data_3NDX # _entry.id 3NDX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NDX pdb_00003ndx 10.2210/pdb3ndx/pdb RCSB RCSB059707 ? ? WWPDB D_1000059707 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-20 2 'Structure model' 1 1 2011-12-07 3 'Structure model' 1 2 2012-12-12 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NDX _pdbx_database_status.recvd_initial_deposition_date 2010-06-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Geremia, S.' 1 'Olajuyigbe, F.M.' 2 'Demitri, N.' 3 # _citation.id primary _citation.title ;Investigation of 2-Fold Disorder of Inhibitors and Relative Potency by Crystallizations of HIV-1 Protease in Ritonavir and Saquinavir Mixtures ; _citation.journal_abbrev 'Cryst.Growth Des.' _citation.journal_volume 11 _citation.page_first 4378 _citation.page_last 4385 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1528-7483 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI 10.1021/cg200514z # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Olajuyigbe, F.M.' 1 ? primary 'Demitri, N.' 2 ? primary 'Geremia, S.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Protease 10740.677 2 3.4.23.16 ? ? ? 2 non-polymer syn RITONAVIR 720.944 1 ? ? ? ? 3 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 4 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 5 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 6 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 7 water nat water 18.015 256 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 RITONAVIR RIT 3 'DIMETHYL SULFOXIDE' DMS 4 GLYCEROL GOL 5 'CHLORIDE ION' CL 6 'SULFATE ION' SO4 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 ILE n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 ILE n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 ALA n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 ALA n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RIT peptide-like . RITONAVIR A-84538 'C37 H48 N6 O5 S2' 720.944 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 GLN 2 2 2 GLN GLN B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 TRP 6 6 6 TRP TRP B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 ARG 8 8 8 ARG ARG B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 VAL 11 11 11 VAL VAL B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 MET 36 36 36 MET MET B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 LEU 38 38 38 LEU LEU B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 TRP 42 42 42 TRP TRP B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 PRO 44 44 44 PRO PRO B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 MET 46 46 46 MET MET B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 PHE 53 53 53 PHE PHE B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 ARG 57 57 57 ARG ARG B . n B 1 58 GLN 58 58 58 GLN GLN B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 GLN 61 61 61 GLN GLN B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 ILE 63 63 63 ILE ILE B . n B 1 64 ILE 64 64 64 ILE ILE B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 ALA 67 67 67 ALA ALA B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 PRO 81 81 81 PRO PRO B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 ASN 88 88 88 ASN ASN B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 GLN 92 92 92 GLN GLN B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 ALA 95 95 95 ALA ALA B . n B 1 96 THR 96 96 96 THR THR B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 PHE 99 99 99 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RIT 1 100 100 RIT RIT A . D 3 DMS 1 991 991 DMS DMS A . E 4 GOL 1 1041 1041 GOL GOL A . F 5 CL 1 308 308 CL CL A . G 6 SO4 1 100 100 SO4 SO4 B . H 4 GOL 1 101 101 GOL GOL B . I 3 DMS 1 992 992 DMS DMS B . J 3 DMS 1 993 993 DMS DMS B . K 3 DMS 1 994 994 DMS DMS B . L 6 SO4 1 1040 1040 SO4 SO4 B . M 7 HOH 1 101 101 HOH HOH A . M 7 HOH 2 102 102 HOH HOH A . M 7 HOH 3 103 103 HOH HOH A . M 7 HOH 4 104 104 HOH HOH A . M 7 HOH 5 105 105 HOH HOH A . M 7 HOH 6 106 106 HOH HOH A . M 7 HOH 7 107 107 HOH HOH A . M 7 HOH 8 108 108 HOH HOH A . M 7 HOH 9 109 109 HOH HOH A . M 7 HOH 10 110 110 HOH HOH A . M 7 HOH 11 111 111 HOH HOH A . M 7 HOH 12 112 112 HOH HOH A . M 7 HOH 13 113 113 HOH HOH A . M 7 HOH 14 114 114 HOH HOH A . M 7 HOH 15 115 115 HOH HOH A . M 7 HOH 16 116 116 HOH HOH A . M 7 HOH 17 117 117 HOH HOH A . M 7 HOH 18 118 118 HOH HOH A . M 7 HOH 19 119 119 HOH HOH A . M 7 HOH 20 120 120 HOH HOH A . M 7 HOH 21 121 121 HOH HOH A . M 7 HOH 22 122 122 HOH HOH A . M 7 HOH 23 123 123 HOH HOH A . M 7 HOH 24 124 124 HOH HOH A . M 7 HOH 25 125 125 HOH HOH A . M 7 HOH 26 126 126 HOH HOH A . M 7 HOH 27 127 127 HOH HOH A . M 7 HOH 28 128 128 HOH HOH A . M 7 HOH 29 129 129 HOH HOH A . M 7 HOH 30 130 130 HOH HOH A . M 7 HOH 31 131 131 HOH HOH A . M 7 HOH 32 132 132 HOH HOH A . M 7 HOH 33 133 133 HOH HOH A . M 7 HOH 34 134 134 HOH HOH A . M 7 HOH 35 135 135 HOH HOH A . M 7 HOH 36 136 136 HOH HOH A . M 7 HOH 37 137 137 HOH HOH A . M 7 HOH 38 138 138 HOH HOH A . M 7 HOH 39 139 139 HOH HOH A . M 7 HOH 40 140 140 HOH HOH A . M 7 HOH 41 141 141 HOH HOH A . M 7 HOH 42 142 142 HOH HOH A . M 7 HOH 43 143 143 HOH HOH A . M 7 HOH 44 144 144 HOH HOH A . M 7 HOH 45 145 145 HOH HOH A . M 7 HOH 46 146 146 HOH HOH A . M 7 HOH 47 147 147 HOH HOH A . M 7 HOH 48 148 148 HOH HOH A . M 7 HOH 49 149 149 HOH HOH A . M 7 HOH 50 150 150 HOH HOH A . M 7 HOH 51 151 151 HOH HOH A . M 7 HOH 52 152 152 HOH HOH A . M 7 HOH 53 153 153 HOH HOH A . M 7 HOH 54 154 154 HOH HOH A . M 7 HOH 55 155 155 HOH HOH A . M 7 HOH 56 156 156 HOH HOH A . M 7 HOH 57 157 157 HOH HOH A . M 7 HOH 58 158 158 HOH HOH A . M 7 HOH 59 159 159 HOH HOH A . M 7 HOH 60 160 160 HOH HOH A . M 7 HOH 61 161 161 HOH HOH A . M 7 HOH 62 162 162 HOH HOH A . M 7 HOH 63 163 163 HOH HOH A . M 7 HOH 64 164 164 HOH HOH A . M 7 HOH 65 165 165 HOH HOH A . M 7 HOH 66 166 166 HOH HOH A . M 7 HOH 67 167 167 HOH HOH A . M 7 HOH 68 168 168 HOH HOH A . M 7 HOH 69 170 170 HOH HOH A . M 7 HOH 70 171 171 HOH HOH A . M 7 HOH 71 172 172 HOH HOH A . M 7 HOH 72 174 174 HOH HOH A . M 7 HOH 73 175 175 HOH HOH A . M 7 HOH 74 176 176 HOH HOH A . M 7 HOH 75 177 177 HOH HOH A . M 7 HOH 76 184 184 HOH HOH A . M 7 HOH 77 190 190 HOH HOH A . M 7 HOH 78 191 191 HOH HOH A . M 7 HOH 79 193 193 HOH HOH A . M 7 HOH 80 201 201 HOH HOH A . M 7 HOH 81 209 209 HOH HOH A . M 7 HOH 82 210 210 HOH HOH A . M 7 HOH 83 216 216 HOH HOH A . M 7 HOH 84 217 217 HOH HOH A . M 7 HOH 85 218 218 HOH HOH A . M 7 HOH 86 219 219 HOH HOH A . M 7 HOH 87 220 220 HOH HOH A . M 7 HOH 88 223 223 HOH HOH A . M 7 HOH 89 224 224 HOH HOH A . M 7 HOH 90 229 229 HOH HOH A . M 7 HOH 91 230 230 HOH HOH A . M 7 HOH 92 231 231 HOH HOH A . M 7 HOH 93 234 234 HOH HOH A . M 7 HOH 94 239 239 HOH HOH A . M 7 HOH 95 241 241 HOH HOH A . M 7 HOH 96 242 242 HOH HOH A . M 7 HOH 97 244 244 HOH HOH A . M 7 HOH 98 245 245 HOH HOH A . M 7 HOH 99 248 248 HOH HOH A . M 7 HOH 100 249 249 HOH HOH A . M 7 HOH 101 253 253 HOH HOH A . M 7 HOH 102 254 254 HOH HOH A . M 7 HOH 103 255 255 HOH HOH A . M 7 HOH 104 259 259 HOH HOH A . M 7 HOH 105 260 260 HOH HOH A . M 7 HOH 106 265 265 HOH HOH A . M 7 HOH 107 267 267 HOH HOH A . M 7 HOH 108 269 269 HOH HOH A . M 7 HOH 109 271 271 HOH HOH A . M 7 HOH 110 273 273 HOH HOH A . M 7 HOH 111 277 277 HOH HOH A . M 7 HOH 112 279 279 HOH HOH A . M 7 HOH 113 282 282 HOH HOH A . M 7 HOH 114 289 289 HOH HOH A . M 7 HOH 115 290 290 HOH HOH A . M 7 HOH 116 296 296 HOH HOH A . M 7 HOH 117 302 302 HOH HOH A . M 7 HOH 118 303 303 HOH HOH A . M 7 HOH 119 305 305 HOH HOH A . M 7 HOH 120 306 306 HOH HOH A . M 7 HOH 121 311 311 HOH HOH A . M 7 HOH 122 315 315 HOH HOH A . M 7 HOH 123 318 318 HOH HOH A . M 7 HOH 124 322 322 HOH HOH A . M 7 HOH 125 323 323 HOH HOH A . M 7 HOH 126 325 325 HOH HOH A . M 7 HOH 127 327 327 HOH HOH A . M 7 HOH 128 334 334 HOH HOH A . M 7 HOH 129 335 335 HOH HOH A . M 7 HOH 130 338 338 HOH HOH A . M 7 HOH 131 340 340 HOH HOH A . N 7 HOH 1 102 102 HOH HOH B . N 7 HOH 2 103 103 HOH HOH B . N 7 HOH 3 104 104 HOH HOH B . N 7 HOH 4 105 105 HOH HOH B . N 7 HOH 5 106 106 HOH HOH B . N 7 HOH 6 107 107 HOH HOH B . N 7 HOH 7 108 108 HOH HOH B . N 7 HOH 8 109 109 HOH HOH B . N 7 HOH 9 110 110 HOH HOH B . N 7 HOH 10 111 111 HOH HOH B . N 7 HOH 11 112 112 HOH HOH B . N 7 HOH 12 113 113 HOH HOH B . N 7 HOH 13 114 114 HOH HOH B . N 7 HOH 14 115 115 HOH HOH B . N 7 HOH 15 116 116 HOH HOH B . N 7 HOH 16 117 117 HOH HOH B . N 7 HOH 17 118 118 HOH HOH B . N 7 HOH 18 119 119 HOH HOH B . N 7 HOH 19 120 120 HOH HOH B . N 7 HOH 20 121 121 HOH HOH B . N 7 HOH 21 122 122 HOH HOH B . N 7 HOH 22 123 123 HOH HOH B . N 7 HOH 23 124 124 HOH HOH B . N 7 HOH 24 125 125 HOH HOH B . N 7 HOH 25 126 126 HOH HOH B . N 7 HOH 26 127 127 HOH HOH B . N 7 HOH 27 128 128 HOH HOH B . N 7 HOH 28 129 129 HOH HOH B . N 7 HOH 29 130 130 HOH HOH B . N 7 HOH 30 131 131 HOH HOH B . N 7 HOH 31 132 132 HOH HOH B . N 7 HOH 32 133 133 HOH HOH B . N 7 HOH 33 134 134 HOH HOH B . N 7 HOH 34 135 135 HOH HOH B . N 7 HOH 35 136 136 HOH HOH B . N 7 HOH 36 137 137 HOH HOH B . N 7 HOH 37 138 138 HOH HOH B . N 7 HOH 38 139 139 HOH HOH B . N 7 HOH 39 140 140 HOH HOH B . N 7 HOH 40 141 141 HOH HOH B . N 7 HOH 41 142 142 HOH HOH B . N 7 HOH 42 143 143 HOH HOH B . N 7 HOH 43 144 144 HOH HOH B . N 7 HOH 44 145 145 HOH HOH B . N 7 HOH 45 146 146 HOH HOH B . N 7 HOH 46 147 147 HOH HOH B . N 7 HOH 47 148 148 HOH HOH B . N 7 HOH 48 149 149 HOH HOH B . N 7 HOH 49 150 150 HOH HOH B . N 7 HOH 50 151 151 HOH HOH B . N 7 HOH 51 152 152 HOH HOH B . N 7 HOH 52 153 153 HOH HOH B . N 7 HOH 53 154 154 HOH HOH B . N 7 HOH 54 155 155 HOH HOH B . N 7 HOH 55 156 156 HOH HOH B . N 7 HOH 56 157 157 HOH HOH B . N 7 HOH 57 158 158 HOH HOH B . N 7 HOH 58 159 159 HOH HOH B . N 7 HOH 59 160 160 HOH HOH B . N 7 HOH 60 161 161 HOH HOH B . N 7 HOH 61 162 162 HOH HOH B . N 7 HOH 62 163 163 HOH HOH B . N 7 HOH 63 164 164 HOH HOH B . N 7 HOH 64 165 165 HOH HOH B . N 7 HOH 65 166 166 HOH HOH B . N 7 HOH 66 167 167 HOH HOH B . N 7 HOH 67 168 168 HOH HOH B . N 7 HOH 68 169 169 HOH HOH B . N 7 HOH 69 170 170 HOH HOH B . N 7 HOH 70 171 171 HOH HOH B . N 7 HOH 71 172 172 HOH HOH B . N 7 HOH 72 173 173 HOH HOH B . N 7 HOH 73 174 174 HOH HOH B . N 7 HOH 74 175 175 HOH HOH B . N 7 HOH 75 176 176 HOH HOH B . N 7 HOH 76 177 177 HOH HOH B . N 7 HOH 77 178 178 HOH HOH B . N 7 HOH 78 179 179 HOH HOH B . N 7 HOH 79 180 180 HOH HOH B . N 7 HOH 80 181 181 HOH HOH B . N 7 HOH 81 182 182 HOH HOH B . N 7 HOH 82 183 183 HOH HOH B . N 7 HOH 83 184 184 HOH HOH B . N 7 HOH 84 185 185 HOH HOH B . N 7 HOH 85 186 186 HOH HOH B . N 7 HOH 86 187 187 HOH HOH B . N 7 HOH 87 188 188 HOH HOH B . N 7 HOH 88 189 189 HOH HOH B . N 7 HOH 89 195 195 HOH HOH B . N 7 HOH 90 196 196 HOH HOH B . N 7 HOH 91 197 197 HOH HOH B . N 7 HOH 92 203 203 HOH HOH B . N 7 HOH 93 205 205 HOH HOH B . N 7 HOH 94 214 214 HOH HOH B . N 7 HOH 95 215 215 HOH HOH B . N 7 HOH 96 221 221 HOH HOH B . N 7 HOH 97 222 222 HOH HOH B . N 7 HOH 98 226 226 HOH HOH B . N 7 HOH 99 227 227 HOH HOH B . N 7 HOH 100 228 228 HOH HOH B . N 7 HOH 101 232 232 HOH HOH B . N 7 HOH 102 235 235 HOH HOH B . N 7 HOH 103 237 237 HOH HOH B . N 7 HOH 104 238 238 HOH HOH B . N 7 HOH 105 240 240 HOH HOH B . N 7 HOH 106 243 243 HOH HOH B . N 7 HOH 107 251 251 HOH HOH B . N 7 HOH 108 257 257 HOH HOH B . N 7 HOH 109 261 261 HOH HOH B . N 7 HOH 110 272 272 HOH HOH B . N 7 HOH 111 280 280 HOH HOH B . N 7 HOH 112 283 283 HOH HOH B . N 7 HOH 113 284 284 HOH HOH B . N 7 HOH 114 293 293 HOH HOH B . N 7 HOH 115 304 304 HOH HOH B . N 7 HOH 116 307 307 HOH HOH B . N 7 HOH 117 312 312 HOH HOH B . N 7 HOH 118 313 313 HOH HOH B . N 7 HOH 119 314 314 HOH HOH B . N 7 HOH 120 328 328 HOH HOH B . N 7 HOH 121 331 331 HOH HOH B . N 7 HOH 122 336 336 HOH HOH B . N 7 HOH 123 337 337 HOH HOH B . N 7 HOH 124 341 341 HOH HOH B . N 7 HOH 125 342 342 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SHELX 'model building' . ? 2 SHELXL-97 refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 SHELX phasing . ? 6 # _cell.entry_id 3NDX _cell.length_a 51.160 _cell.length_b 58.567 _cell.length_c 61.143 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NDX _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3NDX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 42.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'AMMONIUM SULFATE, DMSO, SODIUM CITRATE, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2008-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.2 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.2 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3NDX _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 10.00 _reflns.d_resolution_high 1.03 _reflns.number_obs 71030 _reflns.number_all 82398 _reflns.percent_possible_obs 90.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3NDX _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 82467 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.03 _refine.ls_percent_reflns_obs 90.4 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.1325 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 18490 _refine.ls_number_restraints 24561 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY ?' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct 'AB INITIO' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_ESU_R ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 3NDX _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 61 _refine_analyze.occupancy_sum_hydrogen 0.00 _refine_analyze.occupancy_sum_non_hydrogen 1853.76 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1512 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 89 _refine_hist.number_atoms_solvent 256 _refine_hist.number_atoms_total 1857 _refine_hist.d_res_high 1.03 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.036 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0354 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.091 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.128 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.025 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.055 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.090 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 3NDX _pdbx_refine.R_factor_all_no_cutoff 0.1325 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1258 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 71099 # _database_PDB_matrix.entry_id 3NDX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 3NDX _struct.title 'HIV-1 Protease Saquinavir:Ritonavir 1:50 complex structure' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NDX _struct_keywords.pdbx_keywords 'hydrolase/hydrolase inhibitor' _struct_keywords.text 'HIV-1 PROTEASE, HYDROLASE, AIDS, ASPARTYL PROTEASE, SAQUINAVIR, CARBAMYLATION, hydrolase-hydrolase inhibitor complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 4 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 6 ? M N N 7 ? N N N 7 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7SSI0_9HIV1 _struct_ref.pdbx_db_accession Q7SSI0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGSTLNF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NDX A 1 ? 99 ? Q7SSI0 1 ? 99 ? 1 99 2 1 3NDX B 1 ? 99 ? Q7SSI0 1 ? 99 ? 1 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NDX LYS A 7 ? UNP Q7SSI0 GLN 7 'engineered mutation' 7 1 1 3NDX ILE A 33 ? UNP Q7SSI0 LEU 33 'engineered mutation' 33 2 1 3NDX ILE A 63 ? UNP Q7SSI0 LEU 63 'engineered mutation' 63 3 1 3NDX ALA A 67 ? UNP Q7SSI0 CYS 67 'engineered mutation' 67 4 1 3NDX ALA A 95 ? UNP Q7SSI0 SER 95 'engineered mutation' 95 5 2 3NDX LYS B 7 ? UNP Q7SSI0 GLN 7 'engineered mutation' 7 6 2 3NDX ILE B 33 ? UNP Q7SSI0 LEU 33 'engineered mutation' 33 7 2 3NDX ILE B 63 ? UNP Q7SSI0 LEU 63 'engineered mutation' 63 8 2 3NDX ALA B 67 ? UNP Q7SSI0 CYS 67 'engineered mutation' 67 9 2 3NDX ALA B 95 ? UNP Q7SSI0 SER 95 'engineered mutation' 95 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6700 ? 1 MORE -68 ? 1 'SSA (A^2)' 9600 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLY B 86 ? THR B 91 ? GLY B 86 THR B 91 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 96 ASN B 98 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 2 ILE B 3 B 1 LYS A 43 ? GLY A 49 ? LYS A 43 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? GLY A 78 ? HIS A 69 GLY A 78 B 4 VAL A 32 ? GLU A 34 ? VAL A 32 GLU A 34 B 5 ASN A 83 ? ILE A 85 ? ASN A 83 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 TRP B 42 ? GLY B 49 ? TRP B 42 GLY B 49 C 2 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 C 3 HIS B 69 ? VAL B 77 ? HIS B 69 VAL B 77 C 4 VAL B 32 ? ILE B 33 ? VAL B 32 ILE B 33 C 5 ILE B 84 ? ILE B 85 ? ILE B 84 ILE B 85 C 6 GLN B 18 ? LEU B 24 ? GLN B 18 LEU B 24 C 7 LEU B 10 ? ILE B 15 ? LEU B 10 ILE B 15 C 8 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 97 A 2 3 O ASN B 98 ? O ASN B 98 N THR A 96 ? N THR A 96 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 3 B 1 2 N LYS A 43 ? N LYS A 43 O GLN A 58 ? O GLN A 58 B 2 3 N ILE A 66 ? N ILE A 66 O HIS A 69 ? O HIS A 69 B 3 4 O LEU A 76 ? O LEU A 76 N ILE A 33 ? N ILE A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ASN A 83 ? O ASN A 83 N LEU A 23 ? N LEU A 23 B 6 7 O LYS A 20 ? O LYS A 20 N ILE A 13 ? N ILE A 13 B 7 8 N LYS A 14 ? N LYS A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS B 43 ? N LYS B 43 O GLN B 58 ? O GLN B 58 C 2 3 N ILE B 66 ? N ILE B 66 O HIS B 69 ? O HIS B 69 C 3 4 O LEU B 76 ? O LEU B 76 N ILE B 33 ? N ILE B 33 C 4 5 N VAL B 32 ? N VAL B 32 O ILE B 84 ? O ILE B 84 C 5 6 O ILE B 85 ? O ILE B 85 N LEU B 23 ? N LEU B 23 C 6 7 O LYS B 20 ? O LYS B 20 N ILE B 13 ? N ILE B 13 C 7 8 N LYS B 14 ? N LYS B 14 O GLU B 65 ? O GLU B 65 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A RIT 100 ? 26 'BINDING SITE FOR RESIDUE RIT A 100' AC2 Software A DMS 991 ? 7 'BINDING SITE FOR RESIDUE DMS A 991' AC3 Software A GOL 1041 ? 9 'BINDING SITE FOR RESIDUE GOL A 1041' AC4 Software A CL 308 ? 4 'BINDING SITE FOR RESIDUE CL A 308' AC5 Software B SO4 100 ? 6 'BINDING SITE FOR RESIDUE SO4 B 100' AC6 Software B GOL 101 ? 8 'BINDING SITE FOR RESIDUE GOL B 101' AC7 Software B DMS 992 ? 7 'BINDING SITE FOR RESIDUE DMS B 992' AC8 Software B DMS 993 ? 9 'BINDING SITE FOR RESIDUE DMS B 993' AC9 Software B DMS 994 ? 7 'BINDING SITE FOR RESIDUE DMS B 994' BC1 Software B SO4 1040 ? 7 'BINDING SITE FOR RESIDUE SO4 B 1040' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 26 ARG A 8 ? ARG A 8 . ? 1_555 ? 2 AC1 26 ASP A 25 ? ASP A 25 . ? 1_555 ? 3 AC1 26 GLY A 27 ? GLY A 27 . ? 1_555 ? 4 AC1 26 ALA A 28 ? ALA A 28 . ? 1_555 ? 5 AC1 26 ASP A 29 ? ASP A 29 . ? 1_555 ? 6 AC1 26 ASP A 30 ? ASP A 30 . ? 1_555 ? 7 AC1 26 GLY A 48 ? GLY A 48 . ? 1_555 ? 8 AC1 26 GLY A 49 ? GLY A 49 . ? 1_555 ? 9 AC1 26 ILE A 50 ? ILE A 50 . ? 1_555 ? 10 AC1 26 PRO A 81 ? PRO A 81 . ? 1_555 ? 11 AC1 26 HOH M . ? HOH A 110 . ? 1_555 ? 12 AC1 26 HOH M . ? HOH A 164 . ? 1_555 ? 13 AC1 26 HOH M . ? HOH A 216 . ? 1_555 ? 14 AC1 26 GOL E . ? GOL A 1041 . ? 1_555 ? 15 AC1 26 ASP B 25 ? ASP B 25 . ? 1_555 ? 16 AC1 26 GLY B 27 ? GLY B 27 . ? 1_555 ? 17 AC1 26 ALA B 28 ? ALA B 28 . ? 1_555 ? 18 AC1 26 ASP B 29 ? ASP B 29 . ? 1_555 ? 19 AC1 26 ILE B 47 ? ILE B 47 . ? 1_555 ? 20 AC1 26 GLY B 48 ? GLY B 48 . ? 1_555 ? 21 AC1 26 GLY B 49 ? GLY B 49 . ? 1_555 ? 22 AC1 26 ILE B 50 ? ILE B 50 . ? 1_555 ? 23 AC1 26 VAL B 82 ? VAL B 82 . ? 1_555 ? 24 AC1 26 ILE B 84 ? ILE B 84 . ? 1_555 ? 25 AC1 26 HOH N . ? HOH B 125 . ? 1_555 ? 26 AC1 26 HOH N . ? HOH B 221 . ? 1_555 ? 27 AC2 7 GLN A 92 ? GLN A 92 . ? 1_555 ? 28 AC2 7 HOH M . ? HOH A 170 . ? 1_555 ? 29 AC2 7 HOH M . ? HOH A 210 . ? 1_555 ? 30 AC2 7 GLY B 49 ? GLY B 49 . ? 2_655 ? 31 AC2 7 GLY B 52 ? GLY B 52 . ? 2_655 ? 32 AC2 7 PHE B 53 ? PHE B 53 . ? 2_655 ? 33 AC2 7 HOH N . ? HOH B 171 . ? 2_655 ? 34 AC3 9 TRP A 6 ? TRP A 6 . ? 3_645 ? 35 AC3 9 GLY A 48 ? GLY A 48 . ? 1_555 ? 36 AC3 9 RIT C . ? RIT A 100 . ? 1_555 ? 37 AC3 9 HOH M . ? HOH A 122 . ? 1_555 ? 38 AC3 9 HOH M . ? HOH A 145 . ? 1_555 ? 39 AC3 9 HOH M . ? HOH A 171 . ? 1_555 ? 40 AC3 9 HOH M . ? HOH A 277 . ? 3_645 ? 41 AC3 9 PRO B 81 ? PRO B 81 . ? 1_555 ? 42 AC3 9 HOH N . ? HOH B 123 . ? 3_645 ? 43 AC4 4 LYS A 7 ? LYS A 7 . ? 1_555 ? 44 AC4 4 ARG A 8 ? ARG A 8 . ? 1_555 ? 45 AC4 4 HOH M . ? HOH A 305 . ? 1_555 ? 46 AC4 4 HOH N . ? HOH B 307 . ? 1_555 ? 47 AC5 6 PRO B 1 ? PRO B 1 . ? 1_555 ? 48 AC5 6 ARG B 57 ? ARG B 57 . ? 2_555 ? 49 AC5 6 HIS B 69 ? HIS B 69 . ? 1_555 ? 50 AC5 6 HOH N . ? HOH B 138 . ? 1_555 ? 51 AC5 6 HOH N . ? HOH B 139 . ? 1_555 ? 52 AC5 6 HOH N . ? HOH B 284 . ? 2_555 ? 53 AC6 8 VAL B 11 ? VAL B 11 . ? 1_555 ? 54 AC6 8 THR B 12 ? THR B 12 . ? 1_555 ? 55 AC6 8 TRP B 42 ? TRP B 42 . ? 2_555 ? 56 AC6 8 ALA B 67 ? ALA B 67 . ? 1_555 ? 57 AC6 8 HOH N . ? HOH B 137 . ? 2_555 ? 58 AC6 8 HOH N . ? HOH B 176 . ? 1_555 ? 59 AC6 8 HOH N . ? HOH B 181 . ? 1_555 ? 60 AC6 8 HOH N . ? HOH B 342 . ? 1_555 ? 61 AC7 7 GLY A 17 ? GLY A 17 . ? 1_455 ? 62 AC7 7 LYS B 14 ? LYS B 14 . ? 1_555 ? 63 AC7 7 ILE B 15 ? ILE B 15 . ? 1_555 ? 64 AC7 7 GLY B 16 ? GLY B 16 . ? 1_555 ? 65 AC7 7 GLY B 17 ? GLY B 17 . ? 1_555 ? 66 AC7 7 ILE B 63 ? ILE B 63 . ? 1_555 ? 67 AC7 7 GLU B 65 ? GLU B 65 . ? 1_555 ? 68 AC8 9 PRO A 39 ? PRO A 39 . ? 1_455 ? 69 AC8 9 GLY A 40 ? GLY A 40 . ? 1_455 ? 70 AC8 9 HOH M . ? HOH A 142 . ? 1_455 ? 71 AC8 9 HOH M . ? HOH A 223 . ? 1_455 ? 72 AC8 9 HOH M . ? HOH A 323 . ? 1_455 ? 73 AC8 9 MET B 36 ? MET B 36 . ? 1_555 ? 74 AC8 9 SER B 37 ? SER B 37 . ? 1_555 ? 75 AC8 9 HOH N . ? HOH B 111 . ? 1_555 ? 76 AC8 9 HOH N . ? HOH B 172 . ? 1_555 ? 77 AC9 7 LYS A 14 ? LYS A 14 . ? 1_455 ? 78 AC9 7 ILE A 15 ? ILE A 15 . ? 1_455 ? 79 AC9 7 GLY A 16 ? GLY A 16 . ? 1_455 ? 80 AC9 7 GLY A 17 ? GLY A 17 . ? 1_455 ? 81 AC9 7 ILE A 63 ? ILE A 63 . ? 1_455 ? 82 AC9 7 HOH M . ? HOH A 271 . ? 1_455 ? 83 AC9 7 LYS B 14 ? LYS B 14 . ? 1_555 ? 84 BC1 7 PRO A 1 ? PRO A 1 . ? 4_456 ? 85 BC1 7 LYS A 55 ? LYS A 55 . ? 3_655 ? 86 BC1 7 HIS B 69 ? HIS B 69 . ? 1_555 ? 87 BC1 7 LYS B 70 ? LYS B 70 . ? 1_555 ? 88 BC1 7 HOH N . ? HOH B 170 . ? 1_555 ? 89 BC1 7 HOH N . ? HOH B 203 . ? 1_555 ? 90 BC1 7 HOH N . ? HOH B 237 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 41 ? B CZ A ARG 41 ? B NH1 A ARG 41 ? B 123.59 120.30 3.29 0.50 N 2 1 CA A ILE 50 ? A C A ILE 50 ? A N A GLY 51 ? A 130.81 116.20 14.61 2.00 Y 3 1 O A ILE 50 ? A C A ILE 50 ? A N A GLY 51 ? A 107.34 123.20 -15.86 1.70 Y 4 1 C A ILE 50 ? A N A GLY 51 ? A CA A GLY 51 ? A 106.33 122.30 -15.97 2.10 Y 5 1 NE A ARG 57 ? ? CZ A ARG 57 ? ? NH1 A ARG 57 ? ? 123.48 120.30 3.18 0.50 N # _pdbx_molecule_features.prd_id PRD_001001 _pdbx_molecule_features.name RITONAVIR _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_001001 _pdbx_molecule.asym_id C # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 DMS S S N N 89 DMS O O N N 90 DMS C1 C N N 91 DMS C2 C N N 92 DMS H11 H N N 93 DMS H12 H N N 94 DMS H13 H N N 95 DMS H21 H N N 96 DMS H22 H N N 97 DMS H23 H N N 98 GLN N N N N 99 GLN CA C N S 100 GLN C C N N 101 GLN O O N N 102 GLN CB C N N 103 GLN CG C N N 104 GLN CD C N N 105 GLN OE1 O N N 106 GLN NE2 N N N 107 GLN OXT O N N 108 GLN H H N N 109 GLN H2 H N N 110 GLN HA H N N 111 GLN HB2 H N N 112 GLN HB3 H N N 113 GLN HG2 H N N 114 GLN HG3 H N N 115 GLN HE21 H N N 116 GLN HE22 H N N 117 GLN HXT H N N 118 GLU N N N N 119 GLU CA C N S 120 GLU C C N N 121 GLU O O N N 122 GLU CB C N N 123 GLU CG C N N 124 GLU CD C N N 125 GLU OE1 O N N 126 GLU OE2 O N N 127 GLU OXT O N N 128 GLU H H N N 129 GLU H2 H N N 130 GLU HA H N N 131 GLU HB2 H N N 132 GLU HB3 H N N 133 GLU HG2 H N N 134 GLU HG3 H N N 135 GLU HE2 H N N 136 GLU HXT H N N 137 GLY N N N N 138 GLY CA C N N 139 GLY C C N N 140 GLY O O N N 141 GLY OXT O N N 142 GLY H H N N 143 GLY H2 H N N 144 GLY HA2 H N N 145 GLY HA3 H N N 146 GLY HXT H N N 147 GOL C1 C N N 148 GOL O1 O N N 149 GOL C2 C N N 150 GOL O2 O N N 151 GOL C3 C N N 152 GOL O3 O N N 153 GOL H11 H N N 154 GOL H12 H N N 155 GOL HO1 H N N 156 GOL H2 H N N 157 GOL HO2 H N N 158 GOL H31 H N N 159 GOL H32 H N N 160 GOL HO3 H N N 161 HIS N N N N 162 HIS CA C N S 163 HIS C C N N 164 HIS O O N N 165 HIS CB C N N 166 HIS CG C Y N 167 HIS ND1 N Y N 168 HIS CD2 C Y N 169 HIS CE1 C Y N 170 HIS NE2 N Y N 171 HIS OXT O N N 172 HIS H H N N 173 HIS H2 H N N 174 HIS HA H N N 175 HIS HB2 H N N 176 HIS HB3 H N N 177 HIS HD1 H N N 178 HIS HD2 H N N 179 HIS HE1 H N N 180 HIS HE2 H N N 181 HIS HXT H N N 182 HOH O O N N 183 HOH H1 H N N 184 HOH H2 H N N 185 ILE N N N N 186 ILE CA C N S 187 ILE C C N N 188 ILE O O N N 189 ILE CB C N S 190 ILE CG1 C N N 191 ILE CG2 C N N 192 ILE CD1 C N N 193 ILE OXT O N N 194 ILE H H N N 195 ILE H2 H N N 196 ILE HA H N N 197 ILE HB H N N 198 ILE HG12 H N N 199 ILE HG13 H N N 200 ILE HG21 H N N 201 ILE HG22 H N N 202 ILE HG23 H N N 203 ILE HD11 H N N 204 ILE HD12 H N N 205 ILE HD13 H N N 206 ILE HXT H N N 207 LEU N N N N 208 LEU CA C N S 209 LEU C C N N 210 LEU O O N N 211 LEU CB C N N 212 LEU CG C N N 213 LEU CD1 C N N 214 LEU CD2 C N N 215 LEU OXT O N N 216 LEU H H N N 217 LEU H2 H N N 218 LEU HA H N N 219 LEU HB2 H N N 220 LEU HB3 H N N 221 LEU HG H N N 222 LEU HD11 H N N 223 LEU HD12 H N N 224 LEU HD13 H N N 225 LEU HD21 H N N 226 LEU HD22 H N N 227 LEU HD23 H N N 228 LEU HXT H N N 229 LYS N N N N 230 LYS CA C N S 231 LYS C C N N 232 LYS O O N N 233 LYS CB C N N 234 LYS CG C N N 235 LYS CD C N N 236 LYS CE C N N 237 LYS NZ N N N 238 LYS OXT O N N 239 LYS H H N N 240 LYS H2 H N N 241 LYS HA H N N 242 LYS HB2 H N N 243 LYS HB3 H N N 244 LYS HG2 H N N 245 LYS HG3 H N N 246 LYS HD2 H N N 247 LYS HD3 H N N 248 LYS HE2 H N N 249 LYS HE3 H N N 250 LYS HZ1 H N N 251 LYS HZ2 H N N 252 LYS HZ3 H N N 253 LYS HXT H N N 254 MET N N N N 255 MET CA C N S 256 MET C C N N 257 MET O O N N 258 MET CB C N N 259 MET CG C N N 260 MET SD S N N 261 MET CE C N N 262 MET OXT O N N 263 MET H H N N 264 MET H2 H N N 265 MET HA H N N 266 MET HB2 H N N 267 MET HB3 H N N 268 MET HG2 H N N 269 MET HG3 H N N 270 MET HE1 H N N 271 MET HE2 H N N 272 MET HE3 H N N 273 MET HXT H N N 274 PHE N N N N 275 PHE CA C N S 276 PHE C C N N 277 PHE O O N N 278 PHE CB C N N 279 PHE CG C Y N 280 PHE CD1 C Y N 281 PHE CD2 C Y N 282 PHE CE1 C Y N 283 PHE CE2 C Y N 284 PHE CZ C Y N 285 PHE OXT O N N 286 PHE H H N N 287 PHE H2 H N N 288 PHE HA H N N 289 PHE HB2 H N N 290 PHE HB3 H N N 291 PHE HD1 H N N 292 PHE HD2 H N N 293 PHE HE1 H N N 294 PHE HE2 H N N 295 PHE HZ H N N 296 PHE HXT H N N 297 PRO N N N N 298 PRO CA C N S 299 PRO C C N N 300 PRO O O N N 301 PRO CB C N N 302 PRO CG C N N 303 PRO CD C N N 304 PRO OXT O N N 305 PRO H H N N 306 PRO HA H N N 307 PRO HB2 H N N 308 PRO HB3 H N N 309 PRO HG2 H N N 310 PRO HG3 H N N 311 PRO HD2 H N N 312 PRO HD3 H N N 313 PRO HXT H N N 314 RIT C1 C Y N 315 RIT C2 C Y N 316 RIT S3 S Y N 317 RIT C4 C Y N 318 RIT N5 N Y N 319 RIT C6 C N N 320 RIT O7 O N N 321 RIT C10 C N N 322 RIT O24 O N N 323 RIT N11 N N N 324 RIT C12 C N S 325 RIT C13 C N S 326 RIT C14 C N N 327 RIT C15 C N S 328 RIT C26 C N N 329 RIT C28 C Y N 330 RIT C31 C Y N 331 RIT C32 C Y N 332 RIT C33 C Y N 333 RIT C34 C Y N 334 RIT C35 C Y N 335 RIT O41 O N N 336 RIT C44 C N N 337 RIT C45 C Y N 338 RIT C48 C Y N 339 RIT C49 C Y N 340 RIT C50 C Y N 341 RIT C51 C Y N 342 RIT C52 C Y N 343 RIT N58 N N N 344 RIT N20 N N N 345 RIT C19 C N S 346 RIT C18 C N N 347 RIT O61 O N N 348 RIT C62 C N N 349 RIT C64 C N N 350 RIT C68 C N N 351 RIT C21 C N N 352 RIT N74 N N N 353 RIT C75 C N N 354 RIT O76 O N N 355 RIT C77 C Y N 356 RIT C80 C Y N 357 RIT S81 S Y N 358 RIT C82 C Y N 359 RIT N83 N Y N 360 RIT C85 C N N 361 RIT C86 C N N 362 RIT C90 C N N 363 RIT C95 C N N 364 RIT H1 H N N 365 RIT H4 H N N 366 RIT H61 H N N 367 RIT H62A H N N 368 RIT H11 H N N 369 RIT H12 H N N 370 RIT H13 H N N 371 RIT H141 H N N 372 RIT H142 H N N 373 RIT H15 H N N 374 RIT H261 H N N 375 RIT H262 H N N 376 RIT H31 H N N 377 RIT H32 H N N 378 RIT H33 H N N 379 RIT H34 H N N 380 RIT H35 H N N 381 RIT HO4 H N N 382 RIT H441 H N N 383 RIT H442 H N N 384 RIT H48 H N N 385 RIT H49 H N N 386 RIT H50 H N N 387 RIT H51 H N N 388 RIT H52 H N N 389 RIT H58 H N N 390 RIT H20 H N N 391 RIT H19 H N N 392 RIT H62 H N N 393 RIT H641 H N N 394 RIT H642 H N N 395 RIT H643 H N N 396 RIT H681 H N N 397 RIT H682 H N N 398 RIT H683 H N N 399 RIT H751 H N N 400 RIT H752 H N N 401 RIT H80 H N N 402 RIT H85 H N N 403 RIT H861 H N N 404 RIT H862 H N N 405 RIT H863 H N N 406 RIT H901 H N N 407 RIT H902 H N N 408 RIT H903 H N N 409 RIT H951 H N N 410 RIT H952 H N N 411 RIT H953 H N N 412 SER N N N N 413 SER CA C N S 414 SER C C N N 415 SER O O N N 416 SER CB C N N 417 SER OG O N N 418 SER OXT O N N 419 SER H H N N 420 SER H2 H N N 421 SER HA H N N 422 SER HB2 H N N 423 SER HB3 H N N 424 SER HG H N N 425 SER HXT H N N 426 SO4 S S N N 427 SO4 O1 O N N 428 SO4 O2 O N N 429 SO4 O3 O N N 430 SO4 O4 O N N 431 THR N N N N 432 THR CA C N S 433 THR C C N N 434 THR O O N N 435 THR CB C N R 436 THR OG1 O N N 437 THR CG2 C N N 438 THR OXT O N N 439 THR H H N N 440 THR H2 H N N 441 THR HA H N N 442 THR HB H N N 443 THR HG1 H N N 444 THR HG21 H N N 445 THR HG22 H N N 446 THR HG23 H N N 447 THR HXT H N N 448 TRP N N N N 449 TRP CA C N S 450 TRP C C N N 451 TRP O O N N 452 TRP CB C N N 453 TRP CG C Y N 454 TRP CD1 C Y N 455 TRP CD2 C Y N 456 TRP NE1 N Y N 457 TRP CE2 C Y N 458 TRP CE3 C Y N 459 TRP CZ2 C Y N 460 TRP CZ3 C Y N 461 TRP CH2 C Y N 462 TRP OXT O N N 463 TRP H H N N 464 TRP H2 H N N 465 TRP HA H N N 466 TRP HB2 H N N 467 TRP HB3 H N N 468 TRP HD1 H N N 469 TRP HE1 H N N 470 TRP HE3 H N N 471 TRP HZ2 H N N 472 TRP HZ3 H N N 473 TRP HH2 H N N 474 TRP HXT H N N 475 TYR N N N N 476 TYR CA C N S 477 TYR C C N N 478 TYR O O N N 479 TYR CB C N N 480 TYR CG C Y N 481 TYR CD1 C Y N 482 TYR CD2 C Y N 483 TYR CE1 C Y N 484 TYR CE2 C Y N 485 TYR CZ C Y N 486 TYR OH O N N 487 TYR OXT O N N 488 TYR H H N N 489 TYR H2 H N N 490 TYR HA H N N 491 TYR HB2 H N N 492 TYR HB3 H N N 493 TYR HD1 H N N 494 TYR HD2 H N N 495 TYR HE1 H N N 496 TYR HE2 H N N 497 TYR HH H N N 498 TYR HXT H N N 499 VAL N N N N 500 VAL CA C N S 501 VAL C C N N 502 VAL O O N N 503 VAL CB C N N 504 VAL CG1 C N N 505 VAL CG2 C N N 506 VAL OXT O N N 507 VAL H H N N 508 VAL H2 H N N 509 VAL HA H N N 510 VAL HB H N N 511 VAL HG11 H N N 512 VAL HG12 H N N 513 VAL HG13 H N N 514 VAL HG21 H N N 515 VAL HG22 H N N 516 VAL HG23 H N N 517 VAL HXT H N N 518 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DMS S O doub N N 83 DMS S C1 sing N N 84 DMS S C2 sing N N 85 DMS C1 H11 sing N N 86 DMS C1 H12 sing N N 87 DMS C1 H13 sing N N 88 DMS C2 H21 sing N N 89 DMS C2 H22 sing N N 90 DMS C2 H23 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 GOL C1 O1 sing N N 138 GOL C1 C2 sing N N 139 GOL C1 H11 sing N N 140 GOL C1 H12 sing N N 141 GOL O1 HO1 sing N N 142 GOL C2 O2 sing N N 143 GOL C2 C3 sing N N 144 GOL C2 H2 sing N N 145 GOL O2 HO2 sing N N 146 GOL C3 O3 sing N N 147 GOL C3 H31 sing N N 148 GOL C3 H32 sing N N 149 GOL O3 HO3 sing N N 150 HIS N CA sing N N 151 HIS N H sing N N 152 HIS N H2 sing N N 153 HIS CA C sing N N 154 HIS CA CB sing N N 155 HIS CA HA sing N N 156 HIS C O doub N N 157 HIS C OXT sing N N 158 HIS CB CG sing N N 159 HIS CB HB2 sing N N 160 HIS CB HB3 sing N N 161 HIS CG ND1 sing Y N 162 HIS CG CD2 doub Y N 163 HIS ND1 CE1 doub Y N 164 HIS ND1 HD1 sing N N 165 HIS CD2 NE2 sing Y N 166 HIS CD2 HD2 sing N N 167 HIS CE1 NE2 sing Y N 168 HIS CE1 HE1 sing N N 169 HIS NE2 HE2 sing N N 170 HIS OXT HXT sing N N 171 HOH O H1 sing N N 172 HOH O H2 sing N N 173 ILE N CA sing N N 174 ILE N H sing N N 175 ILE N H2 sing N N 176 ILE CA C sing N N 177 ILE CA CB sing N N 178 ILE CA HA sing N N 179 ILE C O doub N N 180 ILE C OXT sing N N 181 ILE CB CG1 sing N N 182 ILE CB CG2 sing N N 183 ILE CB HB sing N N 184 ILE CG1 CD1 sing N N 185 ILE CG1 HG12 sing N N 186 ILE CG1 HG13 sing N N 187 ILE CG2 HG21 sing N N 188 ILE CG2 HG22 sing N N 189 ILE CG2 HG23 sing N N 190 ILE CD1 HD11 sing N N 191 ILE CD1 HD12 sing N N 192 ILE CD1 HD13 sing N N 193 ILE OXT HXT sing N N 194 LEU N CA sing N N 195 LEU N H sing N N 196 LEU N H2 sing N N 197 LEU CA C sing N N 198 LEU CA CB sing N N 199 LEU CA HA sing N N 200 LEU C O doub N N 201 LEU C OXT sing N N 202 LEU CB CG sing N N 203 LEU CB HB2 sing N N 204 LEU CB HB3 sing N N 205 LEU CG CD1 sing N N 206 LEU CG CD2 sing N N 207 LEU CG HG sing N N 208 LEU CD1 HD11 sing N N 209 LEU CD1 HD12 sing N N 210 LEU CD1 HD13 sing N N 211 LEU CD2 HD21 sing N N 212 LEU CD2 HD22 sing N N 213 LEU CD2 HD23 sing N N 214 LEU OXT HXT sing N N 215 LYS N CA sing N N 216 LYS N H sing N N 217 LYS N H2 sing N N 218 LYS CA C sing N N 219 LYS CA CB sing N N 220 LYS CA HA sing N N 221 LYS C O doub N N 222 LYS C OXT sing N N 223 LYS CB CG sing N N 224 LYS CB HB2 sing N N 225 LYS CB HB3 sing N N 226 LYS CG CD sing N N 227 LYS CG HG2 sing N N 228 LYS CG HG3 sing N N 229 LYS CD CE sing N N 230 LYS CD HD2 sing N N 231 LYS CD HD3 sing N N 232 LYS CE NZ sing N N 233 LYS CE HE2 sing N N 234 LYS CE HE3 sing N N 235 LYS NZ HZ1 sing N N 236 LYS NZ HZ2 sing N N 237 LYS NZ HZ3 sing N N 238 LYS OXT HXT sing N N 239 MET N CA sing N N 240 MET N H sing N N 241 MET N H2 sing N N 242 MET CA C sing N N 243 MET CA CB sing N N 244 MET CA HA sing N N 245 MET C O doub N N 246 MET C OXT sing N N 247 MET CB CG sing N N 248 MET CB HB2 sing N N 249 MET CB HB3 sing N N 250 MET CG SD sing N N 251 MET CG HG2 sing N N 252 MET CG HG3 sing N N 253 MET SD CE sing N N 254 MET CE HE1 sing N N 255 MET CE HE2 sing N N 256 MET CE HE3 sing N N 257 MET OXT HXT sing N N 258 PHE N CA sing N N 259 PHE N H sing N N 260 PHE N H2 sing N N 261 PHE CA C sing N N 262 PHE CA CB sing N N 263 PHE CA HA sing N N 264 PHE C O doub N N 265 PHE C OXT sing N N 266 PHE CB CG sing N N 267 PHE CB HB2 sing N N 268 PHE CB HB3 sing N N 269 PHE CG CD1 doub Y N 270 PHE CG CD2 sing Y N 271 PHE CD1 CE1 sing Y N 272 PHE CD1 HD1 sing N N 273 PHE CD2 CE2 doub Y N 274 PHE CD2 HD2 sing N N 275 PHE CE1 CZ doub Y N 276 PHE CE1 HE1 sing N N 277 PHE CE2 CZ sing Y N 278 PHE CE2 HE2 sing N N 279 PHE CZ HZ sing N N 280 PHE OXT HXT sing N N 281 PRO N CA sing N N 282 PRO N CD sing N N 283 PRO N H sing N N 284 PRO CA C sing N N 285 PRO CA CB sing N N 286 PRO CA HA sing N N 287 PRO C O doub N N 288 PRO C OXT sing N N 289 PRO CB CG sing N N 290 PRO CB HB2 sing N N 291 PRO CB HB3 sing N N 292 PRO CG CD sing N N 293 PRO CG HG2 sing N N 294 PRO CG HG3 sing N N 295 PRO CD HD2 sing N N 296 PRO CD HD3 sing N N 297 PRO OXT HXT sing N N 298 RIT C1 C2 doub Y N 299 RIT C1 N5 sing Y N 300 RIT C1 H1 sing N N 301 RIT C2 S3 sing Y N 302 RIT C2 C6 sing N N 303 RIT S3 C4 sing Y N 304 RIT C4 N5 doub Y N 305 RIT C4 H4 sing N N 306 RIT C6 O7 sing N N 307 RIT C6 H61 sing N N 308 RIT C6 H62A sing N N 309 RIT O7 C10 sing N N 310 RIT C10 N11 sing N N 311 RIT C10 O24 doub N N 312 RIT N11 C12 sing N N 313 RIT N11 H11 sing N N 314 RIT C12 C13 sing N N 315 RIT C12 C26 sing N N 316 RIT C12 H12 sing N N 317 RIT C13 C14 sing N N 318 RIT C13 O41 sing N N 319 RIT C13 H13 sing N N 320 RIT C14 C15 sing N N 321 RIT C14 H141 sing N N 322 RIT C14 H142 sing N N 323 RIT C15 C44 sing N N 324 RIT C15 N58 sing N N 325 RIT C15 H15 sing N N 326 RIT C18 C19 sing N N 327 RIT C18 N58 sing N N 328 RIT C18 O61 doub N N 329 RIT C19 N20 sing N N 330 RIT C19 C62 sing N N 331 RIT C19 H19 sing N N 332 RIT N20 C21 sing N N 333 RIT N20 H20 sing N N 334 RIT C21 N74 sing N N 335 RIT C21 O76 doub N N 336 RIT C26 C28 sing N N 337 RIT C26 H261 sing N N 338 RIT C26 H262 sing N N 339 RIT C28 C31 doub Y N 340 RIT C28 C35 sing Y N 341 RIT C31 C32 sing Y N 342 RIT C31 H31 sing N N 343 RIT C32 C33 doub Y N 344 RIT C32 H32 sing N N 345 RIT C33 C34 sing Y N 346 RIT C33 H33 sing N N 347 RIT C34 C35 doub Y N 348 RIT C34 H34 sing N N 349 RIT C35 H35 sing N N 350 RIT O41 HO4 sing N N 351 RIT C44 C45 sing N N 352 RIT C44 H441 sing N N 353 RIT C44 H442 sing N N 354 RIT C45 C48 doub Y N 355 RIT C45 C52 sing Y N 356 RIT C48 C49 sing Y N 357 RIT C48 H48 sing N N 358 RIT C49 C50 doub Y N 359 RIT C49 H49 sing N N 360 RIT C50 C51 sing Y N 361 RIT C50 H50 sing N N 362 RIT C51 C52 doub Y N 363 RIT C51 H51 sing N N 364 RIT C52 H52 sing N N 365 RIT N58 H58 sing N N 366 RIT C62 C64 sing N N 367 RIT C62 C68 sing N N 368 RIT C62 H62 sing N N 369 RIT C64 H641 sing N N 370 RIT C64 H642 sing N N 371 RIT C64 H643 sing N N 372 RIT C68 H681 sing N N 373 RIT C68 H682 sing N N 374 RIT C68 H683 sing N N 375 RIT N74 C75 sing N N 376 RIT N74 C95 sing N N 377 RIT C75 C77 sing N N 378 RIT C75 H751 sing N N 379 RIT C75 H752 sing N N 380 RIT C77 C80 doub Y N 381 RIT C77 N83 sing Y N 382 RIT C80 S81 sing Y N 383 RIT C80 H80 sing N N 384 RIT S81 C82 sing Y N 385 RIT C82 N83 doub Y N 386 RIT C82 C85 sing N N 387 RIT C85 C86 sing N N 388 RIT C85 C90 sing N N 389 RIT C85 H85 sing N N 390 RIT C86 H861 sing N N 391 RIT C86 H862 sing N N 392 RIT C86 H863 sing N N 393 RIT C90 H901 sing N N 394 RIT C90 H902 sing N N 395 RIT C90 H903 sing N N 396 RIT C95 H951 sing N N 397 RIT C95 H952 sing N N 398 RIT C95 H953 sing N N 399 SER N CA sing N N 400 SER N H sing N N 401 SER N H2 sing N N 402 SER CA C sing N N 403 SER CA CB sing N N 404 SER CA HA sing N N 405 SER C O doub N N 406 SER C OXT sing N N 407 SER CB OG sing N N 408 SER CB HB2 sing N N 409 SER CB HB3 sing N N 410 SER OG HG sing N N 411 SER OXT HXT sing N N 412 SO4 S O1 doub N N 413 SO4 S O2 doub N N 414 SO4 S O3 sing N N 415 SO4 S O4 sing N N 416 THR N CA sing N N 417 THR N H sing N N 418 THR N H2 sing N N 419 THR CA C sing N N 420 THR CA CB sing N N 421 THR CA HA sing N N 422 THR C O doub N N 423 THR C OXT sing N N 424 THR CB OG1 sing N N 425 THR CB CG2 sing N N 426 THR CB HB sing N N 427 THR OG1 HG1 sing N N 428 THR CG2 HG21 sing N N 429 THR CG2 HG22 sing N N 430 THR CG2 HG23 sing N N 431 THR OXT HXT sing N N 432 TRP N CA sing N N 433 TRP N H sing N N 434 TRP N H2 sing N N 435 TRP CA C sing N N 436 TRP CA CB sing N N 437 TRP CA HA sing N N 438 TRP C O doub N N 439 TRP C OXT sing N N 440 TRP CB CG sing N N 441 TRP CB HB2 sing N N 442 TRP CB HB3 sing N N 443 TRP CG CD1 doub Y N 444 TRP CG CD2 sing Y N 445 TRP CD1 NE1 sing Y N 446 TRP CD1 HD1 sing N N 447 TRP CD2 CE2 doub Y N 448 TRP CD2 CE3 sing Y N 449 TRP NE1 CE2 sing Y N 450 TRP NE1 HE1 sing N N 451 TRP CE2 CZ2 sing Y N 452 TRP CE3 CZ3 doub Y N 453 TRP CE3 HE3 sing N N 454 TRP CZ2 CH2 doub Y N 455 TRP CZ2 HZ2 sing N N 456 TRP CZ3 CH2 sing Y N 457 TRP CZ3 HZ3 sing N N 458 TRP CH2 HH2 sing N N 459 TRP OXT HXT sing N N 460 TYR N CA sing N N 461 TYR N H sing N N 462 TYR N H2 sing N N 463 TYR CA C sing N N 464 TYR CA CB sing N N 465 TYR CA HA sing N N 466 TYR C O doub N N 467 TYR C OXT sing N N 468 TYR CB CG sing N N 469 TYR CB HB2 sing N N 470 TYR CB HB3 sing N N 471 TYR CG CD1 doub Y N 472 TYR CG CD2 sing Y N 473 TYR CD1 CE1 sing Y N 474 TYR CD1 HD1 sing N N 475 TYR CD2 CE2 doub Y N 476 TYR CD2 HD2 sing N N 477 TYR CE1 CZ doub Y N 478 TYR CE1 HE1 sing N N 479 TYR CE2 CZ sing Y N 480 TYR CE2 HE2 sing N N 481 TYR CZ OH sing N N 482 TYR OH HH sing N N 483 TYR OXT HXT sing N N 484 VAL N CA sing N N 485 VAL N H sing N N 486 VAL N H2 sing N N 487 VAL CA C sing N N 488 VAL CA CB sing N N 489 VAL CA HA sing N N 490 VAL C O doub N N 491 VAL C OXT sing N N 492 VAL CB CG1 sing N N 493 VAL CB CG2 sing N N 494 VAL CB HB sing N N 495 VAL CG1 HG11 sing N N 496 VAL CG1 HG12 sing N N 497 VAL CG1 HG13 sing N N 498 VAL CG2 HG21 sing N N 499 VAL CG2 HG22 sing N N 500 VAL CG2 HG23 sing N N 501 VAL OXT HXT sing N N 502 # _atom_sites.entry_id 3NDX _atom_sites.fract_transf_matrix[1][1] 0.019547 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017074 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016355 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_