HEADER TRANSFERASE/TRANSFERASE INHIBITOR 04-JUN-10 3NCG TITLE ACTIVATED CALCIUM-DEPENDENT PROTEIN KINASE 1 FROM CRYPTOSPORIDIUM TITLE 2 PARVUM (CPCDPK1) IN COMPLEX WITH BUMPED KINASE INHIBITOR NM-PP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CPCDPK1, RESIDUES 70-538; COMPND 5 EC: 2.7.11.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOSPORIDIUM PARVUM; SOURCE 3 ORGANISM_TAXID: 353152; SOURCE 4 STRAIN: IOWA II; SOURCE 5 GENE: CDPK1, CGD3_920; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15MHL KEYWDS SERINE/THREONINE PROTEIN KINASE, TRANSFERASE, CALCIUM-BINDING, ATP- KEYWDS 2 BINDING, CALMODULIN, BUMPED KINASE INHIBITOR, TRANSFERASE- KEYWDS 3 TRANSFERASE INHIBITOR COMPLEX, STRUCTURAL GENOMICS, MEDICAL KEYWDS 4 STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA, MSGPP EXPDTA X-RAY DIFFRACTION AUTHOR E.T.LARSON,E.A.MERRITT,MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC AUTHOR 2 PROTOZOA (MSGPP) REVDAT 6 06-SEP-23 3NCG 1 REMARK SEQADV LINK REVDAT 5 08-NOV-17 3NCG 1 REMARK REVDAT 4 20-JUN-12 3NCG 1 REMARK VERSN REVDAT 3 23-MAR-11 3NCG 1 JRNL REVDAT 2 27-OCT-10 3NCG 1 JRNL REVDAT 1 21-JUL-10 3NCG 0 JRNL AUTH R.C.MURPHY,K.K.OJO,E.T.LARSON,A.CASTELLANOS-GONZALEZ, JRNL AUTH 2 B.G.PERERA,K.R.KEYLOUN,J.E.KIM,J.G.BHANDARI,N.R.MULLER, JRNL AUTH 3 C.L.VERLINDE,A.C.WHITE,E.A.MERRITT,W.C.VAN VOORHIS,D.J.MALY JRNL TITL DISCOVERY OF POTENT AND SELECTIVE INHIBITORS OF JRNL TITL 2 CALCIUM-DEPENDENT PROTEIN KINASE 1 (CDPK1) FROM C. PARVUM JRNL TITL 3 AND T. GONDII. JRNL REF ACS MED CHEM LETT V. 1 331 2010 JRNL REFN ISSN 1948-5875 JRNL PMID 21116453 JRNL DOI 10.1021/ML100096T REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.K.OJO,E.T.LARSON,K.R.KEYLOUN,L.J.CASTANEDA,A.E.DEROCHER, REMARK 1 AUTH 2 K.K.INAMPUDI,J.E.KIM,T.L.ARAKAKI,R.C.MURPHY,L.ZHANG, REMARK 1 AUTH 3 A.J.NAPULI,D.J.MALY,C.L.VERLINDE,F.S.BUCKNER,M.PARSONS, REMARK 1 AUTH 4 W.G.HOL,E.A.MERRITT,W.C.VAN VOORHIS REMARK 1 TITL TOXOPLASMA GONDII CALCIUM-DEPENDENT PROTEIN KINASE 1 IS A REMARK 1 TITL 2 TARGET FOR SELECTIVE KINASE INHIBITORS. REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 17 602 2010 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 20436472 REMARK 1 DOI 10.1038/NSMB.1818 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 17724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 907 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1164 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3418 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.75000 REMARK 3 B22 (A**2) : -0.57000 REMARK 3 B33 (A**2) : 2.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.360 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.258 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.201 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.888 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.867 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3547 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2458 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4783 ; 1.105 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5976 ; 0.803 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 432 ; 5.672 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;35.133 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 665 ;15.638 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.018 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 529 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3896 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 719 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2138 ; 1.555 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 869 ; 0.342 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3445 ; 2.634 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1415 ; 2.906 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1334 ; 4.361 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3296 17.6897 7.6707 REMARK 3 T TENSOR REMARK 3 T11: 0.2139 T22: 0.2018 REMARK 3 T33: 0.2295 T12: -0.0078 REMARK 3 T13: -0.0056 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.1611 L22: 2.9009 REMARK 3 L33: 2.6979 L12: -0.1141 REMARK 3 L13: -0.1971 L23: -2.0637 REMARK 3 S TENSOR REMARK 3 S11: 0.0608 S12: -0.0037 S13: 0.0711 REMARK 3 S21: 0.1271 S22: -0.0311 S23: -0.1099 REMARK 3 S31: -0.1956 S32: 0.1965 S33: -0.0297 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 339 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3746 5.0501 9.6204 REMARK 3 T TENSOR REMARK 3 T11: 0.2195 T22: 0.1987 REMARK 3 T33: 0.1637 T12: -0.0295 REMARK 3 T13: -0.0107 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 4.3461 L22: 2.4323 REMARK 3 L33: 1.7787 L12: 0.3029 REMARK 3 L13: -0.5138 L23: 0.5858 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: 0.1433 S13: -0.0925 REMARK 3 S21: -0.0724 S22: -0.0410 S23: 0.1586 REMARK 3 S31: 0.0414 S32: -0.1960 S33: 0.0361 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 340 A 533 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4510 6.0718 31.0702 REMARK 3 T TENSOR REMARK 3 T11: 0.6316 T22: 0.6513 REMARK 3 T33: 0.4969 T12: -0.0549 REMARK 3 T13: -0.1358 T23: 0.1485 REMARK 3 L TENSOR REMARK 3 L11: 5.2802 L22: 0.4838 REMARK 3 L33: 2.3125 L12: 1.2986 REMARK 3 L13: -3.0555 L23: -0.8639 REMARK 3 S TENSOR REMARK 3 S11: -0.0768 S12: -0.5708 S13: -0.0400 REMARK 3 S21: 0.2078 S22: -0.2139 S23: -0.2566 REMARK 3 S31: 0.0190 S32: 0.8680 S33: 0.2907 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3NCG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059655. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17762 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.64900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3MWU, 3IGO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG 3350, 0.35 M DI-AMMONIUM REMARK 280 TARTRATE (NOT PH'ED), 5 MM TCEP, 3 MM MGCL2, 1 MM CACL2, 2 MM REMARK 280 INHIBITOR, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.98400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 ARG A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LYS A 231 REMARK 465 MET A 232 REMARK 465 LYS A 233 REMARK 465 ASP A 234 REMARK 465 ARG A 235 REMARK 465 SER A 422 REMARK 465 LEU A 423 REMARK 465 ILE A 424 REMARK 465 GLN A 425 REMARK 465 ASN A 426 REMARK 465 GLU A 427 REMARK 465 PHE A 492 REMARK 465 LYS A 493 REMARK 465 LEU A 494 REMARK 465 PHE A 495 REMARK 465 SER A 496 REMARK 465 GLN A 497 REMARK 465 ALA A 498 REMARK 465 ASP A 499 REMARK 465 SER A 500 REMARK 465 SER A 501 REMARK 465 ILE A 502 REMARK 465 GLN A 503 REMARK 465 MET A 504 REMARK 465 GLU A 505 REMARK 465 GLU A 506 REMARK 465 LEU A 507 REMARK 465 GLU A 508 REMARK 465 SER A 509 REMARK 465 ILE A 510 REMARK 465 ILE A 511 REMARK 465 GLU A 512 REMARK 465 GLN A 513 REMARK 465 VAL A 514 REMARK 465 ASP A 515 REMARK 465 ASN A 516 REMARK 465 ASN A 517 REMARK 465 LYS A 518 REMARK 465 ASP A 519 REMARK 465 GLY A 520 REMARK 465 GLU A 521 REMARK 465 VAL A 522 REMARK 465 PHE A 534 REMARK 465 VAL A 535 REMARK 465 ARG A 536 REMARK 465 ASN A 537 REMARK 465 GLU A 538 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A -3 CG CD1 CD2 REMARK 470 ASN A 421 CG OD1 ND2 REMARK 470 LYS A 480 CG CD CE NZ REMARK 470 LYS A 485 CG CD CE NZ REMARK 470 SER A 487 OG REMARK 470 LYS A 489 CG CD CE NZ REMARK 470 LEU A 491 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 373 OG1 THR A 377 2.13 REMARK 500 OG SER A 483 O LYS A 485 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A -1 39.33 -82.58 REMARK 500 PHE A 87 -3.08 80.35 REMARK 500 GLN A 99 -1.87 69.40 REMARK 500 GLN A 99 -3.15 70.63 REMARK 500 ASP A 144 -167.03 -124.70 REMARK 500 LYS A 168 -51.70 69.34 REMARK 500 ARG A 197 -19.10 92.84 REMARK 500 ASP A 198 47.61 -154.62 REMARK 500 LYS A 211 -75.91 -56.26 REMARK 500 ASP A 212 49.30 -96.38 REMARK 500 ASP A 219 71.43 69.01 REMARK 500 PHE A 293 51.67 -106.49 REMARK 500 THR A 300 36.93 -99.02 REMARK 500 SER A 336 71.87 -111.77 REMARK 500 ASP A 479 87.77 -67.16 REMARK 500 GLN A 532 42.47 -92.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 551 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 393 OD1 REMARK 620 2 ASN A 395 OD1 85.5 REMARK 620 3 ASP A 397 OD1 83.0 76.9 REMARK 620 4 MET A 399 O 89.4 152.6 75.8 REMARK 620 5 GLU A 404 OE1 114.5 112.3 160.2 94.3 REMARK 620 6 GLU A 404 OE2 92.2 64.9 141.7 142.3 51.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 552 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD1 REMARK 620 2 ASP A 445 OD1 76.7 REMARK 620 3 SER A 447 OG 78.1 83.2 REMARK 620 4 SER A 449 O 83.9 146.8 66.4 REMARK 620 5 GLU A 451 OE2 158.1 90.1 83.0 98.7 REMARK 620 6 GLU A 454 OE1 114.7 129.9 145.6 82.8 87.2 REMARK 620 7 GLU A 454 OE2 100.2 76.5 159.4 134.2 93.5 53.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 553 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 479 OD1 REMARK 620 2 ASP A 481 OD1 88.3 REMARK 620 3 SER A 483 OG 62.4 86.2 REMARK 620 4 LYS A 485 O 70.1 137.3 51.3 REMARK 620 5 GLU A 490 OE2 106.9 62.8 148.1 157.7 REMARK 620 6 GLU A 490 OE1 105.1 111.8 158.6 109.3 49.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 552 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 553 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BK1 A 561 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I79 RELATED DB: PDB REMARK 900 HOMOLOGUE FROM T. GONDII IN CALCIUM-FREE FORM REMARK 900 RELATED ID: 3I7B RELATED DB: PDB REMARK 900 HOMOLOGUE FROM T. GONDII IN CALCIUM-FREE FORM ALSO IN COMPLEX WITH REMARK 900 NM-PP1 REMARK 900 RELATED ID: 3I7C RELATED DB: PDB REMARK 900 HOMOLOGUE FROM T. GONDII IN CALCIUM-FREE FORM IN COMPLEX WITH NA-PP2 REMARK 900 RELATED ID: 3N51 RELATED DB: PDB REMARK 900 HOMOLOGUE FROM T. GONDII IN CALCIUM-FREE FORM IN COMPLEX WITH REMARK 900 BUMPED KINASE INHIBITOR RM-1-95 REMARK 900 RELATED ID: 3MWU RELATED DB: PDB REMARK 900 SAME PROTEIN IN CALCIUM-ACTIVATED FORM IN COMPLEX WITH RM-1-95 REMARK 900 RELATED ID: 3IGO RELATED DB: PDB REMARK 900 SAME PROTEIN IN CALCIUM-ACTIVATED FORM IN COMPLEX WITH AMPPNP DBREF 3NCG A 70 538 UNP A3FQ16 A3FQ16_CRYPV 70 538 SEQADV 3NCG MET A -16 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG HIS A -15 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG HIS A -14 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG HIS A -13 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG HIS A -12 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG HIS A -11 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG HIS A -10 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG SER A -9 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG SER A -8 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG GLY A -7 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG ARG A -6 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG GLU A -5 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG ASN A -4 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG LEU A -3 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG TYR A -2 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG PHE A -1 UNP A3FQ16 EXPRESSION TAG SEQADV 3NCG GLN A 0 UNP A3FQ16 EXPRESSION TAG SEQRES 1 A 486 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 486 LEU TYR PHE GLN GLY THR PHE ALA GLU ARG TYR ASN ILE SEQRES 3 A 486 VAL CYS MET LEU GLY LYS GLY SER PHE GLY GLU VAL LEU SEQRES 4 A 486 LYS CYS LYS ASP ARG ILE THR GLN GLN GLU TYR ALA VAL SEQRES 5 A 486 LYS VAL ILE ASN LYS ALA SER ALA LYS ASN LYS ASP THR SEQRES 6 A 486 SER THR ILE LEU ARG GLU VAL GLU LEU LEU LYS LYS LEU SEQRES 7 A 486 ASP HIS PRO ASN ILE MET LYS LEU PHE GLU ILE LEU GLU SEQRES 8 A 486 ASP SER SER SER PHE TYR ILE VAL GLY GLU LEU TYR THR SEQRES 9 A 486 GLY GLY GLU LEU PHE ASP GLU ILE ILE LYS ARG LYS ARG SEQRES 10 A 486 PHE SER GLU HIS ASP ALA ALA ARG ILE ILE LYS GLN VAL SEQRES 11 A 486 PHE SER GLY ILE THR TYR MET HIS LYS HIS ASN ILE VAL SEQRES 12 A 486 HIS ARG ASP LEU LYS PRO GLU ASN ILE LEU LEU GLU SER SEQRES 13 A 486 LYS GLU LYS ASP CYS ASP ILE LYS ILE ILE ASP PHE GLY SEQRES 14 A 486 LEU SER THR CYS PHE GLN GLN ASN THR LYS MET LYS ASP SEQRES 15 A 486 ARG ILE GLY THR ALA TYR TYR ILE ALA PRO GLU VAL LEU SEQRES 16 A 486 ARG GLY THR TYR ASP GLU LYS CYS ASP VAL TRP SER ALA SEQRES 17 A 486 GLY VAL ILE LEU TYR ILE LEU LEU SER GLY THR PRO PRO SEQRES 18 A 486 PHE TYR GLY LYS ASN GLU TYR ASP ILE LEU LYS ARG VAL SEQRES 19 A 486 GLU THR GLY LYS TYR ALA PHE ASP LEU PRO GLN TRP ARG SEQRES 20 A 486 THR ILE SER ASP ASP ALA LYS ASP LEU ILE ARG LYS MET SEQRES 21 A 486 LEU THR PHE HIS PRO SER LEU ARG ILE THR ALA THR GLN SEQRES 22 A 486 CYS LEU GLU HIS PRO TRP ILE GLN LYS TYR SER SER GLU SEQRES 23 A 486 THR PRO THR ILE SER ASP LEU PRO SER LEU GLU SER ALA SEQRES 24 A 486 MET THR ASN ILE ARG GLN PHE GLN ALA GLU LYS LYS LEU SEQRES 25 A 486 ALA GLN ALA ALA LEU LEU TYR MET ALA SER LYS LEU THR SEQRES 26 A 486 THR LEU ASP GLU THR LYS GLN LEU THR GLU ILE PHE ARG SEQRES 27 A 486 LYS LEU ASP THR ASN ASN ASP GLY MET LEU ASP ARG ASP SEQRES 28 A 486 GLU LEU VAL ARG GLY TYR HIS GLU PHE MET ARG LEU LYS SEQRES 29 A 486 GLY VAL ASP SER ASN SER LEU ILE GLN ASN GLU GLY SER SEQRES 30 A 486 THR ILE GLU ASP GLN ILE ASP SER LEU MET PRO LEU LEU SEQRES 31 A 486 ASP MET ASP GLY SER GLY SER ILE GLU TYR SER GLU PHE SEQRES 32 A 486 ILE ALA SER ALA ILE ASP ARG THR ILE LEU LEU SER ARG SEQRES 33 A 486 GLU ARG MET GLU ARG ALA PHE LYS MET PHE ASP LYS ASP SEQRES 34 A 486 GLY SER GLY LYS ILE SER THR LYS GLU LEU PHE LYS LEU SEQRES 35 A 486 PHE SER GLN ALA ASP SER SER ILE GLN MET GLU GLU LEU SEQRES 36 A 486 GLU SER ILE ILE GLU GLN VAL ASP ASN ASN LYS ASP GLY SEQRES 37 A 486 GLU VAL ASP PHE ASN GLU PHE VAL GLU MET LEU GLN ASN SEQRES 38 A 486 PHE VAL ARG ASN GLU HET CA A 551 1 HET CA A 552 1 HET CA A 553 1 HET BK1 A 561 24 HETNAM CA CALCIUM ION HETNAM BK1 1-(1-METHYLETHYL)-3-(NAPHTHALEN-1-YLMETHYL)-1H- HETNAM 2 BK1 PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE HETSYN BK1 4-AMINO-1-ISO-PROPYL-3-(1-NAPHTHYLMETHYL)PYRAZOLO[3,4- HETSYN 2 BK1 D]PYRIMIDINE FORMUL 2 CA 3(CA 2+) FORMUL 5 BK1 C19 H19 N5 FORMUL 6 HOH *48(H2 O) HELIX 1 1 LYS A 109 LYS A 113 1 5 HELIX 2 2 ASP A 116 LYS A 129 1 14 HELIX 3 3 GLU A 159 LYS A 168 1 10 HELIX 4 4 SER A 171 HIS A 192 1 22 HELIX 5 5 LYS A 200 GLU A 202 5 3 HELIX 6 6 THR A 238 ILE A 242 5 5 HELIX 7 7 ALA A 243 ARG A 248 1 6 HELIX 8 8 ASP A 252 GLY A 270 1 19 HELIX 9 9 ASN A 278 GLY A 289 1 12 HELIX 10 10 LEU A 295 ILE A 301 5 7 HELIX 11 11 SER A 302 LEU A 313 1 12 HELIX 12 12 HIS A 316 ARG A 320 5 5 HELIX 13 13 THR A 322 HIS A 329 1 8 HELIX 14 14 HIS A 329 SER A 336 1 8 HELIX 15 15 SER A 343 GLN A 359 1 17 HELIX 16 16 LYS A 362 THR A 377 1 16 HELIX 17 17 THR A 378 ASP A 393 1 16 HELIX 18 18 ASP A 401 GLY A 417 1 17 HELIX 19 19 THR A 430 ASP A 443 1 14 HELIX 20 20 GLU A 451 ALA A 459 1 9 HELIX 21 21 ASP A 461 LEU A 466 1 6 HELIX 22 22 SER A 467 ASP A 479 1 13 HELIX 23 23 ASP A 523 GLN A 532 1 10 SHEET 1 A 5 TYR A 76 GLY A 85 0 SHEET 2 A 5 GLY A 88 ASP A 95 -1 O VAL A 90 N GLY A 83 SHEET 3 A 5 GLU A 101 ASN A 108 -1 O VAL A 104 N LEU A 91 SHEET 4 A 5 SER A 147 GLY A 152 -1 O GLY A 152 N ALA A 103 SHEET 5 A 5 LEU A 138 GLU A 143 -1 N PHE A 139 O VAL A 151 SHEET 1 B 2 ILE A 204 LEU A 206 0 SHEET 2 B 2 ILE A 215 ILE A 217 -1 O LYS A 216 N LEU A 205 LINK OD1 ASP A 393 CA CA A 551 1555 1555 2.40 LINK OD1 ASN A 395 CA CA A 551 1555 1555 2.31 LINK OD1 ASP A 397 CA CA A 551 1555 1555 2.65 LINK O MET A 399 CA CA A 551 1555 1555 2.16 LINK OE1 GLU A 404 CA CA A 551 1555 1555 2.49 LINK OE2 GLU A 404 CA CA A 551 1555 1555 2.60 LINK OD1 ASP A 443 CA CA A 552 1555 1555 2.53 LINK OD1 ASP A 445 CA CA A 552 1555 1555 2.31 LINK OG SER A 447 CA CA A 552 1555 1555 2.39 LINK O SER A 449 CA CA A 552 1555 1555 2.27 LINK OE2 GLU A 451 CA CA A 552 1555 1555 2.38 LINK OE1 GLU A 454 CA CA A 552 1555 1555 2.30 LINK OE2 GLU A 454 CA CA A 552 1555 1555 2.48 LINK OD1 ASP A 479 CA CA A 553 1555 1555 2.41 LINK OD1 ASP A 481 CA CA A 553 1555 1555 2.42 LINK OG SER A 483 CA CA A 553 1555 1555 2.62 LINK O LYS A 485 CA CA A 553 1555 1555 2.42 LINK OE2 GLU A 490 CA CA A 553 1555 1555 2.61 LINK OE1 GLU A 490 CA CA A 553 1555 1555 2.64 SITE 1 AC1 5 ASP A 393 ASN A 395 ASP A 397 MET A 399 SITE 2 AC1 5 GLU A 404 SITE 1 AC2 6 ASP A 443 ASP A 445 SER A 447 SER A 449 SITE 2 AC2 6 GLU A 451 GLU A 454 SITE 1 AC3 5 ASP A 479 ASP A 481 SER A 483 LYS A 485 SITE 2 AC3 5 GLU A 490 SITE 1 AC4 10 GLY A 83 VAL A 90 ALA A 103 LYS A 105 SITE 2 AC4 10 MET A 136 ILE A 150 GLU A 153 LEU A 154 SITE 3 AC4 10 TYR A 155 LEU A 205 CRYST1 59.991 55.968 81.972 90.00 104.78 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016669 0.000000 0.004397 0.00000 SCALE2 0.000000 0.017867 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012617 0.00000