HEADER HYDROLASE 04-JUN-10 3NBX TITLE CRYSTAL STRUCTURE OF E. COLI RAVA (REGULATORY ATPASE VARIANT A) IN TITLE 2 COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATPASE RAVA; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: REGULATORY ATPASE VARIANT A; COMPND 5 EC: 3.6.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12 MG1655; SOURCE 5 GENE: B3746, JW3725, RAVA, YIEN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P11 KEYWDS AAA+ ATPASE, ALPHA-BETA-ALPHA STRUCTURE, ROSSMANN FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.EL BAKKOURI REVDAT 2 12-NOV-14 3NBX 1 KEYWDS REVDAT 1 12-JAN-11 3NBX 0 JRNL AUTH M.EL BAKKOURI,I.GUTSCHE,U.KANJEE,B.ZHAO,M.YU,G.GORET, JRNL AUTH 2 G.SCHOEHN,W.P.BURMEISTER,W.A.HOURY JRNL TITL STRUCTURE OF RAVA MOXR AAA+ PROTEIN REVEALS THE DESIGN JRNL TITL 2 PRINCIPLES OF A MOLECULAR CAGE MODULATING THE INDUCIBLE JRNL TITL 3 LYSINE DECARBOXYLASE ACTIVITY JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 22499 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 21148420 JRNL DOI 10.1073/PNAS.1009092107 REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 939 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1183 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3847 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 88.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.31000 REMARK 3 B22 (A**2) : -2.31000 REMARK 3 B33 (A**2) : 3.47000 REMARK 3 B12 (A**2) : -1.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.379 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.295 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.524 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3949 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5348 ; 0.970 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 478 ; 4.579 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;36.433 ;24.180 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 712 ;17.851 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.991 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 600 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2953 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1769 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2694 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 116 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 84 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.113 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB059636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.004 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : 1 COLLIMATING MIRROR, 1 FOCUSING REMARK 200 TOROIDAL MIRROR SI(111) DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18402 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.910 REMARK 200 RESOLUTION RANGE LOW (A) : 29.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 2 MM ATP, 10 MM REMARK 280 MGCL2, 0.1-0.6 M AMMONIUM SULFATE, 10-20% GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.87733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.43867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.65800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 9.21933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.09667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR STATES THAT THE BIOLOGICAL ASSEMBLY IS A HEXAMER REMARK 300 AND CAN BE GENERATED USING THE FOLLOWING MATRIX. REMARK 300 REMARK 300 1.000000 0.000000 0.000000 -0.00000 REMARK 300 0.000000 1.000000 0.000000 0.00000 REMARK 300 0.000000 0.000000 1.000000 0.00000 REMARK 300 0.519950 -0.829970 0.201980 -13.57312 REMARK 300 0.788100 0.557320 0.261340 -13.64050 REMARK 300 -0.329470 0.023300 0.943880 1.85240 REMARK 300 -0.461170 -0.884830 0.066300 -8.33842 REMARK 300 0.735400 -0.339340 0.586540 -32.81131 REMARK 300 -0.496490 0.319260 0.807200 9.92959 REMARK 300 -0.958100 -0.112630 -0.263350 10.26787 REMARK 300 -0.081610 -0.773990 0.627920 -37.96370 REMARK 300 -0.274550 0.623100 0.732370 14.40234 REMARK 300 -0.453740 0.726710 -0.515760 25.73058 REMARK 300 -0.888740 -0.326650 0.321620 -21.89569 REMARK 300 0.065250 0.604310 0.794080 12.19125 REMARK 300 0.511830 0.781950 -0.355780 19.18100 REMARK 300 -0.828960 0.558250 0.034410 -4.21656 REMARK 300 0.225520 0.277320 0.933940 5.02638 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY X -1 REMARK 465 MET X 0 REMARK 465 MET X 1 REMARK 465 ALA X 2 REMARK 465 ILE X 88 REMARK 465 GLN X 89 REMARK 465 ALA X 90 REMARK 465 LEU X 91 REMARK 465 LYS X 92 REMARK 465 ASP X 93 REMARK 465 GLU X 94 REMARK 465 GLY X 95 REMARK 465 ARG X 96 REMARK 465 TYR X 97 REMARK 465 SER X 438 REMARK 465 ALA X 439 REMARK 465 GLU X 440 REMARK 465 GLY X 441 REMARK 465 CYS X 498 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA X 140 -84.27 -89.96 REMARK 500 ALA X 335 -141.97 -131.38 REMARK 500 SER X 392 -61.86 -92.01 REMARK 500 GLN X 496 79.33 -102.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH X 507 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH X 511 DISTANCE = 5.30 ANGSTROMS REMARK 525 HOH X 512 DISTANCE = 5.62 ANGSTROMS REMARK 525 HOH X 514 DISTANCE = 5.20 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP X 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 X 499 DBREF 3NBX X 1 498 UNP P31473 RAVA_ECOLI 1 498 SEQADV 3NBX GLY X -1 UNP P31473 EXPRESSION TAG SEQADV 3NBX MET X 0 UNP P31473 EXPRESSION TAG SEQRES 1 X 500 GLY MET MET ALA HIS PRO HIS LEU LEU ALA GLU ARG ILE SEQRES 2 X 500 SER ARG LEU SER SER SER LEU GLU LYS GLY LEU TYR GLU SEQRES 3 X 500 ARG SER HIS ALA ILE ARG LEU CYS LEU LEU ALA ALA LEU SEQRES 4 X 500 SER GLY GLU SER VAL PHE LEU LEU GLY PRO PRO GLY ILE SEQRES 5 X 500 ALA LYS SER LEU ILE ALA ARG ARG LEU LYS PHE ALA PHE SEQRES 6 X 500 GLN ASN ALA ARG ALA PHE GLU TYR LEU MET THR ARG PHE SEQRES 7 X 500 SER THR PRO GLU GLU VAL PHE GLY PRO LEU SER ILE GLN SEQRES 8 X 500 ALA LEU LYS ASP GLU GLY ARG TYR GLU ARG LEU THR SER SEQRES 9 X 500 GLY TYR LEU PRO GLU ALA GLU ILE VAL PHE LEU ASP GLU SEQRES 10 X 500 ILE TRP LYS ALA GLY PRO ALA ILE LEU ASN THR LEU LEU SEQRES 11 X 500 THR ALA ILE ASN GLU ARG GLN PHE ARG ASN GLY ALA HIS SEQRES 12 X 500 VAL GLU LYS ILE PRO MET ARG LEU LEU VAL ALA ALA SER SEQRES 13 X 500 ASN GLU LEU PRO GLU ALA ASP SER SER LEU GLU ALA LEU SEQRES 14 X 500 TYR ASP ARG MET LEU ILE ARG LEU TRP LEU ASP LYS VAL SEQRES 15 X 500 GLN ASP LYS ALA ASN PHE ARG SER MET LEU THR SER GLN SEQRES 16 X 500 GLN ASP GLU ASN ASP ASN PRO VAL PRO ASP ALA LEU GLN SEQRES 17 X 500 VAL THR ASP GLU GLU TYR GLU ARG TRP GLN LYS GLU ILE SEQRES 18 X 500 GLY GLU ILE THR LEU PRO ASP HIS VAL PHE GLU LEU ILE SEQRES 19 X 500 PHE MET LEU ARG GLN GLN LEU ASP LYS LEU PRO ASP ALA SEQRES 20 X 500 PRO TYR VAL SER ASP ARG ARG TRP LYS LYS ALA ILE ARG SEQRES 21 X 500 LEU LEU GLN ALA SER ALA PHE PHE SER GLY ARG SER ALA SEQRES 22 X 500 VAL ALA PRO VAL ASP LEU ILE LEU LEU LYS ASP CYS LEU SEQRES 23 X 500 TRP TYR ASP ALA GLN SER LEU ASN LEU ILE GLN GLN GLN SEQRES 24 X 500 ILE ASP VAL LEU MET THR GLY HIS ALA TRP GLN GLN GLN SEQRES 25 X 500 GLY MET LEU THR ARG LEU GLY ALA ILE VAL GLN ARG HIS SEQRES 26 X 500 LEU GLN LEU GLN GLN GLN GLN SER ASP LYS THR ALA LEU SEQRES 27 X 500 THR VAL ILE ARG LEU GLY GLY ILE PHE SER ARG ARG GLN SEQRES 28 X 500 GLN TYR GLN LEU PRO VAL ASN VAL THR ALA SER THR LEU SEQRES 29 X 500 THR LEU LEU LEU GLN LYS PRO LEU LYS LEU HIS ASP MET SEQRES 30 X 500 GLU VAL VAL HIS ILE SER PHE GLU ARG SER ALA LEU GLU SEQRES 31 X 500 GLN TRP LEU SER LYS GLY GLY GLU ILE ARG GLY LYS LEU SEQRES 32 X 500 ASN GLY ILE GLY PHE ALA GLN LYS LEU ASN LEU GLU VAL SEQRES 33 X 500 ASP SER ALA GLN HIS LEU VAL VAL ARG ASP VAL SER LEU SEQRES 34 X 500 GLN GLY SER THR LEU ALA LEU PRO GLY SER SER ALA GLU SEQRES 35 X 500 GLY LEU PRO GLY GLU ILE LYS GLN GLN LEU GLU GLU LEU SEQRES 36 X 500 GLU SER ASP TRP ARG LYS GLN HIS ALA LEU PHE SER GLU SEQRES 37 X 500 GLN GLN LYS CYS LEU PHE ILE PRO GLY ASP TRP LEU GLY SEQRES 38 X 500 ARG ILE GLU ALA SER LEU GLN ASP VAL GLY ALA GLN ILE SEQRES 39 X 500 ARG GLN ALA GLN GLN CYS HET ADP X 800 27 HET SO4 X 499 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *44(H2 O) HELIX 1 1 HIS X 3 LYS X 20 1 18 HELIX 2 2 ARG X 25 GLY X 39 1 15 HELIX 3 3 ALA X 51 LEU X 59 1 9 HELIX 4 4 LYS X 60 PHE X 63 5 4 HELIX 5 5 THR X 78 GLY X 84 1 7 HELIX 6 6 TYR X 104 ALA X 108 5 5 HELIX 7 7 ILE X 116 ALA X 119 5 4 HELIX 8 8 GLY X 120 GLU X 133 1 14 HELIX 9 9 LEU X 164 ASP X 169 1 6 HELIX 10 10 ASP X 182 THR X 191 1 10 HELIX 11 11 THR X 208 GLY X 220 1 13 HELIX 12 12 PRO X 225 LEU X 242 1 18 HELIX 13 13 SER X 249 SER X 267 1 19 HELIX 14 14 ALA X 273 CYS X 283 5 11 HELIX 15 15 ASP X 287 HIS X 305 1 19 HELIX 16 16 GLN X 308 GLN X 330 1 23 HELIX 17 17 ARG X 384 GLY X 394 1 11 HELIX 18 18 PRO X 443 GLU X 466 1 24 HELIX 19 19 PRO X 474 GLN X 496 1 23 SHEET 1 A 5 ALA X 68 LEU X 72 0 SHEET 2 A 5 ILE X 110 ASP X 114 1 O PHE X 112 N PHE X 69 SHEET 3 A 5 LEU X 149 SER X 154 1 O LEU X 149 N VAL X 111 SHEET 4 A 5 SER X 41 LEU X 45 1 N LEU X 44 O ALA X 152 SHEET 5 A 5 ILE X 173 TRP X 176 1 O ILE X 173 N PHE X 43 SHEET 1 B 2 GLN X 135 ARG X 137 0 SHEET 2 B 2 VAL X 142 LYS X 144 -1 O GLU X 143 N PHE X 136 SHEET 1 C 2 ILE X 339 ARG X 340 0 SHEET 2 C 2 GLN X 350 TYR X 351 -1 O TYR X 351 N ILE X 339 SHEET 1 D 7 ALA X 407 LYS X 409 0 SHEET 2 D 7 ARG X 398 LEU X 401 -1 N GLY X 399 O GLN X 408 SHEET 3 D 7 MET X 375 GLU X 383 -1 N SER X 381 O LYS X 400 SHEET 4 D 7 THR X 361 LEU X 372 -1 N LEU X 362 O PHE X 382 SHEET 5 D 7 GLY X 429 ALA X 433 -1 O ALA X 433 N LEU X 365 SHEET 6 D 7 LEU X 420 ARG X 423 -1 N VAL X 422 O SER X 430 SHEET 7 D 7 ASN X 411 VAL X 414 -1 N GLU X 413 O VAL X 421 SITE 1 AC1 15 GLY X 21 TYR X 23 GLY X 49 ILE X 50 SITE 2 AC1 15 ALA X 51 LYS X 52 SER X 53 LEU X 54 SITE 3 AC1 15 ARG X 170 VAL X 180 MET X 189 GLU X 196 SITE 4 AC1 15 ARG X 251 LYS X 254 HOH X 537 SITE 1 AC2 4 ARG X 398 LYS X 409 GLN X 468 LYS X 469 CRYST1 162.232 162.232 55.316 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006164 0.003559 0.000000 0.00000 SCALE2 0.000000 0.007118 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018078 0.00000