HEADER TRANSFERASE 08-JUN-10 3NE1 TITLE MYCOBACTERIUM TUBERCULOSIS ACYL CARRIER PROTEIN SYNTHASE IN COMPLEX TITLE 2 WITH SULFATE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOLO-[ACYL-CARRIER-PROTEIN] SYNTHASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: HOLO-ACP SYNTHASE, 4'-PHOSPHOPANTETHEINYL TRANSFERASE ACPS; COMPND 5 EC: 2.7.8.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: ACPS, MT2599, MTV009.08C, MYCOBACTERIUM TUBERCULOSIS, RV2523C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET30B KEYWDS ACYL CARRIER PROTEIN SYNTHASE, ACYL CARRIER PROTEIN, FATTY ACID KEYWDS 2 SYNTHASE, ACPS, MYCOBACTERIUM TUBERCULOSIS STRUCTURAL PROTEOMICS KEYWDS 3 PROJECT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.GOKULAN REVDAT 4 21-FEB-24 3NE1 1 REMARK REVDAT 3 17-JUL-19 3NE1 1 REMARK REVDAT 2 25-JUL-12 3NE1 1 JRNL TITLE VERSN REVDAT 1 21-JUL-10 3NE1 0 JRNL AUTH K.GOKULAN,A.AGGARWAL,L.SHIPMAN,G.S.BESRA,J.C.SACCHETTINI JRNL TITL MYCOBACTERIUM TUBERCULOSIS ACYL CARRIER PROTEIN SYNTHASE JRNL TITL 2 ADOPTS TWO DIFFERENT PH-DEPENDENT STRUCTURAL CONFORMATIONS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 67 657 2011 JRNL REFN ISSN 0907-4449 JRNL PMID 21697604 JRNL DOI 10.1107/S0907444911020221 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 14704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 761 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 758 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 774 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2910 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.35000 REMARK 3 B22 (A**2) : -3.53000 REMARK 3 B33 (A**2) : 5.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.353 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.294 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.034 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2989 ; 0.054 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2700 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4089 ; 3.348 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6189 ; 1.486 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 384 ; 8.855 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 471 ; 0.220 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3393 ; 0.016 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 624 ; 0.015 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1088 ; 0.429 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3517 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2133 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 74 ; 0.207 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.311 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 74 ; 0.323 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.286 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1926 ; 2.393 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3099 ; 4.125 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1063 ; 4.678 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 990 ; 7.288 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059711. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 4 TO 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15471 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.6% PEG 4K, 0.07 M SODIUM ACETATE PH REMARK 280 4.6 TO 5.5, 50 MM AMMONIUM SULFATE, 30% GLYCEROL., EVAPORATION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.56150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.43600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.59800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.56150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.43600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.59800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.56150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.43600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.59800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.56150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.43600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.59800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 3 CD1 REMARK 470 ILE A 8 CD1 REMARK 470 ILE A 13 CD1 REMARK 470 ILE A 61 CD1 REMARK 470 ILE A 79 CD1 REMARK 470 ILE A 83 CD1 REMARK 470 ILE A 101 CD1 REMARK 470 ILE A 110 CD1 REMARK 470 ILE A 126 CD1 REMARK 470 PRO A 130 O REMARK 470 ILE B 3 CD1 REMARK 470 ILE B 8 CD1 REMARK 470 ILE B 13 CD1 REMARK 470 ILE B 61 CD1 REMARK 470 ILE B 79 CD1 REMARK 470 ILE B 83 CD1 REMARK 470 ILE B 101 CD1 REMARK 470 ILE B 110 CD1 REMARK 470 ILE B 126 CD1 REMARK 470 PRO B 130 O REMARK 470 ILE C 3 CD1 REMARK 470 ILE C 8 CD1 REMARK 470 ILE C 13 CD1 REMARK 470 ILE C 61 CD1 REMARK 470 ILE C 79 CD1 REMARK 470 ILE C 83 CD1 REMARK 470 ILE C 101 CD1 REMARK 470 ILE C 110 CD1 REMARK 470 ILE C 126 CD1 REMARK 470 PRO C 130 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 139 O HOH B 139 2565 2.08 REMARK 500 NE2 GLN B 22 NE2 GLN B 22 2565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 18 CG GLU A 18 CD 0.094 REMARK 500 GLU A 18 CD GLU A 18 OE1 0.076 REMARK 500 ASP A 21 CB ASP A 21 CG 0.135 REMARK 500 PHE A 27 CD1 PHE A 27 CE1 0.199 REMARK 500 PHE A 27 CE2 PHE A 27 CD2 0.135 REMARK 500 GLU A 29 CD GLU A 29 OE1 0.090 REMARK 500 GLU A 35 CD GLU A 35 OE2 -0.069 REMARK 500 ARG A 36 CG ARG A 36 CD -0.191 REMARK 500 LYS A 42 CE LYS A 42 NZ 0.175 REMARK 500 ALA A 47 CA ALA A 47 CB 0.141 REMARK 500 ARG A 53 CG ARG A 53 CD 0.156 REMARK 500 ALA A 56 N ALA A 56 CA 0.168 REMARK 500 LYS A 57 CD LYS A 57 CE 0.220 REMARK 500 LYS A 62 CE LYS A 62 NZ -0.151 REMARK 500 LYS A 62 C LYS A 62 O -0.119 REMARK 500 TRP A 64 CG TRP A 64 CD1 0.095 REMARK 500 SER A 65 CB SER A 65 OG -0.087 REMARK 500 ARG A 94 NE ARG A 94 CZ 0.106 REMARK 500 ARG A 96 CG ARG A 96 CD 0.233 REMARK 500 ARG A 96 NE ARG A 96 CZ -0.081 REMARK 500 GLU A 103 CD GLU A 103 OE2 0.069 REMARK 500 ASP A 107 CB ASP A 107 CG 0.156 REMARK 500 ALA A 121 CA ALA A 121 CB 0.127 REMARK 500 ALA A 125 C ALA A 125 O -0.119 REMARK 500 VAL B 4 CB VAL B 4 CG1 0.131 REMARK 500 VAL B 6 C VAL B 6 O -0.129 REMARK 500 PHE B 16 CB PHE B 16 CG 0.117 REMARK 500 GLU B 18 CD GLU B 18 OE2 0.095 REMARK 500 ASP B 21 C ASP B 21 O -0.130 REMARK 500 GLU B 29 CB GLU B 29 CG 0.134 REMARK 500 GLU B 29 CG GLU B 29 CD 0.126 REMARK 500 GLU B 29 CD GLU B 29 OE1 0.090 REMARK 500 PHE B 31 CG PHE B 31 CD2 0.153 REMARK 500 ARG B 37 CG ARG B 37 CD 0.169 REMARK 500 ALA B 39 CA ALA B 39 CB -0.149 REMARK 500 LYS B 42 CD LYS B 42 CE 0.182 REMARK 500 ARG B 48 NE ARG B 48 CZ 0.101 REMARK 500 ALA B 52 N ALA B 52 CA -0.129 REMARK 500 ARG B 53 CZ ARG B 53 NH2 0.079 REMARK 500 TRP B 54 CB TRP B 54 CG 0.156 REMARK 500 LYS B 57 CD LYS B 57 CE 0.150 REMARK 500 ALA B 59 CA ALA B 59 CB -0.145 REMARK 500 VAL B 60 CB VAL B 60 CG2 0.181 REMARK 500 LYS B 62 CE LYS B 62 NZ 0.194 REMARK 500 ALA B 63 CA ALA B 63 CB -0.166 REMARK 500 VAL B 74 CA VAL B 74 CB 0.176 REMARK 500 MET B 89 CG MET B 89 SD 0.158 REMARK 500 MET B 89 SD MET B 89 CE 0.448 REMARK 500 TRP B 90 CB TRP B 90 CG 0.166 REMARK 500 GLU B 103 CG GLU B 103 CD 0.096 REMARK 500 REMARK 500 THIS ENTRY HAS 89 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 2 N - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 ILE A 3 CG1 - CB - CG2 ANGL. DEV. = -15.4 DEGREES REMARK 500 ASP A 9 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 9 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 15 CB - CG - OD2 ANGL. DEV. = 10.5 DEGREES REMARK 500 THR A 30 OG1 - CB - CG2 ANGL. DEV. = -14.0 DEGREES REMARK 500 ARG A 37 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 37 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 48 CG - CD - NE ANGL. DEV. = -16.0 DEGREES REMARK 500 ARG A 48 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 LYS A 62 CD - CE - NZ ANGL. DEV. = -15.4 DEGREES REMARK 500 LEU A 75 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 ASP A 78 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 ASP A 88 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 119 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 9 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ASP B 15 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 THR B 30 OG1 - CB - CG2 ANGL. DEV. = -15.7 DEGREES REMARK 500 PHE B 31 CB - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 PHE B 31 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP B 38 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 41 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 48 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 LYS B 62 CD - CE - NZ ANGL. DEV. = 18.8 DEGREES REMARK 500 ARG B 68 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 PRO B 73 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 LEU B 75 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 ASP B 78 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 82 CB - CG - OD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP B 88 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG B 92 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 96 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 LEU B 97 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 VAL B 112 CG1 - CB - CG2 ANGL. DEV. = -12.2 DEGREES REMARK 500 VAL B 112 CA - CB - CG1 ANGL. DEV. = -10.8 DEGREES REMARK 500 ASP C 9 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP C 9 CB - CG - OD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ASP C 15 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP C 21 CB - CG - OD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG C 36 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP C 41 CB - CG - OD2 ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG C 48 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 LEU C 50 CA - CB - CG ANGL. DEV. = 20.6 DEGREES REMARK 500 ASP C 78 CB - CG - OD2 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG C 81 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG C 81 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP C 82 CB - CG - OD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG C 92 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 94 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 53 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 23 103.99 -44.41 REMARK 500 THR A 30 -27.73 -148.23 REMARK 500 PHE A 69 -16.15 -43.29 REMARK 500 GLN A 71 156.17 -39.57 REMARK 500 PRO A 73 50.94 -98.01 REMARK 500 LEU A 75 72.15 74.38 REMARK 500 PRO A 76 -89.70 -63.24 REMARK 500 GLU A 77 52.41 179.75 REMARK 500 ASP A 78 62.17 -150.51 REMARK 500 LEU A 105 25.36 -71.16 REMARK 500 ILE B 3 98.90 28.39 REMARK 500 VAL B 26 -8.84 -58.55 REMARK 500 LYS B 42 -23.95 -23.69 REMARK 500 SER B 43 82.14 -153.27 REMARK 500 SER B 44 29.39 -143.29 REMARK 500 SER B 45 -58.86 72.63 REMARK 500 PHE B 69 35.04 -83.99 REMARK 500 GLN B 71 96.52 -28.31 REMARK 500 ARG B 72 -85.08 -21.53 REMARK 500 PRO B 73 59.14 13.72 REMARK 500 VAL B 74 -113.29 -14.59 REMARK 500 ASP B 88 163.93 -42.71 REMARK 500 MET B 89 -72.14 -35.68 REMARK 500 LEU B 105 45.34 -91.76 REMARK 500 LYS C 42 -22.24 -38.39 REMARK 500 ARG C 48 -70.79 -27.98 REMARK 500 PHE C 69 30.54 -99.75 REMARK 500 GLN C 71 88.98 65.27 REMARK 500 ARG C 72 78.54 20.06 REMARK 500 PRO C 73 138.59 -34.38 REMARK 500 ASP C 78 2.67 83.07 REMARK 500 ILE C 79 170.80 -49.96 REMARK 500 HIS C 80 -59.86 75.53 REMARK 500 VAL C 85 68.91 -101.54 REMARK 500 MET C 89 -67.72 63.13 REMARK 500 ALA C 106 -67.63 -29.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 71 ARG B 72 -149.23 REMARK 500 ARG B 72 PRO B 73 -143.53 REMARK 500 GLN C 71 ARG C 72 -148.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 131 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NE3 RELATED DB: PDB REMARK 900 RELATED ID: 3NE9 RELATED DB: PDB DBREF 3NE1 A 1 130 UNP P0A4W8 ACPS_MYCTU 1 130 DBREF 3NE1 B 1 130 UNP P0A4W8 ACPS_MYCTU 1 130 DBREF 3NE1 C 1 130 UNP P0A4W8 ACPS_MYCTU 1 130 SEQRES 1 A 130 MET GLY ILE VAL GLY VAL GLY ILE ASP LEU VAL SER ILE SEQRES 2 A 130 PRO ASP PHE ALA GLU GLN VAL ASP GLN PRO GLY THR VAL SEQRES 3 A 130 PHE ALA GLU THR PHE THR PRO GLY GLU ARG ARG ASP ALA SEQRES 4 A 130 SER ASP LYS SER SER SER ALA ALA ARG HIS LEU ALA ALA SEQRES 5 A 130 ARG TRP ALA ALA LYS GLU ALA VAL ILE LYS ALA TRP SER SEQRES 6 A 130 GLY SER ARG PHE ALA GLN ARG PRO VAL LEU PRO GLU ASP SEQRES 7 A 130 ILE HIS ARG ASP ILE GLU VAL VAL THR ASP MET TRP GLY SEQRES 8 A 130 ARG PRO ARG VAL ARG LEU THR GLY ALA ILE ALA GLU TYR SEQRES 9 A 130 LEU ALA ASP VAL THR ILE HIS VAL SER LEU THR HIS GLU SEQRES 10 A 130 GLY ASP THR ALA ALA ALA VAL ALA ILE LEU GLU ALA PRO SEQRES 1 B 130 MET GLY ILE VAL GLY VAL GLY ILE ASP LEU VAL SER ILE SEQRES 2 B 130 PRO ASP PHE ALA GLU GLN VAL ASP GLN PRO GLY THR VAL SEQRES 3 B 130 PHE ALA GLU THR PHE THR PRO GLY GLU ARG ARG ASP ALA SEQRES 4 B 130 SER ASP LYS SER SER SER ALA ALA ARG HIS LEU ALA ALA SEQRES 5 B 130 ARG TRP ALA ALA LYS GLU ALA VAL ILE LYS ALA TRP SER SEQRES 6 B 130 GLY SER ARG PHE ALA GLN ARG PRO VAL LEU PRO GLU ASP SEQRES 7 B 130 ILE HIS ARG ASP ILE GLU VAL VAL THR ASP MET TRP GLY SEQRES 8 B 130 ARG PRO ARG VAL ARG LEU THR GLY ALA ILE ALA GLU TYR SEQRES 9 B 130 LEU ALA ASP VAL THR ILE HIS VAL SER LEU THR HIS GLU SEQRES 10 B 130 GLY ASP THR ALA ALA ALA VAL ALA ILE LEU GLU ALA PRO SEQRES 1 C 130 MET GLY ILE VAL GLY VAL GLY ILE ASP LEU VAL SER ILE SEQRES 2 C 130 PRO ASP PHE ALA GLU GLN VAL ASP GLN PRO GLY THR VAL SEQRES 3 C 130 PHE ALA GLU THR PHE THR PRO GLY GLU ARG ARG ASP ALA SEQRES 4 C 130 SER ASP LYS SER SER SER ALA ALA ARG HIS LEU ALA ALA SEQRES 5 C 130 ARG TRP ALA ALA LYS GLU ALA VAL ILE LYS ALA TRP SER SEQRES 6 C 130 GLY SER ARG PHE ALA GLN ARG PRO VAL LEU PRO GLU ASP SEQRES 7 C 130 ILE HIS ARG ASP ILE GLU VAL VAL THR ASP MET TRP GLY SEQRES 8 C 130 ARG PRO ARG VAL ARG LEU THR GLY ALA ILE ALA GLU TYR SEQRES 9 C 130 LEU ALA ASP VAL THR ILE HIS VAL SER LEU THR HIS GLU SEQRES 10 C 130 GLY ASP THR ALA ALA ALA VAL ALA ILE LEU GLU ALA PRO HET SO4 A 131 5 HET SO4 B 131 5 HET SO4 B 132 5 HET SO4 C 131 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 HOH *56(H2 O) HELIX 1 1 ILE A 13 ASP A 21 1 9 HELIX 2 2 THR A 32 SER A 40 1 9 HELIX 3 3 SER A 44 GLY A 66 1 23 HELIX 4 4 THR A 98 LEU A 105 1 8 HELIX 5 5 ILE B 13 GLU B 18 1 6 HELIX 6 6 THR B 32 ALA B 39 1 8 HELIX 7 7 SER B 45 SER B 65 1 21 HELIX 8 8 GLY B 66 GLN B 71 5 6 HELIX 9 9 ASP B 78 ASP B 82 1 5 HELIX 10 10 THR B 98 LEU B 105 1 8 HELIX 11 11 ILE C 13 ALA C 17 1 5 HELIX 12 12 THR C 32 ALA C 39 1 8 HELIX 13 13 SER C 44 GLY C 66 1 23 HELIX 14 14 GLY C 99 LEU C 105 1 7 SHEET 1 A 3 ILE A 3 SER A 12 0 SHEET 2 A 3 THR A 120 GLU A 128 -1 O LEU A 127 N GLY A 5 SHEET 3 A 3 ILE A 110 GLU A 117 -1 N GLU A 117 O THR A 120 SHEET 1 B 2 ILE A 83 THR A 87 0 SHEET 2 B 2 PRO A 93 LEU A 97 -1 O ARG A 94 N VAL A 86 SHEET 1 C 3 GLY B 5 SER B 12 0 SHEET 2 C 3 THR B 120 GLU B 128 -1 O LEU B 127 N GLY B 5 SHEET 3 C 3 THR B 109 GLU B 117 -1 N THR B 115 O ALA B 122 SHEET 1 D 2 ILE B 83 THR B 87 0 SHEET 2 D 2 PRO B 93 LEU B 97 -1 O ARG B 94 N VAL B 86 SHEET 1 E 3 ILE C 3 SER C 12 0 SHEET 2 E 3 THR C 120 GLU C 128 -1 O ALA C 121 N VAL C 11 SHEET 3 E 3 THR C 109 GLU C 117 -1 N THR C 115 O ALA C 122 SHEET 1 F 2 ILE C 83 THR C 87 0 SHEET 2 F 2 PRO C 93 LEU C 97 -1 O ARG C 96 N GLU C 84 SITE 1 AC1 4 SER A 45 ARG A 48 HIS A 49 HIS A 116 SITE 1 AC2 4 SER B 45 ARG B 48 HIS B 49 HIS B 116 SITE 1 AC3 5 LEU B 114 THR B 115 HIS B 116 ASP C 9 SITE 2 AC3 5 LYS C 62 SITE 1 AC4 4 SER C 45 ARG C 48 HIS C 49 HIS C 116 CRYST1 83.123 104.872 105.196 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012030 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009506 0.00000