HIS HIS LEU ASN LYS SEQRES 4 A 148 THR PRO SER GLY TYR GLY ASN GLN GLN TRP THR LEU VAL SEQRES 5 A 148 GLN LEU PRO HIS THR THR ILE TYR THR MET GLN ALA VAL SEQRES 6 A 148 ASN PRO GLN SER TYR VAL ARG VAL ARG ASP ASP ASN LEU SEQRES 7 A 148 VAL ASP GLY ALA ALA LEU VAL GLY SER GLN GLN PRO THR SEQRES 8 A 148 PRO VAL SER ILE GLU SER ALA GLY ASN SER GLY GLN PHE SEQRES 9 A 148 ARG ILE LYS ILE PRO ASN LEU GLY LEU ALA LEU THR LEU SEQRES 10 A 148 PRO SER ASP ALA ASN SER THR PRO ILE VAL LEU GLY GLU SEQRES 11 A 148 VAL ASP GLU THR SER THR ASN GLN LEU TRP ALA PHE GLU SEQRES 12 A 148 SER VAL SER ALA VAL SEQRES 1 B 148 SER ILE THR PRO GLY THR TYR ASN ILE THR ASN VAL ALA SEQRES 2 B 148 TYR THR ASN ARG LEU ILE ASP LEU THR GLY SER ASN PRO SEQRES 3 B 148 ALA GLU ASN THR LEU ILE ILE GLY HIS HIS LEU ASN LYS SEQRES 4 B 148 THR PRO SER GLY TYR GLY ASN GLN GLN TRP THR LEU VAL SEQRES 5 B 148 GLN LEU PRO HIS THR THR ILE TYR THR MET GLN ALA VAL SEQRES 6 B 148 ASN PRO GLN SER TYR VAL ARG VAL ARG ASP ASP ASN LEU SEQRES 7 B 148 VAL ASP GLY ALA ALA LEU VAL GLY SER GLN GLN PRO THR SEQRES 8 B 148 PRO VAL SER ILE GLU SER ALA GLY ASN SER GLY GLN PHE SEQRES 9 B 148 ARG ILE LYS ILE PRO ASN LEU GLY LEU ALA LEU THR LEU SEQRES 10 B 148 PRO SER ASP ALA ASN SER THR PRO ILE VAL LEU GLY GLU SEQRES 11 B 148 VAL ASP GLU THR SER THR ASN GLN LEU TRP ALA PHE GLU SEQRES 12 B 148 SER VAL SER ALA VAL HET Z3Q C 1 20 HET NGA C 2 14 HET Z3Q D 1 20 HET NGA D 2 14 HET SO4 A 355 5 HET SO4 B 356 5 HETNAM Z3Q 2-AZIDOETHYL 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSIDE HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETNAM SO4 SULFATE ION HETSYN Z3Q 2-AZIDOETHYL 2-(ACETYLAMINO)-2-DEOXY-BETA-D- HETSYN 2 Z3Q GLUCOPYRANOSIDE; 2-AZIDOETHYL 2-ACETAMIDO-2-DEOXY- HETSYN 3 Z3Q BETA-D-GLUCOSIDE; 2-AZIDOETHYL 2-ACETAMIDO-2-DEOXY-D- HETSYN 4 Z3Q GLUCOSIDE; 2-AZIDOETHYL 2-ACETAMIDO-2-DEOXY-GLUCOSIDE HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE FORMUL 3 Z3Q 2(C10 H18 N4 O6) FORMUL 3 NGA 2(C8 H15 N O6) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *361(H2 O) HELIX 1 1 GLY A 23 ASN A 25 5 3 HELIX 2 2 ASP A 75 ASN A 77 5 3 HELIX 3 3 SER A 135 GLN A 138 5 4 HELIX 4 4 GLY B 23 ASN B 25 5 3 HELIX 5 5 ASP B 75 ASN B 77 5 3 HELIX 6 6 SER B 135 GLN B 138 5 4 SHEET 1 A 9 VAL A 127 GLU A 130 0 SHEET 2 A 9 LEU A 113 THR A 116 -1 N ALA A 114 O GLY A 129 SHEET 3 A 9 GLN A 103 ILE A 108 -1 N ILE A 108 O LEU A 113 SHEET 4 A 9 TRP A 140 SER A 144 -1 O TRP A 140 N PHE A 104 SHEET 5 A 9 GLY A 5 ASN A 11 -1 N ASN A 8 O GLU A 143 SHEET 6 A 9 TRP A 49 GLN A 53 -1 O LEU A 51 N GLY A 5 SHEET 7 A 9 ILE A 59 ALA A 64 -1 O GLN A 63 N THR A 50 SHEET 8 A 9 VAL A 93 SER A 97 -1 O VAL A 93 N TYR A 60 SHEET 9 A 9 GLN A 103 ILE A 108 -1 O LYS A 107 N SER A 94 SHEET 1 B 4 LEU A 18 LEU A 21 0 SHEET 2 B 4 THR A 30 HIS A 35 -1 O HIS A 35 N LEU A 18 SHEET 3 B 4 LEU A 84 SER A 87 -1 O LEU A 84 N ILE A 32 SHEET 4 B 4 TYR A 70 VAL A 73 -1 N TYR A 70 O SER A 87 SHEET 1 C 3 LEU A 18 LEU A 21 0 SHEET 2 C 3 THR A 30 HIS A 35 -1 O HIS A 35 N LEU A 18 SHEET 3 C 3 THR A 124 PRO A 125 -1 O THR A 124 N GLY A 34 SHEET 1 D 9 VAL B 127 GLU B 130 0 SHEET 2 D 9 LEU B 113 THR B 116 -1 N THR B 116 O VAL B 127 SHEET 3 D 9 GLN B 103 ILE B 108 -1 N ILE B 106 O LEU B 115 SHEET 4 D 9 TRP B 140 SER B 144 -1 O TRP B 140 N PHE B 104 SHEET 5 D 9 GLY B 5 ASN B 11 -1 N THR B 10 O ALA B 141 SHEET 6 D 9 TRP B 49 GLN B 53 -1 O LEU B 51 N GLY B 5 SHEET 7 D 9 ILE B 59 ALA B 64 -1 O GLN B 63 N THR B 50 SHEET 8 D 9 VAL B 93 SER B 97 -1 O VAL B 93 N TYR B 60 SHEET 9 D 9 GLN B 103 ILE B 108 -1 O LYS B 107 N SER B 94 SHEET 1 E 4 LEU B 18 LEU B 21 0 SHEET 2 E 4 THR B 30 HIS B 35 -1 O HIS B 35 N LEU B 18 SHEET 3 E 4 LEU B 84 SER B 87 -1 O GLY B 86 N THR B 30 SHEET 4 E 4 TYR B 70 VAL B 73 -1 N TYR B 70 O SER B 87 SHEET 1 F 3 LEU B 18 LEU B 21 0 SHEET 2 F 3 THR B 30 HIS B 35 -1 O HIS B 35 N LEU B 18 SHEET 3 F 3 THR B 124 PRO B 125 -1 O THR B 124 N GLY B 34 LINK O4 Z3Q C 1 C1 NGA C 2 1555 1555 1.32 LINK O4 Z3Q D 1 C1 NGA D 2 1555 1555 1.39 CISPEP 1 THR A 40 PRO A 41 0 0.41 CISPEP 2 ASN A 66 PRO A 67 0 -0.53 CISPEP 3 THR B 40 PRO B 41 0 0.86 CISPEP 4 ASN B 66 PRO B 67 0 -0.52 CRYST1 41.885 80.955 95.777 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023875 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012353 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010441 0.00000