HEADER TRANSFERASE 07-JUN-10 3ND5 TITLE CRYSTAL STRUCTURE OF PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE (PPAT) TITLE 2 FROM ENTEROCOCCUS FAECALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: PPAT, PANTETHEINE-PHOSPHATE ADENYLYLTRANSFERASE, DEPHOSPHO- COMPND 5 COA PYROPHOSPHORYLASE; COMPND 6 EC: 2.7.7.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_COMMON: STREPTOCOCCUS FAECALIS; SOURCE 4 ORGANISM_TAXID: 1351; SOURCE 5 GENE: COAD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21A(+) KEYWDS PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE, PPAT, COENZYME A BIOSYNTHETIC KEYWDS 2 PATHWAY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.YOON,H.H.LEE,S.W.SUH REVDAT 3 01-NOV-23 3ND5 1 SEQADV REVDAT 2 14-DEC-11 3ND5 1 JRNL VERSN REVDAT 1 22-JUN-11 3ND5 0 JRNL AUTH H.J.YOON,J.Y.KANG,B.MIKAMI,H.H.LEE,S.W.SUH JRNL TITL CRYSTAL STRUCTURE OF PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE JRNL TITL 2 FROM ENTEROCOCCUS FAECALIS IN THE LIGAND-UNBOUND STATE AND JRNL TITL 3 IN COMPLEX WITH ATP AND PANTETHEINE JRNL REF MOL.CELLS V. 32 431 2011 JRNL REFN ISSN 1016-8478 JRNL PMID 21912874 JRNL DOI 10.1007/S10059-011-0102-Y REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 71247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 7206 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7344 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 534 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ND5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76265 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.38300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1VLH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M SODIUM FORMATE, 100MM TRIS-HCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.09900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.91050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.84150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.91050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.09900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.84150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 39 REMARK 465 THR A 40 REMARK 465 SER A 41 REMARK 465 LYS A 42 REMARK 465 GLN A 43 REMARK 465 THR A 44 REMARK 465 LYS A 159 REMARK 465 ASN A 160 REMARK 465 ASP A 161 REMARK 465 TRP A 162 REMARK 465 SER A 163 REMARK 465 LEU A 164 REMARK 465 GLU A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 465 HIS A 170 REMARK 465 HIS A 171 REMARK 465 ASN B 39 REMARK 465 THR B 40 REMARK 465 SER B 41 REMARK 465 LYS B 42 REMARK 465 GLN B 43 REMARK 465 THR B 44 REMARK 465 LYS B 159 REMARK 465 ASN B 160 REMARK 465 ASP B 161 REMARK 465 TRP B 162 REMARK 465 SER B 163 REMARK 465 LEU B 164 REMARK 465 GLU B 165 REMARK 465 HIS B 166 REMARK 465 HIS B 167 REMARK 465 HIS B 168 REMARK 465 HIS B 169 REMARK 465 HIS B 170 REMARK 465 HIS B 171 REMARK 465 ASN C 39 REMARK 465 THR C 40 REMARK 465 SER C 41 REMARK 465 LYS C 42 REMARK 465 GLN C 43 REMARK 465 THR C 44 REMARK 465 LYS C 159 REMARK 465 ASN C 160 REMARK 465 ASP C 161 REMARK 465 TRP C 162 REMARK 465 SER C 163 REMARK 465 LEU C 164 REMARK 465 GLU C 165 REMARK 465 HIS C 166 REMARK 465 HIS C 167 REMARK 465 HIS C 168 REMARK 465 HIS C 169 REMARK 465 HIS C 170 REMARK 465 HIS C 171 REMARK 465 ASN D 39 REMARK 465 THR D 40 REMARK 465 SER D 41 REMARK 465 LYS D 42 REMARK 465 GLN D 43 REMARK 465 THR D 44 REMARK 465 LYS D 159 REMARK 465 ASN D 160 REMARK 465 ASP D 161 REMARK 465 TRP D 162 REMARK 465 SER D 163 REMARK 465 LEU D 164 REMARK 465 GLU D 165 REMARK 465 HIS D 166 REMARK 465 HIS D 167 REMARK 465 HIS D 168 REMARK 465 HIS D 169 REMARK 465 HIS D 170 REMARK 465 HIS D 171 REMARK 465 ASN E 39 REMARK 465 THR E 40 REMARK 465 SER E 41 REMARK 465 LYS E 42 REMARK 465 GLN E 43 REMARK 465 THR E 44 REMARK 465 LYS E 159 REMARK 465 ASN E 160 REMARK 465 ASP E 161 REMARK 465 TRP E 162 REMARK 465 SER E 163 REMARK 465 LEU E 164 REMARK 465 GLU E 165 REMARK 465 HIS E 166 REMARK 465 HIS E 167 REMARK 465 HIS E 168 REMARK 465 HIS E 169 REMARK 465 HIS E 170 REMARK 465 HIS E 171 REMARK 465 ASN F 39 REMARK 465 THR F 40 REMARK 465 SER F 41 REMARK 465 LYS F 42 REMARK 465 GLN F 43 REMARK 465 THR F 44 REMARK 465 LYS F 159 REMARK 465 ASN F 160 REMARK 465 ASP F 161 REMARK 465 TRP F 162 REMARK 465 SER F 163 REMARK 465 LEU F 164 REMARK 465 GLU F 165 REMARK 465 HIS F 166 REMARK 465 HIS F 167 REMARK 465 HIS F 168 REMARK 465 HIS F 169 REMARK 465 HIS F 170 REMARK 465 HIS F 171 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 184 O HOH D 788 1.46 REMARK 500 OG1 THR A 47 CG GLU A 50 1.47 REMARK 500 O HOH C 173 O HOH F 805 1.68 REMARK 500 O HOH F 187 O HOH F 805 1.71 REMARK 500 OG1 THR A 47 CD GLU A 50 1.95 REMARK 500 O HOH A 196 O HOH A 339 2.00 REMARK 500 O HOH D 236 O HOH D 836 2.04 REMARK 500 OE1 GLU B 123 O HOH B 296 2.15 REMARK 500 O HOH A 195 O HOH B 799 2.17 REMARK 500 CZ ARG A 66 O HOH A 244 2.18 REMARK 500 O HOH A 172 O HOH D 788 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 57 CG GLU B 57 CD 0.112 REMARK 500 GLU C 31 CB GLU C 31 CG 0.115 REMARK 500 GLU C 113 CB GLU C 113 CG 0.141 REMARK 500 GLU C 113 CG GLU C 113 CD 0.095 REMARK 500 GLU E 77 CB GLU E 77 CG -0.168 REMARK 500 ILE F 88 CB ILE F 88 CG2 0.220 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 2 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 2 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ASP C 102 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP D 30 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP E 102 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 PRO F 48 C - N - CD ANGL. DEV. = -16.8 DEGREES REMARK 500 ASP F 145 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 73 174.68 178.52 REMARK 500 ALA A 111 79.18 -159.54 REMARK 500 GLN A 157 -71.68 -50.26 REMARK 500 ALA B 111 79.81 -153.14 REMARK 500 GLN B 157 -0.70 -57.36 REMARK 500 PHE C 11 52.90 38.41 REMARK 500 ASN C 93 -178.53 -171.34 REMARK 500 ALA C 111 81.96 -153.55 REMARK 500 ASN D 64 20.36 -78.71 REMARK 500 PHE E 11 52.45 38.62 REMARK 500 PHE F 11 51.32 39.33 REMARK 500 ALA F 111 74.00 -154.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET C 1 ARG C 2 137.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ND6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ATP REMARK 900 RELATED ID: 3ND7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PANTETHEINE DBREF 3ND5 A 1 163 UNP Q831P9 COAD_ENTFA 1 163 DBREF 3ND5 B 1 163 UNP Q831P9 COAD_ENTFA 1 163 DBREF 3ND5 C 1 163 UNP Q831P9 COAD_ENTFA 1 163 DBREF 3ND5 D 1 163 UNP Q831P9 COAD_ENTFA 1 163 DBREF 3ND5 E 1 163 UNP Q831P9 COAD_ENTFA 1 163 DBREF 3ND5 F 1 163 UNP Q831P9 COAD_ENTFA 1 163 SEQADV 3ND5 LEU A 164 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 GLU A 165 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS A 166 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS A 167 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS A 168 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS A 169 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS A 170 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS A 171 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 LEU B 164 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 GLU B 165 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS B 166 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS B 167 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS B 168 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS B 169 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS B 170 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS B 171 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 LEU C 164 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 GLU C 165 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS C 166 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS C 167 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS C 168 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS C 169 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS C 170 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS C 171 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 LEU D 164 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 GLU D 165 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS D 166 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS D 167 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS D 168 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS D 169 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS D 170 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS D 171 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 LEU E 164 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 GLU E 165 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS E 166 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS E 167 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS E 168 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS E 169 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS E 170 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS E 171 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 LEU F 164 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 GLU F 165 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS F 166 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS F 167 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS F 168 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS F 169 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS F 170 UNP Q831P9 EXPRESSION TAG SEQADV 3ND5 HIS F 171 UNP Q831P9 EXPRESSION TAG SEQRES 1 A 171 MET ARG LYS ILE ALA LEU PHE PRO GLY SER PHE ASP PRO SEQRES 2 A 171 MET THR ASN GLY HIS LEU ASN LEU ILE GLU ARG SER ALA SEQRES 3 A 171 LYS LEU PHE ASP GLU VAL ILE ILE GLY VAL PHE ILE ASN SEQRES 4 A 171 THR SER LYS GLN THR LEU PHE THR PRO GLU GLU LYS LYS SEQRES 5 A 171 TYR LEU ILE GLU GLU ALA THR LYS GLU MET PRO ASN VAL SEQRES 6 A 171 ARG VAL ILE MET GLN GLU THR GLN LEU THR VAL GLU SER SEQRES 7 A 171 ALA LYS SER LEU GLY ALA ASN PHE LEU ILE ARG GLY ILE SEQRES 8 A 171 ARG ASN VAL LYS ASP TYR GLU TYR GLU LYS ASP ILE ALA SEQRES 9 A 171 LYS MET ASN GLN HIS LEU ALA PRO GLU ILE GLU THR VAL SEQRES 10 A 171 PHE LEU LEU ALA GLU GLU PRO TYR ALA HIS VAL SER SER SEQRES 11 A 171 SER LEU LEU LYS GLU VAL LEU ARG PHE GLY GLY ASP VAL SEQRES 12 A 171 SER ASP TYR LEU PRO PRO ASN ILE TYR HIS ALA LEU LYS SEQRES 13 A 171 GLN LYS LYS ASN ASP TRP SER LEU GLU HIS HIS HIS HIS SEQRES 14 A 171 HIS HIS SEQRES 1 B 171 MET ARG LYS ILE ALA LEU PHE PRO GLY SER PHE ASP PRO SEQRES 2 B 171 MET THR ASN GLY HIS LEU ASN LEU ILE GLU ARG SER ALA SEQRES 3 B 171 LYS LEU PHE ASP GLU VAL ILE ILE GLY VAL PHE ILE ASN SEQRES 4 B 171 THR SER LYS GLN THR LEU PHE THR PRO GLU GLU LYS LYS SEQRES 5 B 171 TYR LEU ILE GLU GLU ALA THR LYS GLU MET PRO ASN VAL SEQRES 6 B 171 ARG VAL ILE MET GLN GLU THR GLN LEU THR VAL GLU SER SEQRES 7 B 171 ALA LYS SER LEU GLY ALA ASN PHE LEU ILE ARG GLY ILE SEQRES 8 B 171 ARG ASN VAL LYS ASP TYR GLU TYR GLU LYS ASP ILE ALA SEQRES 9 B 171 LYS MET ASN GLN HIS LEU ALA PRO GLU ILE GLU THR VAL SEQRES 10 B 171 PHE LEU LEU ALA GLU GLU PRO TYR ALA HIS VAL SER SER SEQRES 11 B 171 SER LEU LEU LYS GLU VAL LEU ARG PHE GLY GLY ASP VAL SEQRES 12 B 171 SER ASP TYR LEU PRO PRO ASN ILE TYR HIS ALA LEU LYS SEQRES 13 B 171 GLN LYS LYS ASN ASP TRP SER LEU GLU HIS HIS HIS HIS SEQRES 14 B 171 HIS HIS SEQRES 1 C 171 MET ARG LYS ILE ALA LEU PHE PRO GLY SER PHE ASP PRO SEQRES 2 C 171 MET THR ASN GLY HIS LEU ASN LEU ILE GLU ARG SER ALA SEQRES 3 C 171 LYS LEU PHE ASP GLU VAL ILE ILE GLY VAL PHE ILE ASN SEQRES 4 C 171 THR SER LYS GLN THR LEU PHE THR PRO GLU GLU LYS LYS SEQRES 5 C 171 TYR LEU ILE GLU GLU ALA THR LYS GLU MET PRO ASN VAL SEQRES 6 C 171 ARG VAL ILE MET GLN GLU THR GLN LEU THR VAL GLU SER SEQRES 7 C 171 ALA LYS SER LEU GLY ALA ASN PHE LEU ILE ARG GLY ILE SEQRES 8 C 171 ARG ASN VAL LYS ASP TYR GLU TYR GLU LYS ASP ILE ALA SEQRES 9 C 171 LYS MET ASN GLN HIS LEU ALA PRO GLU ILE GLU THR VAL SEQRES 10 C 171 PHE LEU LEU ALA GLU GLU PRO TYR ALA HIS VAL SER SER SEQRES 11 C 171 SER LEU LEU LYS GLU VAL LEU ARG PHE GLY GLY ASP VAL SEQRES 12 C 171 SER ASP TYR LEU PRO PRO ASN ILE TYR HIS ALA LEU LYS SEQRES 13 C 171 GLN LYS LYS ASN ASP TRP SER LEU GLU HIS HIS HIS HIS SEQRES 14 C 171 HIS HIS SEQRES 1 D 171 MET ARG LYS ILE ALA LEU PHE PRO GLY SER PHE ASP PRO SEQRES 2 D 171 MET THR ASN GLY HIS LEU ASN LEU ILE GLU ARG SER ALA SEQRES 3 D 171 LYS LEU PHE ASP GLU VAL ILE ILE GLY VAL PHE ILE ASN SEQRES 4 D 171 THR SER LYS GLN THR LEU PHE THR PRO GLU GLU LYS LYS SEQRES 5 D 171 TYR LEU ILE GLU GLU ALA THR LYS GLU MET PRO ASN VAL SEQRES 6 D 171 ARG VAL ILE MET GLN GLU THR GLN LEU THR VAL GLU SER SEQRES 7 D 171 ALA LYS SER LEU GLY ALA ASN PHE LEU ILE ARG GLY ILE SEQRES 8 D 171 ARG ASN VAL LYS ASP TYR GLU TYR GLU LYS ASP ILE ALA SEQRES 9 D 171 LYS MET ASN GLN HIS LEU ALA PRO GLU ILE GLU THR VAL SEQRES 10 D 171 PHE LEU LEU ALA GLU GLU PRO TYR ALA HIS VAL SER SER SEQRES 11 D 171 SER LEU LEU LYS GLU VAL LEU ARG PHE GLY GLY ASP VAL SEQRES 12 D 171 SER ASP TYR LEU PRO PRO ASN ILE TYR HIS ALA LEU LYS SEQRES 13 D 171 GLN LYS LYS ASN ASP TRP SER LEU GLU HIS HIS HIS HIS SEQRES 14 D 171 HIS HIS SEQRES 1 E 171 MET ARG LYS ILE ALA LEU PHE PRO GLY SER PHE ASP PRO SEQRES 2 E 171 MET THR ASN GLY HIS LEU ASN LEU ILE GLU ARG SER ALA SEQRES 3 E 171 LYS LEU PHE ASP GLU VAL ILE ILE GLY VAL PHE ILE ASN SEQRES 4 E 171 THR SER LYS GLN THR LEU PHE THR PRO GLU GLU LYS LYS SEQRES 5 E 171 TYR LEU ILE GLU GLU ALA THR LYS GLU MET PRO ASN VAL SEQRES 6 E 171 ARG VAL ILE MET GLN GLU THR GLN LEU THR VAL GLU SER SEQRES 7 E 171 ALA LYS SER LEU GLY ALA ASN PHE LEU ILE ARG GLY ILE SEQRES 8 E 171 ARG ASN VAL LYS ASP TYR GLU TYR GLU LYS ASP ILE ALA SEQRES 9 E 171 LYS MET ASN GLN HIS LEU ALA PRO GLU ILE GLU THR VAL SEQRES 10 E 171 PHE LEU LEU ALA GLU GLU PRO TYR ALA HIS VAL SER SER SEQRES 11 E 171 SER LEU LEU LYS GLU VAL LEU ARG PHE GLY GLY ASP VAL SEQRES 12 E 171 SER ASP TYR LEU PRO PRO ASN ILE TYR HIS ALA LEU LYS SEQRES 13 E 171 GLN LYS LYS ASN ASP TRP SER LEU GLU HIS HIS HIS HIS SEQRES 14 E 171 HIS HIS SEQRES 1 F 171 MET ARG LYS ILE ALA LEU PHE PRO GLY SER PHE ASP PRO SEQRES 2 F 171 MET THR ASN GLY HIS LEU ASN LEU ILE GLU ARG SER ALA SEQRES 3 F 171 LYS LEU PHE ASP GLU VAL ILE ILE GLY VAL PHE ILE ASN SEQRES 4 F 171 THR SER LYS GLN THR LEU PHE THR PRO GLU GLU LYS LYS SEQRES 5 F 171 TYR LEU ILE GLU GLU ALA THR LYS GLU MET PRO ASN VAL SEQRES 6 F 171 ARG VAL ILE MET GLN GLU THR GLN LEU THR VAL GLU SER SEQRES 7 F 171 ALA LYS SER LEU GLY ALA ASN PHE LEU ILE ARG GLY ILE SEQRES 8 F 171 ARG ASN VAL LYS ASP TYR GLU TYR GLU LYS ASP ILE ALA SEQRES 9 F 171 LYS MET ASN GLN HIS LEU ALA PRO GLU ILE GLU THR VAL SEQRES 10 F 171 PHE LEU LEU ALA GLU GLU PRO TYR ALA HIS VAL SER SER SEQRES 11 F 171 SER LEU LEU LYS GLU VAL LEU ARG PHE GLY GLY ASP VAL SEQRES 12 F 171 SER ASP TYR LEU PRO PRO ASN ILE TYR HIS ALA LEU LYS SEQRES 13 F 171 GLN LYS LYS ASN ASP TRP SER LEU GLU HIS HIS HIS HIS SEQRES 14 F 171 HIS HIS FORMUL 7 HOH *534(H2 O) HELIX 1 1 THR A 15 LYS A 27 1 13 HELIX 2 2 THR A 47 LYS A 60 1 14 HELIX 3 3 LEU A 74 GLY A 83 1 10 HELIX 4 4 ASN A 93 ALA A 111 1 19 HELIX 5 5 GLU A 122 ALA A 126 5 5 HELIX 6 6 SER A 129 PHE A 139 1 11 HELIX 7 7 VAL A 143 LEU A 147 5 5 HELIX 8 8 PRO A 148 LYS A 158 1 11 HELIX 9 9 THR B 15 ALA B 26 1 12 HELIX 10 10 THR B 47 THR B 59 1 13 HELIX 11 11 LEU B 74 LEU B 82 1 9 HELIX 12 12 ASN B 93 ALA B 111 1 19 HELIX 13 13 SER B 129 PHE B 139 1 11 HELIX 14 14 VAL B 143 LEU B 147 5 5 HELIX 15 15 PRO B 148 GLN B 157 1 10 HELIX 16 16 THR C 15 LYS C 27 1 13 HELIX 17 17 THR C 47 LYS C 60 1 14 HELIX 18 18 LEU C 74 LEU C 82 1 9 HELIX 19 19 ASN C 93 ALA C 111 1 19 HELIX 20 20 GLU C 122 ALA C 126 5 5 HELIX 21 21 SER C 129 PHE C 139 1 11 HELIX 22 22 VAL C 143 LEU C 147 5 5 HELIX 23 23 PRO C 148 LYS C 158 1 11 HELIX 24 24 THR D 15 LYS D 27 1 13 HELIX 25 25 THR D 47 LYS D 60 1 14 HELIX 26 26 LEU D 74 LEU D 82 1 9 HELIX 27 27 ASN D 93 ALA D 111 1 19 HELIX 28 28 GLU D 122 ALA D 126 5 5 HELIX 29 29 SER D 129 PHE D 139 1 11 HELIX 30 30 VAL D 143 LEU D 147 5 5 HELIX 31 31 PRO D 148 LEU D 155 1 8 HELIX 32 32 THR E 15 LYS E 27 1 13 HELIX 33 33 THR E 47 LYS E 60 1 14 HELIX 34 34 LEU E 74 GLY E 83 1 10 HELIX 35 35 ASN E 93 ALA E 111 1 19 HELIX 36 36 SER E 129 ARG E 138 1 10 HELIX 37 37 VAL E 143 LEU E 147 5 5 HELIX 38 38 PRO E 148 LYS E 156 1 9 HELIX 39 39 THR F 15 PHE F 29 1 15 HELIX 40 40 THR F 47 THR F 59 1 13 HELIX 41 41 LEU F 74 GLY F 83 1 10 HELIX 42 42 ASN F 93 ALA F 111 1 19 HELIX 43 43 GLU F 122 ALA F 126 5 5 HELIX 44 44 SER F 129 PHE F 139 1 11 HELIX 45 45 VAL F 143 LEU F 147 5 5 HELIX 46 46 PRO F 148 ALA F 154 1 7 SHEET 1 A 5 VAL A 65 GLU A 71 0 SHEET 2 A 5 GLU A 31 ILE A 38 1 N ILE A 34 O ARG A 66 SHEET 3 A 5 ILE A 4 GLY A 9 1 N ALA A 5 O ILE A 33 SHEET 4 A 5 PHE A 86 ILE A 91 1 O ILE A 88 N LEU A 6 SHEET 5 A 5 GLU A 115 LEU A 120 1 O VAL A 117 N LEU A 87 SHEET 1 B 5 VAL B 65 GLU B 71 0 SHEET 2 B 5 GLU B 31 ILE B 38 1 N ILE B 34 O ARG B 66 SHEET 3 B 5 ILE B 4 GLY B 9 1 N PHE B 7 O ILE B 33 SHEET 4 B 5 PHE B 86 ILE B 91 1 O PHE B 86 N LEU B 6 SHEET 5 B 5 GLU B 115 LEU B 120 1 O VAL B 117 N LEU B 87 SHEET 1 C 5 VAL C 65 GLU C 71 0 SHEET 2 C 5 GLU C 31 ILE C 38 1 N ILE C 34 O ARG C 66 SHEET 3 C 5 ILE C 4 GLY C 9 1 N PHE C 7 O ILE C 33 SHEET 4 C 5 PHE C 86 ILE C 91 1 O PHE C 86 N LEU C 6 SHEET 5 C 5 GLU C 115 LEU C 120 1 O GLU C 115 N LEU C 87 SHEET 1 D 5 VAL D 65 GLU D 71 0 SHEET 2 D 5 GLU D 31 ILE D 38 1 N ILE D 34 O ARG D 66 SHEET 3 D 5 ILE D 4 GLY D 9 1 N ALA D 5 O ILE D 33 SHEET 4 D 5 PHE D 86 ILE D 91 1 O PHE D 86 N LEU D 6 SHEET 5 D 5 GLU D 115 LEU D 120 1 O VAL D 117 N LEU D 87 SHEET 1 E 5 VAL E 65 GLU E 71 0 SHEET 2 E 5 GLU E 31 ILE E 38 1 N ILE E 34 O ARG E 66 SHEET 3 E 5 ILE E 4 GLY E 9 1 N ALA E 5 O ILE E 33 SHEET 4 E 5 PHE E 86 ILE E 91 1 O ILE E 88 N LEU E 6 SHEET 5 E 5 GLU E 115 LEU E 120 1 O VAL E 117 N LEU E 87 SHEET 1 F 5 VAL F 65 GLU F 71 0 SHEET 2 F 5 GLU F 31 ILE F 38 1 N ILE F 34 O ARG F 66 SHEET 3 F 5 ILE F 4 GLY F 9 1 N ALA F 5 O ILE F 33 SHEET 4 F 5 PHE F 86 ILE F 91 1 O PHE F 86 N LEU F 6 SHEET 5 F 5 GLU F 115 LEU F 120 1 O VAL F 117 N LEU F 87 CISPEP 1 ASP A 12 PRO A 13 0 4.16 CISPEP 2 ASP B 12 PRO B 13 0 -2.91 CISPEP 3 ASP C 12 PRO C 13 0 4.28 CISPEP 4 ASP D 12 PRO D 13 0 -2.15 CISPEP 5 ASP E 12 PRO E 13 0 -2.30 CISPEP 6 ASP F 12 PRO F 13 0 -6.23 CRYST1 110.198 125.683 125.821 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009075 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007948 0.00000