HEADER TRANSFERASE 08-JUN-10 3NE7 TITLE CRYSTAL STRUCTURE OF PAIA N-ACETYLTRANSFERASE FROM THERMOPLASMA TITLE 2 ACIDOPHILUM IN COMPLEX WITH COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 2303; SOURCE 4 GENE: TA0374; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS COENZYME A, STRUCTURAL GENOMICS, MCSG, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,S.CLANCY, AUTHOR 2 A.JOACHIMIAK,F.W.ANDERSON,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (MCSG) REVDAT 6 22-NOV-23 3NE7 1 REMARK REVDAT 5 06-SEP-23 3NE7 1 REMARK LINK REVDAT 4 08-NOV-17 3NE7 1 REMARK REVDAT 3 27-JUL-11 3NE7 1 JRNL REVDAT 2 06-JUL-11 3NE7 1 JRNL REVDAT 1 28-JUL-10 3NE7 0 JRNL AUTH E.V.FILIPPOVA,L.SHUVALOVA,G.MINASOV,O.KIRYUKHINA,Y.ZHANG, JRNL AUTH 2 S.CLANCY,I.RADHAKRISHNAN,A.JOACHIMIAK,W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURE OF THE NOVEL PAIA N-ACETYLTRANSFERASE FROM JRNL TITL 2 THERMOPLASMA ACIDOPHILUM INVOLVED IN THE NEGATIVE CONTROL OF JRNL TITL 3 SPORULATION AND DEGRADATIVE ENZYME PRODUCTION. JRNL REF PROTEINS V. 79 2566 2011 JRNL REFN ISSN 0887-3585 JRNL PMID 21633970 JRNL DOI 10.1002/PROT.23062 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0051 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 10245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 492 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 684 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.968 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1419 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1003 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1904 ; 1.601 ; 2.029 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2444 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 158 ; 5.899 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;36.452 ;24.098 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 277 ;15.081 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;17.544 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 204 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1471 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 282 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 788 ; 0.810 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 324 ; 0.173 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1271 ; 1.580 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 631 ; 2.524 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 633 ; 4.018 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 159 REMARK 3 ORIGIN FOR THE GROUP (A): -16.7176 6.0377 -6.0674 REMARK 3 T TENSOR REMARK 3 T11: 0.1321 T22: 0.0413 REMARK 3 T33: 0.0304 T12: -0.0026 REMARK 3 T13: -0.0464 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.6420 L22: 4.5834 REMARK 3 L33: 1.1336 L12: -0.0626 REMARK 3 L13: -0.0240 L23: -0.7347 REMARK 3 S TENSOR REMARK 3 S11: 0.0983 S12: -0.0285 S13: 0.0621 REMARK 3 S21: -0.0326 S22: -0.1621 S23: -0.0411 REMARK 3 S31: -0.1892 S32: 0.0403 S33: 0.0637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3NE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059717. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10296 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 55.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : 0.15100 REMARK 200 FOR THE DATA SET : 33.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : 0.83200 REMARK 200 R SYM FOR SHELL (I) : 0.83200 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MOLECULAR REPLACEMENT REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3F0A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% GLYCEROL, 1.5 M AMMONIUM SULFATE, REMARK 280 0.1 M TRIS, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.31400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.61200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.61200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.97100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.61200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.61200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.65700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.61200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.61200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.97100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.61200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.61200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.65700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.31400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A 160 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 45 41.31 -94.22 REMARK 500 LEU A 61 -124.79 -94.81 REMARK 500 SER A 72 6.83 81.87 REMARK 500 ALA A 84 -132.83 62.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 160 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 100 NE2 REMARK 620 2 COA A 161 O8A 112.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 165 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC61169.1 RELATED DB: TARGETDB REMARK 900 RELATED ID: 3F0A RELATED DB: PDB REMARK 900 RELATED ID: 3FIX RELATED DB: PDB REMARK 900 RELATED ID: 3K9U RELATED DB: PDB DBREF 3NE7 A 1 159 UNP Q9HL57 Q9HL57_THEAC 1 159 SEQRES 1 A 159 MSE SER ILE GLU ILE ARG LYS LEU SER ILE GLU ASP LEU SEQRES 2 A 159 GLU THR LEU ILE GLU VAL ALA ARG GLU SER TRP LYS TRP SEQRES 3 A 159 THR TYR ALA GLY ILE TYR SER GLU GLU TYR ILE GLU SER SEQRES 4 A 159 TRP ILE ARG GLU LYS TYR SER LYS GLU LYS LEU LEU ASN SEQRES 5 A 159 GLU ILE VAL ARG SER GLN SER ASN LEU ASP ILE LEU PHE SEQRES 6 A 159 LEU GLY ALA PHE ALA ASP SER THR LEU ILE GLY PHE ILE SEQRES 7 A 159 GLU LEU LYS ILE ILE ALA ASN LYS ALA GLU LEU LEU ARG SEQRES 8 A 159 LEU TYR LEU LYS PRO GLU TYR THR HIS LYS LYS ILE GLY SEQRES 9 A 159 LYS THR LEU LEU LEU GLU ALA GLU LYS ILE MSE LYS LYS SEQRES 10 A 159 LYS GLY ILE LEU GLU CYS ARG LEU TYR VAL HIS ARG GLN SEQRES 11 A 159 ASN SER VAL GLY PHE SER PHE TYR TYR LYS ASN GLY PHE SEQRES 12 A 159 LYS VAL GLU ASP THR ASP GLY SER ASP PHE ILE MSE GLU SEQRES 13 A 159 LYS LYS TYR MODRES 3NE7 MSE A 1 MET SELENOMETHIONINE MODRES 3NE7 MSE A 115 MET SELENOMETHIONINE MODRES 3NE7 MSE A 155 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 115 8 HET MSE A 155 8 HET NI A 160 1 HET COA A 161 51 HET BME A 162 4 HET BME A 163 4 HET SO4 A 164 5 HET GOL A 165 6 HET UNL A 166 6 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION HETNAM COA COENZYME A HETNAM BME BETA-MERCAPTOETHANOL HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM UNL UNKNOWN LIGAND HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 NI NI 2+ FORMUL 3 COA C21 H36 N7 O16 P3 S FORMUL 4 BME 2(C2 H6 O S) FORMUL 6 SO4 O4 S 2- FORMUL 7 GOL C3 H8 O3 FORMUL 9 HOH *48(H2 O) HELIX 1 1 SER A 9 GLU A 11 5 3 HELIX 2 2 ASP A 12 TYR A 28 1 17 HELIX 3 3 SER A 33 TYR A 45 1 13 HELIX 4 4 SER A 46 SER A 59 1 14 HELIX 5 5 PRO A 96 THR A 99 5 4 HELIX 6 6 LYS A 102 LYS A 118 1 17 HELIX 7 7 ASN A 131 LYS A 140 1 10 SHEET 1 A 7 ILE A 3 LYS A 7 0 SHEET 2 A 7 ILE A 63 ALA A 70 -1 O PHE A 69 N GLU A 4 SHEET 3 A 7 THR A 73 ILE A 83 -1 O THR A 73 N ALA A 70 SHEET 4 A 7 LYS A 86 LEU A 94 -1 O GLU A 88 N LYS A 81 SHEET 5 A 7 GLU A 122 HIS A 128 1 O ARG A 124 N LEU A 89 SHEET 6 A 7 ASP A 152 LYS A 158 -1 O PHE A 153 N VAL A 127 SHEET 7 A 7 LYS A 144 ASP A 149 -1 N GLU A 146 O ILE A 154 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C ILE A 114 N MSE A 115 1555 1555 1.33 LINK C MSE A 115 N LYS A 116 1555 1555 1.33 LINK C ILE A 154 N MSE A 155 1555 1555 1.33 LINK C MSE A 155 N GLU A 156 1555 1555 1.32 LINK S1PACOA A 161 S2 BME A 162 1555 1555 1.98 LINK NE2 HIS A 100 NI NI A 160 1555 1555 2.01 LINK NI NI A 160 O8A COA A 161 1555 1555 1.90 SITE 1 AC1 2 HIS A 100 COA A 161 SITE 1 AC2 32 TRP A 26 THR A 27 TYR A 28 LEU A 92 SITE 2 AC2 32 TYR A 93 LEU A 94 THR A 99 HIS A 100 SITE 3 AC2 32 LYS A 101 LYS A 102 ILE A 103 GLY A 104 SITE 4 AC2 32 LYS A 105 VAL A 127 ASN A 131 GLY A 134 SITE 5 AC2 32 SER A 136 PHE A 137 TYR A 138 LYS A 140 SITE 6 AC2 32 NI A 160 BME A 162 GOL A 165 HOH A 173 SITE 7 AC2 32 HOH A 174 HOH A 187 HOH A 196 HOH A 200 SITE 8 AC2 32 HOH A 202 HOH A 205 HOH A 206 HOH A 214 SITE 1 AC3 7 LEU A 89 LEU A 90 ARG A 91 LEU A 92 SITE 2 AC3 7 TYR A 126 TYR A 138 COA A 161 SITE 1 AC4 5 LEU A 80 MSE A 115 ILE A 120 CYS A 123 SITE 2 AC4 5 TYR A 159 SITE 1 AC5 7 TRP A 24 TRP A 40 LYS A 44 TYR A 45 SITE 2 AC5 7 ARG A 91 HOH A 168 HOH A 172 SITE 1 AC6 7 LYS A 102 LYS A 105 PHE A 137 ASN A 141 SITE 2 AC6 7 COA A 161 HOH A 174 HOH A 187 CRYST1 69.224 69.224 90.628 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011034 0.00000 HETATM 1 N MSE A 1 -10.291 0.184 14.934 1.00 81.80 N ANISOU 1 N MSE A 1 13540 9752 7785 -1091 -2443 686 N HETATM 2 CA MSE A 1 -10.145 1.516 14.271 1.00 81.47 C ANISOU 2 CA MSE A 1 13406 9684 7863 -1122 -2456 559 C HETATM 3 C MSE A 1 -11.474 2.275 14.204 1.00 78.42 C ANISOU 3 C MSE A 1 13187 9293 7316 -1039 -2084 406 C HETATM 4 O MSE A 1 -12.555 1.678 14.095 1.00 77.65 O ANISOU 4 O MSE A 1 13065 9251 7186 -937 -1750 409 O HETATM 5 CB MSE A 1 -9.566 1.376 12.848 1.00 80.41 C ANISOU 5 CB MSE A 1 12767 9623 8161 -1110 -2459 610 C HETATM 6 CG MSE A 1 -10.309 0.368 11.954 1.00 83.23 C ANISOU 6 CG MSE A 1 12843 10093 8688 -993 -2143 650 C HETATM 7 SE MSE A 1 -10.274 0.720 9.983 1.00 94.09 SE ANISOU 7 SE MSE A 1 13735 11544 10470 -932 -1961 614 SE HETATM 8 CE MSE A 1 -11.599 -0.678 9.466 1.00 86.89 C ANISOU 8 CE MSE A 1 12690 10731 9593 -794 -1595 638 C