HEADER HYDROLASE INHIBITOR 08-JUN-10 3NE4 TITLE 1.8 ANGSTROM STRUCTURE OF INTACT NATIVE WILD-TYPE ALPHA-1-ANTITRYPSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1-ANTITRYPSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 48-418; COMPND 5 SYNONYM: ALPHA-1 PROTEASE INHIBITOR, ALPHA-1-ANTIPROTEINASE, SERPIN COMPND 6 A1, SHORT PEPTIDE FROM AAT, SPAAT; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: 9606; SOURCE 6 GENE: SERPINA1, 14Q32, AAT, PI, PRO0684, PRO2209; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: XL-1 BLUE; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PQE31; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PLASMID KEYWDS ALPHA1-ANTITRYPSIN, SERPIN, LUNG DISEASE, LIVER DISEASE, KEYWDS 2 POLYMERISATION, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR A.O.M.PATSCHULL,B.GOOPTU,L.SEGU REVDAT 2 06-SEP-23 3NE4 1 SEQADV REVDAT 1 14-DEC-11 3NE4 0 JRNL AUTH A.O.PATSCHULL,L.SEGU,M.P.NYON,D.A.LOMAS,I.NOBELI, JRNL AUTH 2 T.E.BARRETT,B.GOOPTU JRNL TITL THERAPEUTIC TARGET-SITE VARIABILITY IN [ALPHA]1-ANTITRYPSIN JRNL TITL 2 CHARACTERIZED AT HIGH RESOLUTION JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 1492 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 22139150 JRNL DOI 10.1107/S1744309111040267 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 32406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1717 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2396 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2935 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 217 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.61000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.97000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.856 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2919 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3960 ; 1.553 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 373 ; 6.357 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;36.749 ;25.366 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;13.805 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;24.401 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 459 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2183 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1835 ; 1.311 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2958 ; 2.247 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1065 ; 3.296 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 975 ; 5.068 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3NE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 3.3.16 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34169 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 42.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.27400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.27400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1QLP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MMT BUFFER, 20 % PEG 1500 AND N REMARK 280 -[4-HYDROXY-3-METHYL-5- [(1H-1,2,4,5-TETRAZOL-3-YL)SULFANYL] REMARK 280 PHENYL]-4-METHYLBENZENESULFONAMIDE, PH 6.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.19000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.19000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 MET A -23 REMARK 465 PRO A -22 REMARK 465 SER A -21 REMARK 465 SER A -20 REMARK 465 VAL A -19 REMARK 465 SER A -18 REMARK 465 TRP A -17 REMARK 465 GLY A -16 REMARK 465 ILE A -15 REMARK 465 LEU A -14 REMARK 465 LEU A -13 REMARK 465 LEU A -12 REMARK 465 ALA A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 CYS A -8 REMARK 465 CYS A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 VAL A -3 REMARK 465 SER A -2 REMARK 465 LEU A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 ASP A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 GLN A 9 REMARK 465 LYS A 10 REMARK 465 THR A 11 REMARK 465 ASP A 12 REMARK 465 THR A 13 REMARK 465 SER A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 ASP A 17 REMARK 465 GLN A 18 REMARK 465 ASP A 19 REMARK 465 HIS A 20 REMARK 465 PRO A 21 REMARK 465 THR A 22 REMARK 465 PHE A 23 REMARK 465 LYS A 394 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 25 CB CG CD CE NZ REMARK 480 HIS A 43 CB CG ND1 CD2 CE1 NE2 REMARK 480 GLU A 94 CD OE1 OE2 REMARK 480 GLN A 111 CB CG CD OE1 NE2 REMARK 480 GLU A 122 CG CD OE1 OE2 REMARK 480 GLU A 132 CD OE1 OE2 REMARK 480 LYS A 135 CB CG CD CE NZ REMARK 480 LYS A 136 CB CG CD CE NZ REMARK 480 LYS A 163 CD CE NZ REMARK 480 GLN A 166 CG CD OE1 NE2 REMARK 480 LYS A 168 CG CD CE NZ REMARK 480 GLU A 175 CG CD OE1 OE2 REMARK 480 LYS A 233 CG CD CE NZ REMARK 480 LYS A 234 CD CE NZ REMARK 480 LYS A 243 CD CE NZ REMARK 480 GLU A 257 CB CG CD OE1 OE2 REMARK 480 LYS A 274 CG CD CE NZ REMARK 480 GLU A 277 CG CD OE1 OE2 REMARK 480 GLU A 279 CG CD OE1 OE2 REMARK 480 GLU A 324 CB CG CD OE1 OE2 REMARK 480 LYS A 343 CD CE NZ REMARK 480 GLU A 346 CB CG CD OE1 OE2 REMARK 480 ALA A 350 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 488 O HOH A 611 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 132 CG GLU A 132 CD -0.092 REMARK 500 GLN A 166 CB GLN A 166 CG -0.296 REMARK 500 LYS A 168 CB LYS A 168 CG -0.247 REMARK 500 ALA A 350 CA ALA A 350 CB -0.162 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 168 CA - CB - CG ANGL. DEV. = 22.7 DEGREES REMARK 500 ARG A 223 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 223 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 45 133.59 -173.52 REMARK 500 ASN A 46 67.44 -101.14 REMARK 500 SER A 47 5.19 -157.41 REMARK 500 ALA A 70 -135.52 55.69 REMARK 500 ASN A 81 31.78 73.77 REMARK 500 SER A 108 116.78 -10.56 REMARK 500 HIS A 139 53.02 39.76 REMARK 500 GLN A 166 48.41 30.68 REMARK 500 SER A 236 51.60 39.52 REMARK 500 ASN A 247 70.04 -106.90 REMARK 500 THR A 309 -36.79 -131.64 REMARK 500 LYS A 343 -32.13 -131.48 REMARK 500 ASN A 390 110.20 -165.10 REMARK 500 REMARK 500 REMARK: NULL DBREF 3NE4 A 24 394 UNP P01009 A1AT_HUMAN 48 418 SEQADV 3NE4 HIS A -29 UNP P01009 EXPRESSION TAG SEQADV 3NE4 HIS A -28 UNP P01009 EXPRESSION TAG SEQADV 3NE4 HIS A -27 UNP P01009 EXPRESSION TAG SEQADV 3NE4 HIS A -26 UNP P01009 EXPRESSION TAG SEQADV 3NE4 HIS A -25 UNP P01009 EXPRESSION TAG SEQADV 3NE4 HIS A -24 UNP P01009 EXPRESSION TAG SEQADV 3NE4 MET A -23 UNP P01009 EXPRESSION TAG SEQADV 3NE4 PRO A -22 UNP P01009 EXPRESSION TAG SEQADV 3NE4 SER A -21 UNP P01009 EXPRESSION TAG SEQADV 3NE4 SER A -20 UNP P01009 EXPRESSION TAG SEQADV 3NE4 VAL A -19 UNP P01009 EXPRESSION TAG SEQADV 3NE4 SER A -18 UNP P01009 EXPRESSION TAG SEQADV 3NE4 TRP A -17 UNP P01009 EXPRESSION TAG SEQADV 3NE4 GLY A -16 UNP P01009 EXPRESSION TAG SEQADV 3NE4 ILE A -15 UNP P01009 EXPRESSION TAG SEQADV 3NE4 LEU A -14 UNP P01009 EXPRESSION TAG SEQADV 3NE4 LEU A -13 UNP P01009 EXPRESSION TAG SEQADV 3NE4 LEU A -12 UNP P01009 EXPRESSION TAG SEQADV 3NE4 ALA A -11 UNP P01009 EXPRESSION TAG SEQADV 3NE4 GLY A -10 UNP P01009 EXPRESSION TAG SEQADV 3NE4 LEU A -9 UNP P01009 EXPRESSION TAG SEQADV 3NE4 CYS A -8 UNP P01009 EXPRESSION TAG SEQADV 3NE4 CYS A -7 UNP P01009 EXPRESSION TAG SEQADV 3NE4 LEU A -6 UNP P01009 EXPRESSION TAG SEQADV 3NE4 VAL A -5 UNP P01009 EXPRESSION TAG SEQADV 3NE4 PRO A -4 UNP P01009 EXPRESSION TAG SEQADV 3NE4 VAL A -3 UNP P01009 EXPRESSION TAG SEQADV 3NE4 SER A -2 UNP P01009 EXPRESSION TAG SEQADV 3NE4 LEU A -1 UNP P01009 EXPRESSION TAG SEQADV 3NE4 ALA A 0 UNP P01009 EXPRESSION TAG SEQADV 3NE4 GLU A 1 UNP P01009 EXPRESSION TAG SEQADV 3NE4 ASP A 2 UNP P01009 EXPRESSION TAG SEQADV 3NE4 PRO A 3 UNP P01009 EXPRESSION TAG SEQADV 3NE4 GLN A 4 UNP P01009 EXPRESSION TAG SEQADV 3NE4 GLY A 5 UNP P01009 EXPRESSION TAG SEQADV 3NE4 ASP A 6 UNP P01009 EXPRESSION TAG SEQADV 3NE4 ALA A 7 UNP P01009 EXPRESSION TAG SEQADV 3NE4 ALA A 8 UNP P01009 EXPRESSION TAG SEQADV 3NE4 GLN A 9 UNP P01009 EXPRESSION TAG SEQADV 3NE4 LYS A 10 UNP P01009 EXPRESSION TAG SEQADV 3NE4 THR A 11 UNP P01009 EXPRESSION TAG SEQADV 3NE4 ASP A 12 UNP P01009 EXPRESSION TAG SEQADV 3NE4 THR A 13 UNP P01009 EXPRESSION TAG SEQADV 3NE4 SER A 14 UNP P01009 EXPRESSION TAG SEQADV 3NE4 HIS A 15 UNP P01009 EXPRESSION TAG SEQADV 3NE4 HIS A 16 UNP P01009 EXPRESSION TAG SEQADV 3NE4 ASP A 17 UNP P01009 EXPRESSION TAG SEQADV 3NE4 GLN A 18 UNP P01009 EXPRESSION TAG SEQADV 3NE4 ASP A 19 UNP P01009 EXPRESSION TAG SEQADV 3NE4 HIS A 20 UNP P01009 EXPRESSION TAG SEQADV 3NE4 PRO A 21 UNP P01009 EXPRESSION TAG SEQADV 3NE4 THR A 22 UNP P01009 EXPRESSION TAG SEQADV 3NE4 PHE A 23 UNP P01009 EXPRESSION TAG SEQRES 1 A 424 HIS HIS HIS HIS HIS HIS MET PRO SER SER VAL SER TRP SEQRES 2 A 424 GLY ILE LEU LEU LEU ALA GLY LEU CYS CYS LEU VAL PRO SEQRES 3 A 424 VAL SER LEU ALA GLU ASP PRO GLN GLY ASP ALA ALA GLN SEQRES 4 A 424 LYS THR ASP THR SER HIS HIS ASP GLN ASP HIS PRO THR SEQRES 5 A 424 PHE ASN LYS ILE THR PRO ASN LEU ALA GLU PHE ALA PHE SEQRES 6 A 424 SER LEU TYR ARG GLN LEU ALA HIS GLN SER ASN SER THR SEQRES 7 A 424 ASN ILE PHE PHE SER PRO VAL SER ILE ALA THR ALA PHE SEQRES 8 A 424 ALA MET LEU SER LEU GLY THR LYS ALA ASP THR HIS ASP SEQRES 9 A 424 GLU ILE LEU GLU GLY LEU ASN PHE ASN LEU THR GLU ILE SEQRES 10 A 424 PRO GLU ALA GLN ILE HIS GLU GLY PHE GLN GLU LEU LEU SEQRES 11 A 424 ARG THR LEU ASN GLN PRO ASP SER GLN LEU GLN LEU THR SEQRES 12 A 424 THR GLY ASN GLY LEU PHE LEU SER GLU GLY LEU LYS LEU SEQRES 13 A 424 VAL ASP LYS PHE LEU GLU ASP VAL LYS LYS LEU TYR HIS SEQRES 14 A 424 SER GLU ALA PHE THR VAL ASN PHE GLY ASP THR GLU GLU SEQRES 15 A 424 ALA LYS LYS GLN ILE ASN ASP TYR VAL GLU LYS GLY THR SEQRES 16 A 424 GLN GLY LYS ILE VAL ASP LEU VAL LYS GLU LEU ASP ARG SEQRES 17 A 424 ASP THR VAL PHE ALA LEU VAL ASN TYR ILE PHE PHE LYS SEQRES 18 A 424 GLY LYS TRP GLU ARG PRO PHE GLU VAL LYS ASP THR GLU SEQRES 19 A 424 GLU GLU ASP PHE HIS VAL ASP GLN VAL THR THR VAL LYS SEQRES 20 A 424 VAL PRO MET MET LYS ARG LEU GLY MET PHE ASN ILE GLN SEQRES 21 A 424 HIS CYS LYS LYS LEU SER SER TRP VAL LEU LEU MET LYS SEQRES 22 A 424 TYR LEU GLY ASN ALA THR ALA ILE PHE PHE LEU PRO ASP SEQRES 23 A 424 GLU GLY LYS LEU GLN HIS LEU GLU ASN GLU LEU THR HIS SEQRES 24 A 424 ASP ILE ILE THR LYS PHE LEU GLU ASN GLU ASP ARG ARG SEQRES 25 A 424 SER ALA SER LEU HIS LEU PRO LYS LEU SER ILE THR GLY SEQRES 26 A 424 THR TYR ASP LEU LYS SER VAL LEU GLY GLN LEU GLY ILE SEQRES 27 A 424 THR LYS VAL PHE SER ASN GLY ALA ASP LEU SER GLY VAL SEQRES 28 A 424 THR GLU GLU ALA PRO LEU LYS LEU SER LYS ALA VAL HIS SEQRES 29 A 424 LYS ALA VAL LEU THR ILE ASP GLU LYS GLY THR GLU ALA SEQRES 30 A 424 ALA GLY ALA MET PHE LEU GLU ALA ILE PRO MET SER ILE SEQRES 31 A 424 PRO PRO GLU VAL LYS PHE ASN LYS PRO PHE VAL PHE LEU SEQRES 32 A 424 MET ILE GLU GLN ASN THR LYS SER PRO LEU PHE MET GLY SEQRES 33 A 424 LYS VAL VAL ASN PRO THR GLN LYS FORMUL 2 HOH *217(H2 O) HELIX 1 1 ILE A 26 SER A 45 1 20 HELIX 2 2 SER A 53 LEU A 66 1 14 HELIX 3 3 LYS A 69 LEU A 80 1 12 HELIX 4 4 PRO A 88 ASN A 104 1 17 HELIX 5 5 VAL A 127 LYS A 136 1 10 HELIX 6 6 ASP A 149 THR A 165 1 17 HELIX 7 7 GLU A 199 THR A 203 5 5 HELIX 8 8 LYS A 259 LEU A 267 1 9 HELIX 9 9 THR A 268 ASN A 278 1 11 HELIX 10 10 LEU A 299 LEU A 306 1 8 HELIX 11 11 THR A 309 SER A 313 5 5 SHEET 1 A 7 ILE A 50 PHE A 52 0 SHEET 2 A 7 PRO A 382 VAL A 388 -1 O LYS A 387 N ILE A 50 SHEET 3 A 7 PHE A 370 GLU A 376 -1 N PHE A 370 O VAL A 388 SHEET 4 A 7 ALA A 248 PRO A 255 -1 N ILE A 251 O LEU A 373 SHEET 5 A 7 SER A 237 TYR A 244 -1 N LEU A 240 O PHE A 252 SHEET 6 A 7 THR A 214 CYS A 232 -1 N CYS A 232 O SER A 237 SHEET 7 A 7 GLU A 204 ASP A 211 -1 N PHE A 208 O VAL A 216 SHEET 1 B 8 ILE A 50 PHE A 52 0 SHEET 2 B 8 PRO A 382 VAL A 388 -1 O LYS A 387 N ILE A 50 SHEET 3 B 8 PHE A 370 GLU A 376 -1 N PHE A 370 O VAL A 388 SHEET 4 B 8 ALA A 248 PRO A 255 -1 N ILE A 251 O LEU A 373 SHEET 5 B 8 SER A 237 TYR A 244 -1 N LEU A 240 O PHE A 252 SHEET 6 B 8 THR A 214 CYS A 232 -1 N CYS A 232 O SER A 237 SHEET 7 B 8 ARG A 282 PRO A 289 -1 O ARG A 282 N PHE A 227 SHEET 8 B 8 GLU A 363 LYS A 365 1 O VAL A 364 N HIS A 287 SHEET 1 C 5 GLU A 141 VAL A 145 0 SHEET 2 C 5 THR A 113 SER A 121 1 N LEU A 118 O PHE A 143 SHEET 3 C 5 PHE A 182 LYS A 191 -1 O VAL A 185 N GLY A 117 SHEET 4 C 5 LYS A 331 ILE A 340 1 O VAL A 333 N ASN A 186 SHEET 5 C 5 LEU A 291 ASP A 298 -1 N TYR A 297 O HIS A 334 CRYST1 114.380 38.940 88.830 90.00 104.29 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008743 0.000000 0.002227 0.00000 SCALE2 0.000000 0.025681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011617 0.00000