HEADER HYDROLASE 05-JUN-10 3NCV TITLE NGOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA MISMATCH REPAIR PROTEIN MUTL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES IN UNP 460-658; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 242231; SOURCE 4 STRAIN: FA1090; SOURCE 5 GENE: MUTL, NGO0744, NGOL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ENDONUCLEASE, REPAIR, DIMER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.NAMADURAI,D.JAIN,D.T.NAIR REVDAT 2 20-MAR-24 3NCV 1 SEQADV REVDAT 1 08-DEC-10 3NCV 0 JRNL AUTH S.NAMADURAI,D.JAIN,D.S.KULKARNI,C.R.TABIB,P.FRIEDHOFF, JRNL AUTH 2 D.N.RAO,D.T.NAIR JRNL TITL THE C-TERMINAL DOMAIN OF THE MUTL HOMOLOG FROM NEISSERIA JRNL TITL 2 GONORRHOEAE FORMS AN INVERTED HOMODIMER JRNL REF PLOS ONE V. 5 13726 2010 JRNL REFN ESSN 1932-6203 JRNL PMID 21060849 JRNL DOI 10.1371/JOURNAL.PONE.0013726 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 18165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1543 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1066 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3830 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.4410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2842 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : -1.28000 REMARK 3 B33 (A**2) : 0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.374 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.222 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.727 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2884 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3903 ; 1.881 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 6.602 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;35.075 ;24.127 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 501 ;20.342 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.053 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 458 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2155 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1861 ; 1.031 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2955 ; 1.936 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1023 ; 2.620 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 948 ; 4.352 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 513 B 586 REMARK 3 ORIGIN FOR THE GROUP (A): 36.9440 -1.8582 56.6268 REMARK 3 T TENSOR REMARK 3 T11: 0.6900 T22: 0.1821 REMARK 3 T33: 0.1103 T12: 0.1538 REMARK 3 T13: -0.2095 T23: -0.0793 REMARK 3 L TENSOR REMARK 3 L11: 3.8879 L22: 8.6553 REMARK 3 L33: 6.1258 L12: -2.6839 REMARK 3 L13: 0.6924 L23: -2.8046 REMARK 3 S TENSOR REMARK 3 S11: -0.5003 S12: -0.2068 S13: -0.1908 REMARK 3 S21: 1.1432 S22: 0.0823 S23: -0.0354 REMARK 3 S31: -0.9872 S32: -0.5601 S33: 0.4180 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 463 A 512 REMARK 3 RESIDUE RANGE : A 592 A 654 REMARK 3 RESIDUE RANGE : B 464 B 512 REMARK 3 RESIDUE RANGE : B 592 B 656 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2966 -0.3286 20.5101 REMARK 3 T TENSOR REMARK 3 T11: 0.1866 T22: 0.1663 REMARK 3 T33: 0.1967 T12: 0.0074 REMARK 3 T13: -0.0015 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.3390 L22: 1.5395 REMARK 3 L33: 2.3844 L12: 0.2506 REMARK 3 L13: 1.6858 L23: 0.6934 REMARK 3 S TENSOR REMARK 3 S11: -0.1511 S12: 0.0218 S13: 0.0701 REMARK 3 S21: 0.2110 S22: -0.1156 S23: 0.0244 REMARK 3 S31: -0.1423 S32: -0.0436 S33: 0.2666 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 513 A 586 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2777 1.2009 -1.6217 REMARK 3 T TENSOR REMARK 3 T11: 0.1078 T22: 0.1688 REMARK 3 T33: 0.2462 T12: -0.0321 REMARK 3 T13: -0.0554 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.8363 L22: 5.2841 REMARK 3 L33: 2.0937 L12: 0.1702 REMARK 3 L13: -0.8231 L23: -1.6814 REMARK 3 S TENSOR REMARK 3 S11: 0.2283 S12: -0.1311 S13: -0.1237 REMARK 3 S21: -0.1520 S22: 0.0075 S23: 0.1837 REMARK 3 S31: 0.0927 S32: 0.1864 S33: -0.2358 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS REFINED ALSO WITH CNS REMARK 3 1.1 REMARK 4 REMARK 4 3NCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000059669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97871 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19709 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG8K, 0.2M MAGNESIUM CHLORIDE, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.05000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 439 REMARK 465 MET A 440 REMARK 465 GLY A 441 REMARK 465 SER A 442 REMARK 465 SER A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 465 HIS A 449 REMARK 465 SER A 450 REMARK 465 SER A 451 REMARK 465 GLY A 452 REMARK 465 LEU A 453 REMARK 465 VAL A 454 REMARK 465 PRO A 455 REMARK 465 ARG A 456 REMARK 465 GLY A 457 REMARK 465 SER A 458 REMARK 465 HIS A 459 REMARK 465 SER A 460 REMARK 465 GLN A 461 REMARK 465 SER A 462 REMARK 465 SER A 587 REMARK 465 SER A 588 REMARK 465 GLN A 589 REMARK 465 THR A 590 REMARK 465 ILE A 591 REMARK 465 LEU A 655 REMARK 465 ARG A 656 REMARK 465 GLY A 657 REMARK 465 GLN A 658 REMARK 465 THR B 439 REMARK 465 MET B 440 REMARK 465 GLY B 441 REMARK 465 SER B 442 REMARK 465 SER B 443 REMARK 465 HIS B 444 REMARK 465 HIS B 445 REMARK 465 HIS B 446 REMARK 465 HIS B 447 REMARK 465 HIS B 448 REMARK 465 HIS B 449 REMARK 465 SER B 450 REMARK 465 SER B 451 REMARK 465 GLY B 452 REMARK 465 LEU B 453 REMARK 465 VAL B 454 REMARK 465 PRO B 455 REMARK 465 ARG B 456 REMARK 465 GLY B 457 REMARK 465 SER B 458 REMARK 465 HIS B 459 REMARK 465 SER B 460 REMARK 465 GLN B 461 REMARK 465 SER B 462 REMARK 465 GLU B 463 REMARK 465 SER B 587 REMARK 465 SER B 588 REMARK 465 GLN B 589 REMARK 465 THR B 590 REMARK 465 ILE B 591 REMARK 465 GLY B 657 REMARK 465 GLN B 658 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 505 CG CD CE NZ REMARK 470 ARG B 506 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 511 CG OD1 ND2 REMARK 470 ASP B 570 CG OD1 OD2 REMARK 470 ARG B 656 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C LEU B 474 O HOH B 51 2.08 REMARK 500 O ASP A 551 O THR A 556 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 549 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 PRO B 630 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 483 -168.22 -106.33 REMARK 500 ASP A 485 19.46 54.23 REMARK 500 MET A 552 -26.38 77.00 REMARK 500 LYS A 568 -120.08 63.48 REMARK 500 SER A 569 31.25 120.64 REMARK 500 ASP A 570 84.86 64.94 REMARK 500 GLU A 595 -73.44 -29.80 REMARK 500 ARG A 609 113.15 -166.36 REMARK 500 ALA A 610 110.16 56.81 REMARK 500 CYS A 635 -157.64 -90.12 REMARK 500 ALA B 472 164.20 176.09 REMARK 500 LEU B 474 -139.44 -108.82 REMARK 500 LEU B 475 57.12 -58.70 REMARK 500 ASP B 485 29.29 49.71 REMARK 500 ASP B 491 97.86 -66.25 REMARK 500 HIS B 518 91.40 -65.40 REMARK 500 LEU B 519 126.52 -29.21 REMARK 500 PRO B 522 107.88 -30.91 REMARK 500 MET B 552 52.68 -115.84 REMARK 500 MET B 565 22.37 -79.24 REMARK 500 LYS B 568 -121.41 47.07 REMARK 500 SER B 569 133.63 61.31 REMARK 500 ASP B 570 75.72 13.09 REMARK 500 HIS B 594 2.02 -65.77 REMARK 500 ARG B 609 142.25 155.88 REMARK 500 ALA B 610 -65.16 59.86 REMARK 500 ARG B 612 -134.69 -133.41 REMARK 500 PRO B 630 13.28 -60.60 REMARK 500 ARG B 631 39.67 -164.01 REMARK 500 SER B 632 165.49 -40.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 3NCV A 460 658 UNP Q5F8M6 MUTL_NEIG1 460 658 DBREF 3NCV B 460 658 UNP Q5F8M6 MUTL_NEIG1 460 658 SEQADV 3NCV THR A 439 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV MET A 440 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV GLY A 441 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV SER A 442 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV SER A 443 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV HIS A 444 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV HIS A 445 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV HIS A 446 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV HIS A 447 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV HIS A 448 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV HIS A 449 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV SER A 450 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV SER A 451 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV GLY A 452 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV LEU A 453 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV VAL A 454 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV PRO A 455 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV ARG A 456 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV GLY A 457 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV SER A 458 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV HIS A 459 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV THR B 439 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV MET B 440 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV GLY B 441 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV SER B 442 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV SER B 443 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV HIS B 444 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV HIS B 445 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV HIS B 446 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV HIS B 447 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV HIS B 448 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV HIS B 449 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV SER B 450 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV SER B 451 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV GLY B 452 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV LEU B 453 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV VAL B 454 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV PRO B 455 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV ARG B 456 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV GLY B 457 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV SER B 458 UNP Q5F8M6 EXPRESSION TAG SEQADV 3NCV HIS B 459 UNP Q5F8M6 EXPRESSION TAG SEQRES 1 A 220 THR MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 A 220 GLY LEU VAL PRO ARG GLY SER HIS SER GLN SER GLU LEU SEQRES 3 A 220 PRO PRO LEU GLY PHE ALA ILE ALA GLN LEU LEU GLY ILE SEQRES 4 A 220 TYR ILE LEU ALA GLN ALA GLU ASP SER LEU LEU LEU ILE SEQRES 5 A 220 ASP MET HIS ALA ALA ALA GLU ARG VAL ASN TYR GLU LYS SEQRES 6 A 220 MET LYS ARG GLN ARG GLN GLU ASN GLY ASN LEU GLN SER SEQRES 7 A 220 GLN HIS LEU LEU ILE PRO VAL THR PHE ALA ALA SER HIS SEQRES 8 A 220 GLU GLU CYS ALA ALA LEU ALA ASP HIS ALA GLU THR LEU SEQRES 9 A 220 ALA GLY PHE GLY LEU GLU LEU SER ASP MET GLY GLY ASN SEQRES 10 A 220 THR LEU ALA VAL ARG ALA ALA PRO VAL MET LEU GLY LYS SEQRES 11 A 220 SER ASP VAL VAL SER LEU ALA ARG ASP VAL LEU GLY GLU SEQRES 12 A 220 LEU ALA GLN VAL GLY SER SER GLN THR ILE ALA SER HIS SEQRES 13 A 220 GLU ASN ARG ILE LEU ALA THR MET SER CYS HIS GLY SER SEQRES 14 A 220 ILE ARG ALA GLY ARG ARG LEU THR LEU PRO GLU MET ASN SEQRES 15 A 220 ALA LEU LEU ARG ASP MET GLU ASN THR PRO ARG SER ASN SEQRES 16 A 220 GLN CYS ASN HIS GLY ARG PRO THR TRP VAL LYS LEU THR SEQRES 17 A 220 LEU LYS GLU LEU ASP THR LEU PHE LEU ARG GLY GLN SEQRES 1 B 220 THR MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 B 220 GLY LEU VAL PRO ARG GLY SER HIS SER GLN SER GLU LEU SEQRES 3 B 220 PRO PRO LEU GLY PHE ALA ILE ALA GLN LEU LEU GLY ILE SEQRES 4 B 220 TYR ILE LEU ALA GLN ALA GLU ASP SER LEU LEU LEU ILE SEQRES 5 B 220 ASP MET HIS ALA ALA ALA GLU ARG VAL ASN TYR GLU LYS SEQRES 6 B 220 MET LYS ARG GLN ARG GLN GLU ASN GLY ASN LEU GLN SER SEQRES 7 B 220 GLN HIS LEU LEU ILE PRO VAL THR PHE ALA ALA SER HIS SEQRES 8 B 220 GLU GLU CYS ALA ALA LEU ALA ASP HIS ALA GLU THR LEU SEQRES 9 B 220 ALA GLY PHE GLY LEU GLU LEU SER ASP MET GLY GLY ASN SEQRES 10 B 220 THR LEU ALA VAL ARG ALA ALA PRO VAL MET LEU GLY LYS SEQRES 11 B 220 SER ASP VAL VAL SER LEU ALA ARG ASP VAL LEU GLY GLU SEQRES 12 B 220 LEU ALA GLN VAL GLY SER SER GLN THR ILE ALA SER HIS SEQRES 13 B 220 GLU ASN ARG ILE LEU ALA THR MET SER CYS HIS GLY SER SEQRES 14 B 220 ILE ARG ALA GLY ARG ARG LEU THR LEU PRO GLU MET ASN SEQRES 15 B 220 ALA LEU LEU ARG ASP MET GLU ASN THR PRO ARG SER ASN SEQRES 16 B 220 GLN CYS ASN HIS GLY ARG PRO THR TRP VAL LYS LEU THR SEQRES 17 B 220 LEU LYS GLU LEU ASP THR LEU PHE LEU ARG GLY GLN FORMUL 3 HOH *108(H2 O) HELIX 1 1 MET A 492 GLY A 512 1 21 HELIX 2 2 SER A 528 PHE A 545 1 18 HELIX 3 3 ASP A 570 ALA A 583 1 14 HELIX 4 4 HIS A 594 SER A 603 1 10 HELIX 5 5 THR A 615 ASN A 628 1 14 HELIX 6 6 LEU A 647 LEU A 653 1 7 HELIX 7 7 MET B 492 ASN B 511 1 20 HELIX 8 8 SER B 528 PHE B 545 1 18 HELIX 9 9 MET B 565 GLY B 567 5 3 HELIX 10 10 ASP B 570 GLN B 584 1 15 HELIX 11 11 HIS B 594 CYS B 604 1 11 HELIX 12 12 THR B 615 ASN B 628 1 14 HELIX 13 13 LEU B 647 LEU B 653 1 7 SHEET 1 A 4 PHE A 469 LEU A 474 0 SHEET 2 A 4 TYR A 478 ALA A 483 -1 O TYR A 478 N LEU A 474 SHEET 3 A 4 SER A 486 ASP A 491 -1 O ILE A 490 N ILE A 479 SHEET 4 A 4 TRP A 642 THR A 646 -1 O LEU A 645 N LEU A 487 SHEET 1 B 3 SER A 516 ALA A 526 0 SHEET 2 B 3 THR A 556 PRO A 563 -1 O ARG A 560 N LEU A 519 SHEET 3 B 3 GLU A 548 SER A 550 -1 N GLU A 548 O ARG A 560 SHEET 1 C 4 PHE B 469 GLN B 473 0 SHEET 2 C 4 TYR B 478 ALA B 483 -1 O LEU B 480 N ALA B 472 SHEET 3 C 4 SER B 486 ASP B 491 -1 O ILE B 490 N ILE B 479 SHEET 4 C 4 TRP B 642 THR B 646 -1 O VAL B 643 N LEU B 489 SHEET 1 D 3 SER B 516 ALA B 526 0 SHEET 2 D 3 THR B 556 PRO B 563 -1 O LEU B 557 N PHE B 525 SHEET 3 D 3 GLU B 548 ASP B 551 -1 N GLU B 548 O ARG B 560 CRYST1 49.500 62.100 92.100 90.00 104.60 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020202 0.000000 0.005262 0.00000 SCALE2 0.000000 0.016103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011220 0.00000