data_3NEA # _entry.id 3NEA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NEA pdb_00003nea 10.2210/pdb3nea/pdb RCSB RCSB059720 ? ? WWPDB D_1000059720 ? ? # _pdbx_database_status.entry_id 3NEA _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-06-08 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lam, R.' 1 'McGrath, T.E.' 2 'Romanov, V.' 3 'Gothe, S.A.' 4 'Peddi, S.R.' 5 'Razumova, E.' 6 'Lipman, R.S.' 7 'Branstrom, A.A.' 8 'Chirgadze, N.Y.' 9 # _citation.id primary _citation.title 'Structure of Francisella tularensis peptidyl-tRNA hydrolase.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 67 _citation.page_first 446 _citation.page_last 449 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21505237 _citation.pdbx_database_id_DOI 10.1107/S174430911100515X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Clarke, T.E.' 1 ? primary 'Romanov, V.' 2 ? primary 'Lam, R.' 3 ? primary 'Gothe, S.A.' 4 ? primary 'Peddi, S.R.' 5 ? primary 'Razumova, E.B.' 6 ? primary 'Lipman, R.S.' 7 ? primary 'Branstrom, A.A.' 8 ? primary 'Chirgadze, N.Y.' 9 ? # _cell.length_a 60.683 _cell.length_b 93.043 _cell.length_c 33.027 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3NEA _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 3NEA _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidyl-tRNA hydrolase' 22838.969 1 3.1.1.29 ? 'UNP Residues 1-188' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 4 water nat water 18.015 51 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name PTH # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSHHHHHHSSGLVPRGSHMPKIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVV LVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHLGTNDYLRLRIGIGHPG HKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINYKLEPVMQKL ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSHHHHHHSSGLVPRGSHMPKIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVV LVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHLGTNDYLRLRIGIGHPG HKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINYKLEPVMQKL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 SER n 1 11 SER n 1 12 GLY n 1 13 LEU n 1 14 VAL n 1 15 PRO n 1 16 ARG n 1 17 GLY n 1 18 SER n 1 19 HIS n 1 20 MET n 1 21 PRO n 1 22 LYS n 1 23 ILE n 1 24 LYS n 1 25 MET n 1 26 ILE n 1 27 ILE n 1 28 GLY n 1 29 LEU n 1 30 GLY n 1 31 ASN n 1 32 ILE n 1 33 GLY n 1 34 LYS n 1 35 GLU n 1 36 TYR n 1 37 GLN n 1 38 ASP n 1 39 THR n 1 40 ARG n 1 41 HIS n 1 42 ASN n 1 43 VAL n 1 44 GLY n 1 45 GLU n 1 46 TRP n 1 47 PHE n 1 48 ILE n 1 49 ALA n 1 50 LYS n 1 51 ILE n 1 52 ALA n 1 53 GLN n 1 54 ASP n 1 55 ASN n 1 56 ASN n 1 57 GLN n 1 58 SER n 1 59 PHE n 1 60 SER n 1 61 SER n 1 62 ASN n 1 63 PRO n 1 64 LYS n 1 65 LEU n 1 66 ASN n 1 67 CYS n 1 68 ASN n 1 69 LEU n 1 70 ALA n 1 71 LYS n 1 72 VAL n 1 73 SER n 1 74 ILE n 1 75 ASP n 1 76 TYR n 1 77 ASN n 1 78 ASN n 1 79 VAL n 1 80 VAL n 1 81 LEU n 1 82 VAL n 1 83 PHE n 1 84 PRO n 1 85 THR n 1 86 THR n 1 87 TYR n 1 88 MET n 1 89 ASN n 1 90 ASN n 1 91 SER n 1 92 GLY n 1 93 LEU n 1 94 ALA n 1 95 VAL n 1 96 SER n 1 97 LYS n 1 98 VAL n 1 99 ALA n 1 100 ASN n 1 101 PHE n 1 102 TYR n 1 103 LYS n 1 104 ILE n 1 105 ALA n 1 106 PRO n 1 107 ALA n 1 108 GLU n 1 109 ILE n 1 110 LEU n 1 111 VAL n 1 112 VAL n 1 113 HIS n 1 114 ASP n 1 115 GLU n 1 116 LEU n 1 117 ASP n 1 118 ILE n 1 119 ASP n 1 120 SER n 1 121 GLY n 1 122 GLU n 1 123 ILE n 1 124 ARG n 1 125 LEU n 1 126 LYS n 1 127 LYS n 1 128 GLY n 1 129 GLY n 1 130 GLY n 1 131 HIS n 1 132 GLY n 1 133 GLY n 1 134 HIS n 1 135 ASN n 1 136 GLY n 1 137 LEU n 1 138 ARG n 1 139 SER n 1 140 ILE n 1 141 ASN n 1 142 GLN n 1 143 HIS n 1 144 LEU n 1 145 GLY n 1 146 THR n 1 147 ASN n 1 148 ASP n 1 149 TYR n 1 150 LEU n 1 151 ARG n 1 152 LEU n 1 153 ARG n 1 154 ILE n 1 155 GLY n 1 156 ILE n 1 157 GLY n 1 158 HIS n 1 159 PRO n 1 160 GLY n 1 161 HIS n 1 162 LYS n 1 163 SER n 1 164 LYS n 1 165 VAL n 1 166 ALA n 1 167 ASN n 1 168 TYR n 1 169 VAL n 1 170 LEU n 1 171 SER n 1 172 ASN n 1 173 PRO n 1 174 SER n 1 175 ILE n 1 176 ALA n 1 177 GLN n 1 178 LYS n 1 179 LYS n 1 180 ASP n 1 181 ILE n 1 182 ASP n 1 183 SER n 1 184 ALA n 1 185 ILE n 1 186 ASP n 1 187 ASN n 1 188 GLY n 1 189 ILE n 1 190 CYS n 1 191 PHE n 1 192 LEU n 1 193 ASP n 1 194 ASP n 1 195 ILE n 1 196 ILE n 1 197 ASN n 1 198 TYR n 1 199 LYS n 1 200 LEU n 1 201 GLU n 1 202 PRO n 1 203 VAL n 1 204 MET n 1 205 GLN n 1 206 LYS n 1 207 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'FTT_0680c, pth' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Francisella tularensis subsp. tularensis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 119856 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) CodonPlus RIPL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PTH_FRATT _struct_ref.pdbx_db_accession Q5NGZ6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MPKIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVA NFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHLGTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKK DIDSAIDNGICFLDDIINYKLEPVMQKL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3NEA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 20 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 207 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5NGZ6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 188 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 188 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NEA GLY A 1 ? UNP Q5NGZ6 ? ? 'expression tag' -18 1 1 3NEA SER A 2 ? UNP Q5NGZ6 ? ? 'expression tag' -17 2 1 3NEA SER A 3 ? UNP Q5NGZ6 ? ? 'expression tag' -16 3 1 3NEA HIS A 4 ? UNP Q5NGZ6 ? ? 'expression tag' -15 4 1 3NEA HIS A 5 ? UNP Q5NGZ6 ? ? 'expression tag' -14 5 1 3NEA HIS A 6 ? UNP Q5NGZ6 ? ? 'expression tag' -13 6 1 3NEA HIS A 7 ? UNP Q5NGZ6 ? ? 'expression tag' -12 7 1 3NEA HIS A 8 ? UNP Q5NGZ6 ? ? 'expression tag' -11 8 1 3NEA HIS A 9 ? UNP Q5NGZ6 ? ? 'expression tag' -10 9 1 3NEA SER A 10 ? UNP Q5NGZ6 ? ? 'expression tag' -9 10 1 3NEA SER A 11 ? UNP Q5NGZ6 ? ? 'expression tag' -8 11 1 3NEA GLY A 12 ? UNP Q5NGZ6 ? ? 'expression tag' -7 12 1 3NEA LEU A 13 ? UNP Q5NGZ6 ? ? 'expression tag' -6 13 1 3NEA VAL A 14 ? UNP Q5NGZ6 ? ? 'expression tag' -5 14 1 3NEA PRO A 15 ? UNP Q5NGZ6 ? ? 'expression tag' -4 15 1 3NEA ARG A 16 ? UNP Q5NGZ6 ? ? 'expression tag' -3 16 1 3NEA GLY A 17 ? UNP Q5NGZ6 ? ? 'expression tag' -2 17 1 3NEA SER A 18 ? UNP Q5NGZ6 ? ? 'expression tag' -1 18 1 3NEA HIS A 19 ? UNP Q5NGZ6 ? ? 'expression tag' 0 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3NEA _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 39.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '25% PEG3350, 0.2M MgCl2, 0.1M Bis-Tris pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 1 3 ? ? 1 4 ? ? 1 5 ? ? 1 6 ? ? 1 7 ? ? 1 8 ? ? 1 9 ? ? 1 10 ? ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2007-08-28 _diffrn_detector.details 'VariMax HR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'VariMax HR' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E+ SUPERBRIGHT' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3NEA _reflns.d_resolution_high 2.250 _reflns.d_resolution_low 50.000 _reflns.number_obs 9412 _reflns.pdbx_Rmerge_I_obs 0.140 _reflns.pdbx_netI_over_sigmaI 6.000 _reflns.pdbx_chi_squared 1.022 _reflns.pdbx_redundancy 6.600 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.25 2.33 ? ? ? 0.490 ? ? 1.030 6.70 ? 906 100.00 1 1 2.33 2.42 ? ? ? 0.382 ? ? 1.002 6.70 ? 920 100.00 2 2 2.42 2.53 ? ? ? 0.367 ? ? 1.043 6.70 ? 931 100.00 3 3 2.53 2.67 ? ? ? 0.302 ? ? 1.044 6.70 ? 896 100.00 4 4 2.67 2.83 ? ? ? 0.247 ? ? 1.039 6.70 ? 936 100.00 5 5 2.83 3.05 ? ? ? 0.181 ? ? 1.047 6.70 ? 935 100.00 6 6 3.05 3.36 ? ? ? 0.122 ? ? 1.039 6.70 ? 933 100.00 7 7 3.36 3.85 ? ? ? 0.092 ? ? 1.024 6.70 ? 950 100.00 8 8 3.85 4.85 ? ? ? 0.065 ? ? 0.970 6.60 ? 967 100.00 9 9 4.85 50.00 ? ? ? 0.065 ? ? 0.981 6.10 ? 1038 99.70 10 10 # _refine.entry_id 3NEA _refine.ls_d_res_high 2.250 _refine.ls_d_res_low 33.030 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.970 _refine.ls_number_reflns_obs 9380 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.193 _refine.ls_R_factor_R_work 0.190 _refine.ls_wR_factor_R_work 0.163 _refine.ls_R_factor_R_free 0.248 _refine.ls_wR_factor_R_free 0.210 _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 438 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.057 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.370 _refine.aniso_B[2][2] -0.110 _refine.aniso_B[3][3] 0.480 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.894 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.234 _refine.overall_SU_ML 0.164 _refine.overall_SU_B 6.620 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 2PTH' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 55.76 _refine.B_iso_min 10.59 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R 0.320 _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1450 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 1522 _refine_hist.d_res_high 2.250 _refine_hist.d_res_low 33.030 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1501 0.013 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2019 1.291 1.956 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 188 5.863 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 69 42.208 25.362 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 264 16.728 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 21.475 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 223 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1121 0.006 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 928 0.575 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1495 1.096 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 573 1.794 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 523 2.916 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 2.308 2.250 673 99.703 632 0.204 39 0.305 . . . . . 'X-RAY DIFFRACTION' 20 2.371 2.308 669 100.000 642 0.216 27 0.287 . . . . . 'X-RAY DIFFRACTION' 20 2.439 2.371 616 100.000 586 0.219 30 0.316 . . . . . 'X-RAY DIFFRACTION' 20 2.514 2.439 635 100.000 607 0.206 28 0.288 . . . . . 'X-RAY DIFFRACTION' 20 2.596 2.514 596 100.000 567 0.215 29 0.226 . . . . . 'X-RAY DIFFRACTION' 20 2.687 2.596 585 100.000 565 0.203 20 0.339 . . . . . 'X-RAY DIFFRACTION' 20 2.787 2.687 573 100.000 544 0.227 29 0.256 . . . . . 'X-RAY DIFFRACTION' 20 2.900 2.787 545 100.000 521 0.193 24 0.451 . . . . . 'X-RAY DIFFRACTION' 20 3.028 2.900 536 100.000 513 0.181 23 0.311 . . . . . 'X-RAY DIFFRACTION' 20 3.175 3.028 490 100.000 463 0.188 27 0.205 . . . . . 'X-RAY DIFFRACTION' 20 3.345 3.175 489 100.000 471 0.179 18 0.160 . . . . . 'X-RAY DIFFRACTION' 20 3.545 3.345 454 100.000 432 0.173 22 0.248 . . . . . 'X-RAY DIFFRACTION' 20 3.787 3.545 442 100.000 418 0.187 24 0.251 . . . . . 'X-RAY DIFFRACTION' 20 4.086 3.787 408 100.000 396 0.170 12 0.248 . . . . . 'X-RAY DIFFRACTION' 20 4.469 4.086 378 100.000 353 0.161 25 0.193 . . . . . 'X-RAY DIFFRACTION' 20 4.985 4.469 345 100.000 328 0.157 17 0.201 . . . . . 'X-RAY DIFFRACTION' 20 5.735 4.985 310 100.000 295 0.204 15 0.237 . . . . . 'X-RAY DIFFRACTION' 20 6.971 5.735 274 100.000 259 0.186 15 0.209 . . . . . 'X-RAY DIFFRACTION' 20 9.646 6.971 217 100.000 208 0.165 9 0.138 . . . . . 'X-RAY DIFFRACTION' 20 33.027 9.646 148 99.324 142 0.242 5 0.203 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3NEA _struct.title 'Crystal Structure of Peptidyl-tRNA hydrolase from Francisella tularensis' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NEA _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'hydrolase, peptidyl-tRNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 39 ? HIS A 41 ? THR A 20 HIS A 22 5 ? 3 HELX_P HELX_P2 2 ASN A 42 ? ASN A 55 ? ASN A 23 ASN A 36 1 ? 14 HELX_P HELX_P3 3 PRO A 63 ? LEU A 65 ? PRO A 44 LEU A 46 5 ? 3 HELX_P HELX_P4 4 TYR A 87 ? ASN A 89 ? TYR A 68 ASN A 70 5 ? 3 HELX_P HELX_P5 5 ASN A 90 ? LYS A 103 ? ASN A 71 LYS A 84 1 ? 14 HELX_P HELX_P6 6 ALA A 105 ? ALA A 107 ? ALA A 86 ALA A 88 5 ? 3 HELX_P HELX_P7 7 HIS A 134 ? GLY A 145 ? HIS A 115 GLY A 126 1 ? 12 HELX_P HELX_P8 8 HIS A 161 ? SER A 163 ? HIS A 142 SER A 144 5 ? 3 HELX_P HELX_P9 9 LYS A 164 ? LEU A 170 ? LYS A 145 LEU A 151 1 ? 7 HELX_P HELX_P10 10 SER A 174 ? PHE A 191 ? SER A 155 PHE A 172 1 ? 18 HELX_P HELX_P11 11 PHE A 191 ? ASN A 197 ? PHE A 172 ASN A 178 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 60 ? ASN A 62 ? SER A 41 ASN A 43 A 2 CYS A 67 ? ILE A 74 ? CYS A 48 ILE A 55 A 3 ASN A 77 ? PRO A 84 ? ASN A 58 PRO A 65 A 4 MET A 25 ? GLY A 28 ? MET A 6 GLY A 9 A 5 ILE A 109 ? GLU A 115 ? ILE A 90 GLU A 96 A 6 LEU A 150 ? GLY A 155 ? LEU A 131 GLY A 136 A 7 ILE A 123 ? LYS A 127 ? ILE A 104 LYS A 108 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 62 ? N ASN A 43 O CYS A 67 ? O CYS A 48 A 2 3 N ALA A 70 ? N ALA A 51 O LEU A 81 ? O LEU A 62 A 3 4 O VAL A 82 ? O VAL A 63 N GLY A 28 ? N GLY A 9 A 4 5 N ILE A 27 ? N ILE A 8 O LEU A 110 ? O LEU A 91 A 5 6 N VAL A 111 ? N VAL A 92 O LEU A 150 ? O LEU A 131 A 6 7 O ARG A 153 ? O ARG A 134 N ARG A 124 ? N ARG A 105 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 500 ? 2 'BINDING SITE FOR RESIDUE CL A 500' AC2 Software A EDO 510 ? 6 'BINDING SITE FOR RESIDUE EDO A 510' AC3 Software A EDO 511 ? 6 'BINDING SITE FOR RESIDUE EDO A 511' AC4 Software A EDO 512 ? 4 'BINDING SITE FOR RESIDUE EDO A 512' AC5 Software A EDO 513 ? 6 'BINDING SITE FOR RESIDUE EDO A 513' AC6 Software A EDO 514 ? 3 'BINDING SITE FOR RESIDUE EDO A 514' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 SER A 120 ? SER A 101 . ? 1_555 ? 2 AC1 2 GLN A 177 ? GLN A 158 . ? 1_555 ? 3 AC2 6 PHE A 59 ? PHE A 40 . ? 1_555 ? 4 AC2 6 SER A 61 ? SER A 42 . ? 1_555 ? 5 AC2 6 ASN A 68 ? ASN A 49 . ? 1_555 ? 6 AC2 6 LYS A 127 ? LYS A 108 . ? 1_556 ? 7 AC2 6 GLY A 128 ? GLY A 109 . ? 1_556 ? 8 AC2 6 ASP A 148 ? ASP A 129 . ? 1_556 ? 9 AC3 6 HIS A 41 ? HIS A 22 . ? 1_555 ? 10 AC3 6 GLY A 133 ? GLY A 114 . ? 1_555 ? 11 AC3 6 VAL A 165 ? VAL A 146 . ? 1_555 ? 12 AC3 6 HOH H . ? HOH A 214 . ? 4_444 ? 13 AC3 6 HOH H . ? HOH A 216 . ? 1_555 ? 14 AC3 6 HOH H . ? HOH A 218 . ? 1_555 ? 15 AC4 4 ASP A 54 ? ASP A 35 . ? 1_555 ? 16 AC4 4 ASN A 55 ? ASN A 36 . ? 1_555 ? 17 AC4 4 HIS A 161 ? HIS A 142 . ? 4_544 ? 18 AC4 4 ILE A 189 ? ILE A 170 . ? 1_555 ? 19 AC5 6 LYS A 24 ? LYS A 5 . ? 3_544 ? 20 AC5 6 ASP A 75 ? ASP A 56 . ? 4_444 ? 21 AC5 6 TYR A 76 ? TYR A 57 . ? 4_444 ? 22 AC5 6 TYR A 102 ? TYR A 83 . ? 3_544 ? 23 AC5 6 PRO A 159 ? PRO A 140 . ? 1_555 ? 24 AC5 6 LYS A 164 ? LYS A 145 . ? 1_555 ? 25 AC6 3 ASN A 62 ? ASN A 43 . ? 1_555 ? 26 AC6 3 PRO A 63 ? PRO A 44 . ? 1_555 ? 27 AC6 3 LYS A 64 ? LYS A 45 . ? 1_555 ? # _atom_sites.entry_id 3NEA _atom_sites.fract_transf_matrix[1][1] 0.016479 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010748 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030278 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -18 ? ? ? A . n A 1 2 SER 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 HIS 4 -15 ? ? ? A . n A 1 5 HIS 5 -14 ? ? ? A . n A 1 6 HIS 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 SER 10 -9 ? ? ? A . n A 1 11 SER 11 -8 ? ? ? A . n A 1 12 GLY 12 -7 ? ? ? A . n A 1 13 LEU 13 -6 ? ? ? A . n A 1 14 VAL 14 -5 ? ? ? A . n A 1 15 PRO 15 -4 ? ? ? A . n A 1 16 ARG 16 -3 ? ? ? A . n A 1 17 GLY 17 -2 ? ? ? A . n A 1 18 SER 18 -1 ? ? ? A . n A 1 19 HIS 19 0 ? ? ? A . n A 1 20 MET 20 1 ? ? ? A . n A 1 21 PRO 21 2 2 PRO PRO A . n A 1 22 LYS 22 3 3 LYS LYS A . n A 1 23 ILE 23 4 4 ILE ILE A . n A 1 24 LYS 24 5 5 LYS LYS A . n A 1 25 MET 25 6 6 MET MET A . n A 1 26 ILE 26 7 7 ILE ILE A . n A 1 27 ILE 27 8 8 ILE ILE A . n A 1 28 GLY 28 9 9 GLY GLY A . n A 1 29 LEU 29 10 10 LEU LEU A . n A 1 30 GLY 30 11 11 GLY GLY A . n A 1 31 ASN 31 12 12 ASN ASN A . n A 1 32 ILE 32 13 13 ILE ILE A . n A 1 33 GLY 33 14 14 GLY GLY A . n A 1 34 LYS 34 15 15 LYS LYS A . n A 1 35 GLU 35 16 16 GLU GLU A . n A 1 36 TYR 36 17 17 TYR TYR A . n A 1 37 GLN 37 18 18 GLN GLN A . n A 1 38 ASP 38 19 19 ASP ASP A . n A 1 39 THR 39 20 20 THR THR A . n A 1 40 ARG 40 21 21 ARG ARG A . n A 1 41 HIS 41 22 22 HIS HIS A . n A 1 42 ASN 42 23 23 ASN ASN A . n A 1 43 VAL 43 24 24 VAL VAL A . n A 1 44 GLY 44 25 25 GLY GLY A . n A 1 45 GLU 45 26 26 GLU GLU A . n A 1 46 TRP 46 27 27 TRP TRP A . n A 1 47 PHE 47 28 28 PHE PHE A . n A 1 48 ILE 48 29 29 ILE ILE A . n A 1 49 ALA 49 30 30 ALA ALA A . n A 1 50 LYS 50 31 31 LYS LYS A . n A 1 51 ILE 51 32 32 ILE ILE A . n A 1 52 ALA 52 33 33 ALA ALA A . n A 1 53 GLN 53 34 34 GLN GLN A . n A 1 54 ASP 54 35 35 ASP ASP A . n A 1 55 ASN 55 36 36 ASN ASN A . n A 1 56 ASN 56 37 37 ASN ASN A . n A 1 57 GLN 57 38 38 GLN GLN A . n A 1 58 SER 58 39 39 SER SER A . n A 1 59 PHE 59 40 40 PHE PHE A . n A 1 60 SER 60 41 41 SER SER A . n A 1 61 SER 61 42 42 SER SER A . n A 1 62 ASN 62 43 43 ASN ASN A . n A 1 63 PRO 63 44 44 PRO PRO A . n A 1 64 LYS 64 45 45 LYS LYS A . n A 1 65 LEU 65 46 46 LEU LEU A . n A 1 66 ASN 66 47 47 ASN ASN A . n A 1 67 CYS 67 48 48 CYS CYS A . n A 1 68 ASN 68 49 49 ASN ASN A . n A 1 69 LEU 69 50 50 LEU LEU A . n A 1 70 ALA 70 51 51 ALA ALA A . n A 1 71 LYS 71 52 52 LYS LYS A . n A 1 72 VAL 72 53 53 VAL VAL A . n A 1 73 SER 73 54 54 SER SER A . n A 1 74 ILE 74 55 55 ILE ILE A . n A 1 75 ASP 75 56 56 ASP ASP A . n A 1 76 TYR 76 57 57 TYR TYR A . n A 1 77 ASN 77 58 58 ASN ASN A . n A 1 78 ASN 78 59 59 ASN ASN A . n A 1 79 VAL 79 60 60 VAL VAL A . n A 1 80 VAL 80 61 61 VAL VAL A . n A 1 81 LEU 81 62 62 LEU LEU A . n A 1 82 VAL 82 63 63 VAL VAL A . n A 1 83 PHE 83 64 64 PHE PHE A . n A 1 84 PRO 84 65 65 PRO PRO A . n A 1 85 THR 85 66 66 THR THR A . n A 1 86 THR 86 67 67 THR THR A . n A 1 87 TYR 87 68 68 TYR TYR A . n A 1 88 MET 88 69 69 MET MET A . n A 1 89 ASN 89 70 70 ASN ASN A . n A 1 90 ASN 90 71 71 ASN ASN A . n A 1 91 SER 91 72 72 SER SER A . n A 1 92 GLY 92 73 73 GLY GLY A . n A 1 93 LEU 93 74 74 LEU LEU A . n A 1 94 ALA 94 75 75 ALA ALA A . n A 1 95 VAL 95 76 76 VAL VAL A . n A 1 96 SER 96 77 77 SER SER A . n A 1 97 LYS 97 78 78 LYS LYS A . n A 1 98 VAL 98 79 79 VAL VAL A . n A 1 99 ALA 99 80 80 ALA ALA A . n A 1 100 ASN 100 81 81 ASN ASN A . n A 1 101 PHE 101 82 82 PHE PHE A . n A 1 102 TYR 102 83 83 TYR TYR A . n A 1 103 LYS 103 84 84 LYS LYS A . n A 1 104 ILE 104 85 85 ILE ILE A . n A 1 105 ALA 105 86 86 ALA ALA A . n A 1 106 PRO 106 87 87 PRO PRO A . n A 1 107 ALA 107 88 88 ALA ALA A . n A 1 108 GLU 108 89 89 GLU GLU A . n A 1 109 ILE 109 90 90 ILE ILE A . n A 1 110 LEU 110 91 91 LEU LEU A . n A 1 111 VAL 111 92 92 VAL VAL A . n A 1 112 VAL 112 93 93 VAL VAL A . n A 1 113 HIS 113 94 94 HIS HIS A . n A 1 114 ASP 114 95 95 ASP ASP A . n A 1 115 GLU 115 96 96 GLU GLU A . n A 1 116 LEU 116 97 97 LEU LEU A . n A 1 117 ASP 117 98 98 ASP ASP A . n A 1 118 ILE 118 99 99 ILE ILE A . n A 1 119 ASP 119 100 100 ASP ASP A . n A 1 120 SER 120 101 101 SER SER A . n A 1 121 GLY 121 102 102 GLY GLY A . n A 1 122 GLU 122 103 103 GLU GLU A . n A 1 123 ILE 123 104 104 ILE ILE A . n A 1 124 ARG 124 105 105 ARG ARG A . n A 1 125 LEU 125 106 106 LEU LEU A . n A 1 126 LYS 126 107 107 LYS LYS A . n A 1 127 LYS 127 108 108 LYS LYS A . n A 1 128 GLY 128 109 109 GLY GLY A . n A 1 129 GLY 129 110 110 GLY GLY A . n A 1 130 GLY 130 111 111 GLY GLY A . n A 1 131 HIS 131 112 112 HIS HIS A . n A 1 132 GLY 132 113 113 GLY GLY A . n A 1 133 GLY 133 114 114 GLY GLY A . n A 1 134 HIS 134 115 115 HIS HIS A . n A 1 135 ASN 135 116 116 ASN ASN A . n A 1 136 GLY 136 117 117 GLY GLY A . n A 1 137 LEU 137 118 118 LEU LEU A . n A 1 138 ARG 138 119 119 ARG ARG A . n A 1 139 SER 139 120 120 SER SER A . n A 1 140 ILE 140 121 121 ILE ILE A . n A 1 141 ASN 141 122 122 ASN ASN A . n A 1 142 GLN 142 123 123 GLN GLN A . n A 1 143 HIS 143 124 124 HIS HIS A . n A 1 144 LEU 144 125 125 LEU LEU A . n A 1 145 GLY 145 126 126 GLY GLY A . n A 1 146 THR 146 127 127 THR THR A . n A 1 147 ASN 147 128 128 ASN ASN A . n A 1 148 ASP 148 129 129 ASP ASP A . n A 1 149 TYR 149 130 130 TYR TYR A . n A 1 150 LEU 150 131 131 LEU LEU A . n A 1 151 ARG 151 132 132 ARG ARG A . n A 1 152 LEU 152 133 133 LEU LEU A . n A 1 153 ARG 153 134 134 ARG ARG A . n A 1 154 ILE 154 135 135 ILE ILE A . n A 1 155 GLY 155 136 136 GLY GLY A . n A 1 156 ILE 156 137 137 ILE ILE A . n A 1 157 GLY 157 138 138 GLY GLY A . n A 1 158 HIS 158 139 139 HIS HIS A . n A 1 159 PRO 159 140 140 PRO PRO A . n A 1 160 GLY 160 141 141 GLY GLY A . n A 1 161 HIS 161 142 142 HIS HIS A . n A 1 162 LYS 162 143 143 LYS LYS A . n A 1 163 SER 163 144 144 SER SER A . n A 1 164 LYS 164 145 145 LYS LYS A . n A 1 165 VAL 165 146 146 VAL VAL A . n A 1 166 ALA 166 147 147 ALA ALA A . n A 1 167 ASN 167 148 148 ASN ASN A . n A 1 168 TYR 168 149 149 TYR TYR A . n A 1 169 VAL 169 150 150 VAL VAL A . n A 1 170 LEU 170 151 151 LEU LEU A . n A 1 171 SER 171 152 152 SER SER A . n A 1 172 ASN 172 153 153 ASN ASN A . n A 1 173 PRO 173 154 154 PRO PRO A . n A 1 174 SER 174 155 155 SER SER A . n A 1 175 ILE 175 156 156 ILE ILE A . n A 1 176 ALA 176 157 157 ALA ALA A . n A 1 177 GLN 177 158 158 GLN GLN A . n A 1 178 LYS 178 159 159 LYS LYS A . n A 1 179 LYS 179 160 160 LYS LYS A . n A 1 180 ASP 180 161 161 ASP ASP A . n A 1 181 ILE 181 162 162 ILE ILE A . n A 1 182 ASP 182 163 163 ASP ASP A . n A 1 183 SER 183 164 164 SER SER A . n A 1 184 ALA 184 165 165 ALA ALA A . n A 1 185 ILE 185 166 166 ILE ILE A . n A 1 186 ASP 186 167 167 ASP ASP A . n A 1 187 ASN 187 168 168 ASN ASN A . n A 1 188 GLY 188 169 169 GLY GLY A . n A 1 189 ILE 189 170 170 ILE ILE A . n A 1 190 CYS 190 171 171 CYS CYS A . n A 1 191 PHE 191 172 172 PHE PHE A . n A 1 192 LEU 192 173 173 LEU LEU A . n A 1 193 ASP 193 174 174 ASP ASP A . n A 1 194 ASP 194 175 175 ASP ASP A . n A 1 195 ILE 195 176 176 ILE ILE A . n A 1 196 ILE 196 177 177 ILE ILE A . n A 1 197 ASN 197 178 178 ASN ASN A . n A 1 198 TYR 198 179 179 TYR TYR A . n A 1 199 LYS 199 180 180 LYS LYS A . n A 1 200 LEU 200 181 181 LEU LEU A . n A 1 201 GLU 201 182 182 GLU GLU A . n A 1 202 PRO 202 183 183 PRO PRO A . n A 1 203 VAL 203 184 184 VAL VAL A . n A 1 204 MET 204 185 185 MET MET A . n A 1 205 GLN 205 186 186 GLN GLN A . n A 1 206 LYS 206 187 187 LYS LYS A . n A 1 207 LEU 207 188 188 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 500 500 CL CL A . C 3 EDO 1 510 510 EDO EDO A . D 3 EDO 1 511 511 EDO EDO A . E 3 EDO 1 512 512 EDO EDO A . F 3 EDO 1 513 513 EDO EDO A . G 3 EDO 1 514 514 EDO EDO A . H 4 HOH 1 189 1 HOH HOH A . H 4 HOH 2 190 2 HOH HOH A . H 4 HOH 3 191 3 HOH HOH A . H 4 HOH 4 192 4 HOH HOH A . H 4 HOH 5 193 5 HOH HOH A . H 4 HOH 6 194 6 HOH HOH A . H 4 HOH 7 195 7 HOH HOH A . H 4 HOH 8 196 8 HOH HOH A . H 4 HOH 9 197 9 HOH HOH A . H 4 HOH 10 198 10 HOH HOH A . H 4 HOH 11 199 11 HOH HOH A . H 4 HOH 12 200 12 HOH HOH A . H 4 HOH 13 201 13 HOH HOH A . H 4 HOH 14 202 14 HOH HOH A . H 4 HOH 15 203 15 HOH HOH A . H 4 HOH 16 204 16 HOH HOH A . H 4 HOH 17 205 17 HOH HOH A . H 4 HOH 18 206 18 HOH HOH A . H 4 HOH 19 207 19 HOH HOH A . H 4 HOH 20 208 20 HOH HOH A . H 4 HOH 21 209 21 HOH HOH A . H 4 HOH 22 210 22 HOH HOH A . H 4 HOH 23 211 23 HOH HOH A . H 4 HOH 24 212 24 HOH HOH A . H 4 HOH 25 213 25 HOH HOH A . H 4 HOH 26 214 26 HOH HOH A . H 4 HOH 27 215 27 HOH HOH A . H 4 HOH 28 216 28 HOH HOH A . H 4 HOH 29 217 29 HOH HOH A . H 4 HOH 30 218 30 HOH HOH A . H 4 HOH 31 219 31 HOH HOH A . H 4 HOH 32 220 32 HOH HOH A . H 4 HOH 33 221 33 HOH HOH A . H 4 HOH 34 222 34 HOH HOH A . H 4 HOH 35 223 35 HOH HOH A . H 4 HOH 36 224 36 HOH HOH A . H 4 HOH 37 225 37 HOH HOH A . H 4 HOH 38 226 38 HOH HOH A . H 4 HOH 39 227 39 HOH HOH A . H 4 HOH 40 228 40 HOH HOH A . H 4 HOH 41 229 41 HOH HOH A . H 4 HOH 42 230 42 HOH HOH A . H 4 HOH 43 231 43 HOH HOH A . H 4 HOH 44 232 44 HOH HOH A . H 4 HOH 45 233 45 HOH HOH A . H 4 HOH 46 234 46 HOH HOH A . H 4 HOH 47 235 47 HOH HOH A . H 4 HOH 48 236 48 HOH HOH A . H 4 HOH 49 237 49 HOH HOH A . H 4 HOH 50 238 50 HOH HOH A . H 4 HOH 51 239 51 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_phasing_MR.entry_id 3NEA _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.430 _pdbx_phasing_MR.d_res_low_rotation 31.130 _pdbx_phasing_MR.d_res_high_translation 2.430 _pdbx_phasing_MR.d_res_low_translation 31.130 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 4 REFMAC refmac_5.5.0109 24/04/2001 program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.100 'May. 21, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 CrystalClear . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 56 ? ? 61.96 -116.04 2 1 TYR A 68 ? ? 77.93 152.50 3 1 LEU A 181 ? ? -103.73 46.66 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 15 ? CG ? A LYS 34 CG 2 1 Y 1 A LYS 15 ? CD ? A LYS 34 CD 3 1 Y 1 A LYS 15 ? CE ? A LYS 34 CE 4 1 Y 1 A LYS 15 ? NZ ? A LYS 34 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -18 ? A GLY 1 2 1 Y 1 A SER -17 ? A SER 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A HIS -15 ? A HIS 4 5 1 Y 1 A HIS -14 ? A HIS 5 6 1 Y 1 A HIS -13 ? A HIS 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A SER -9 ? A SER 10 11 1 Y 1 A SER -8 ? A SER 11 12 1 Y 1 A GLY -7 ? A GLY 12 13 1 Y 1 A LEU -6 ? A LEU 13 14 1 Y 1 A VAL -5 ? A VAL 14 15 1 Y 1 A PRO -4 ? A PRO 15 16 1 Y 1 A ARG -3 ? A ARG 16 17 1 Y 1 A GLY -2 ? A GLY 17 18 1 Y 1 A SER -1 ? A SER 18 19 1 Y 1 A HIS 0 ? A HIS 19 20 1 Y 1 A MET 1 ? A MET 20 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 EDO C1 C N N 89 EDO O1 O N N 90 EDO C2 C N N 91 EDO O2 O N N 92 EDO H11 H N N 93 EDO H12 H N N 94 EDO HO1 H N N 95 EDO H21 H N N 96 EDO H22 H N N 97 EDO HO2 H N N 98 GLN N N N N 99 GLN CA C N S 100 GLN C C N N 101 GLN O O N N 102 GLN CB C N N 103 GLN CG C N N 104 GLN CD C N N 105 GLN OE1 O N N 106 GLN NE2 N N N 107 GLN OXT O N N 108 GLN H H N N 109 GLN H2 H N N 110 GLN HA H N N 111 GLN HB2 H N N 112 GLN HB3 H N N 113 GLN HG2 H N N 114 GLN HG3 H N N 115 GLN HE21 H N N 116 GLN HE22 H N N 117 GLN HXT H N N 118 GLU N N N N 119 GLU CA C N S 120 GLU C C N N 121 GLU O O N N 122 GLU CB C N N 123 GLU CG C N N 124 GLU CD C N N 125 GLU OE1 O N N 126 GLU OE2 O N N 127 GLU OXT O N N 128 GLU H H N N 129 GLU H2 H N N 130 GLU HA H N N 131 GLU HB2 H N N 132 GLU HB3 H N N 133 GLU HG2 H N N 134 GLU HG3 H N N 135 GLU HE2 H N N 136 GLU HXT H N N 137 GLY N N N N 138 GLY CA C N N 139 GLY C C N N 140 GLY O O N N 141 GLY OXT O N N 142 GLY H H N N 143 GLY H2 H N N 144 GLY HA2 H N N 145 GLY HA3 H N N 146 GLY HXT H N N 147 HIS N N N N 148 HIS CA C N S 149 HIS C C N N 150 HIS O O N N 151 HIS CB C N N 152 HIS CG C Y N 153 HIS ND1 N Y N 154 HIS CD2 C Y N 155 HIS CE1 C Y N 156 HIS NE2 N Y N 157 HIS OXT O N N 158 HIS H H N N 159 HIS H2 H N N 160 HIS HA H N N 161 HIS HB2 H N N 162 HIS HB3 H N N 163 HIS HD1 H N N 164 HIS HD2 H N N 165 HIS HE1 H N N 166 HIS HE2 H N N 167 HIS HXT H N N 168 HOH O O N N 169 HOH H1 H N N 170 HOH H2 H N N 171 ILE N N N N 172 ILE CA C N S 173 ILE C C N N 174 ILE O O N N 175 ILE CB C N S 176 ILE CG1 C N N 177 ILE CG2 C N N 178 ILE CD1 C N N 179 ILE OXT O N N 180 ILE H H N N 181 ILE H2 H N N 182 ILE HA H N N 183 ILE HB H N N 184 ILE HG12 H N N 185 ILE HG13 H N N 186 ILE HG21 H N N 187 ILE HG22 H N N 188 ILE HG23 H N N 189 ILE HD11 H N N 190 ILE HD12 H N N 191 ILE HD13 H N N 192 ILE HXT H N N 193 LEU N N N N 194 LEU CA C N S 195 LEU C C N N 196 LEU O O N N 197 LEU CB C N N 198 LEU CG C N N 199 LEU CD1 C N N 200 LEU CD2 C N N 201 LEU OXT O N N 202 LEU H H N N 203 LEU H2 H N N 204 LEU HA H N N 205 LEU HB2 H N N 206 LEU HB3 H N N 207 LEU HG H N N 208 LEU HD11 H N N 209 LEU HD12 H N N 210 LEU HD13 H N N 211 LEU HD21 H N N 212 LEU HD22 H N N 213 LEU HD23 H N N 214 LEU HXT H N N 215 LYS N N N N 216 LYS CA C N S 217 LYS C C N N 218 LYS O O N N 219 LYS CB C N N 220 LYS CG C N N 221 LYS CD C N N 222 LYS CE C N N 223 LYS NZ N N N 224 LYS OXT O N N 225 LYS H H N N 226 LYS H2 H N N 227 LYS HA H N N 228 LYS HB2 H N N 229 LYS HB3 H N N 230 LYS HG2 H N N 231 LYS HG3 H N N 232 LYS HD2 H N N 233 LYS HD3 H N N 234 LYS HE2 H N N 235 LYS HE3 H N N 236 LYS HZ1 H N N 237 LYS HZ2 H N N 238 LYS HZ3 H N N 239 LYS HXT H N N 240 MET N N N N 241 MET CA C N S 242 MET C C N N 243 MET O O N N 244 MET CB C N N 245 MET CG C N N 246 MET SD S N N 247 MET CE C N N 248 MET OXT O N N 249 MET H H N N 250 MET H2 H N N 251 MET HA H N N 252 MET HB2 H N N 253 MET HB3 H N N 254 MET HG2 H N N 255 MET HG3 H N N 256 MET HE1 H N N 257 MET HE2 H N N 258 MET HE3 H N N 259 MET HXT H N N 260 PHE N N N N 261 PHE CA C N S 262 PHE C C N N 263 PHE O O N N 264 PHE CB C N N 265 PHE CG C Y N 266 PHE CD1 C Y N 267 PHE CD2 C Y N 268 PHE CE1 C Y N 269 PHE CE2 C Y N 270 PHE CZ C Y N 271 PHE OXT O N N 272 PHE H H N N 273 PHE H2 H N N 274 PHE HA H N N 275 PHE HB2 H N N 276 PHE HB3 H N N 277 PHE HD1 H N N 278 PHE HD2 H N N 279 PHE HE1 H N N 280 PHE HE2 H N N 281 PHE HZ H N N 282 PHE HXT H N N 283 PRO N N N N 284 PRO CA C N S 285 PRO C C N N 286 PRO O O N N 287 PRO CB C N N 288 PRO CG C N N 289 PRO CD C N N 290 PRO OXT O N N 291 PRO H H N N 292 PRO HA H N N 293 PRO HB2 H N N 294 PRO HB3 H N N 295 PRO HG2 H N N 296 PRO HG3 H N N 297 PRO HD2 H N N 298 PRO HD3 H N N 299 PRO HXT H N N 300 SER N N N N 301 SER CA C N S 302 SER C C N N 303 SER O O N N 304 SER CB C N N 305 SER OG O N N 306 SER OXT O N N 307 SER H H N N 308 SER H2 H N N 309 SER HA H N N 310 SER HB2 H N N 311 SER HB3 H N N 312 SER HG H N N 313 SER HXT H N N 314 THR N N N N 315 THR CA C N S 316 THR C C N N 317 THR O O N N 318 THR CB C N R 319 THR OG1 O N N 320 THR CG2 C N N 321 THR OXT O N N 322 THR H H N N 323 THR H2 H N N 324 THR HA H N N 325 THR HB H N N 326 THR HG1 H N N 327 THR HG21 H N N 328 THR HG22 H N N 329 THR HG23 H N N 330 THR HXT H N N 331 TRP N N N N 332 TRP CA C N S 333 TRP C C N N 334 TRP O O N N 335 TRP CB C N N 336 TRP CG C Y N 337 TRP CD1 C Y N 338 TRP CD2 C Y N 339 TRP NE1 N Y N 340 TRP CE2 C Y N 341 TRP CE3 C Y N 342 TRP CZ2 C Y N 343 TRP CZ3 C Y N 344 TRP CH2 C Y N 345 TRP OXT O N N 346 TRP H H N N 347 TRP H2 H N N 348 TRP HA H N N 349 TRP HB2 H N N 350 TRP HB3 H N N 351 TRP HD1 H N N 352 TRP HE1 H N N 353 TRP HE3 H N N 354 TRP HZ2 H N N 355 TRP HZ3 H N N 356 TRP HH2 H N N 357 TRP HXT H N N 358 TYR N N N N 359 TYR CA C N S 360 TYR C C N N 361 TYR O O N N 362 TYR CB C N N 363 TYR CG C Y N 364 TYR CD1 C Y N 365 TYR CD2 C Y N 366 TYR CE1 C Y N 367 TYR CE2 C Y N 368 TYR CZ C Y N 369 TYR OH O N N 370 TYR OXT O N N 371 TYR H H N N 372 TYR H2 H N N 373 TYR HA H N N 374 TYR HB2 H N N 375 TYR HB3 H N N 376 TYR HD1 H N N 377 TYR HD2 H N N 378 TYR HE1 H N N 379 TYR HE2 H N N 380 TYR HH H N N 381 TYR HXT H N N 382 VAL N N N N 383 VAL CA C N S 384 VAL C C N N 385 VAL O O N N 386 VAL CB C N N 387 VAL CG1 C N N 388 VAL CG2 C N N 389 VAL OXT O N N 390 VAL H H N N 391 VAL H2 H N N 392 VAL HA H N N 393 VAL HB H N N 394 VAL HG11 H N N 395 VAL HG12 H N N 396 VAL HG13 H N N 397 VAL HG21 H N N 398 VAL HG22 H N N 399 VAL HG23 H N N 400 VAL HXT H N N 401 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 PHE N CA sing N N 246 PHE N H sing N N 247 PHE N H2 sing N N 248 PHE CA C sing N N 249 PHE CA CB sing N N 250 PHE CA HA sing N N 251 PHE C O doub N N 252 PHE C OXT sing N N 253 PHE CB CG sing N N 254 PHE CB HB2 sing N N 255 PHE CB HB3 sing N N 256 PHE CG CD1 doub Y N 257 PHE CG CD2 sing Y N 258 PHE CD1 CE1 sing Y N 259 PHE CD1 HD1 sing N N 260 PHE CD2 CE2 doub Y N 261 PHE CD2 HD2 sing N N 262 PHE CE1 CZ doub Y N 263 PHE CE1 HE1 sing N N 264 PHE CE2 CZ sing Y N 265 PHE CE2 HE2 sing N N 266 PHE CZ HZ sing N N 267 PHE OXT HXT sing N N 268 PRO N CA sing N N 269 PRO N CD sing N N 270 PRO N H sing N N 271 PRO CA C sing N N 272 PRO CA CB sing N N 273 PRO CA HA sing N N 274 PRO C O doub N N 275 PRO C OXT sing N N 276 PRO CB CG sing N N 277 PRO CB HB2 sing N N 278 PRO CB HB3 sing N N 279 PRO CG CD sing N N 280 PRO CG HG2 sing N N 281 PRO CG HG3 sing N N 282 PRO CD HD2 sing N N 283 PRO CD HD3 sing N N 284 PRO OXT HXT sing N N 285 SER N CA sing N N 286 SER N H sing N N 287 SER N H2 sing N N 288 SER CA C sing N N 289 SER CA CB sing N N 290 SER CA HA sing N N 291 SER C O doub N N 292 SER C OXT sing N N 293 SER CB OG sing N N 294 SER CB HB2 sing N N 295 SER CB HB3 sing N N 296 SER OG HG sing N N 297 SER OXT HXT sing N N 298 THR N CA sing N N 299 THR N H sing N N 300 THR N H2 sing N N 301 THR CA C sing N N 302 THR CA CB sing N N 303 THR CA HA sing N N 304 THR C O doub N N 305 THR C OXT sing N N 306 THR CB OG1 sing N N 307 THR CB CG2 sing N N 308 THR CB HB sing N N 309 THR OG1 HG1 sing N N 310 THR CG2 HG21 sing N N 311 THR CG2 HG22 sing N N 312 THR CG2 HG23 sing N N 313 THR OXT HXT sing N N 314 TRP N CA sing N N 315 TRP N H sing N N 316 TRP N H2 sing N N 317 TRP CA C sing N N 318 TRP CA CB sing N N 319 TRP CA HA sing N N 320 TRP C O doub N N 321 TRP C OXT sing N N 322 TRP CB CG sing N N 323 TRP CB HB2 sing N N 324 TRP CB HB3 sing N N 325 TRP CG CD1 doub Y N 326 TRP CG CD2 sing Y N 327 TRP CD1 NE1 sing Y N 328 TRP CD1 HD1 sing N N 329 TRP CD2 CE2 doub Y N 330 TRP CD2 CE3 sing Y N 331 TRP NE1 CE2 sing Y N 332 TRP NE1 HE1 sing N N 333 TRP CE2 CZ2 sing Y N 334 TRP CE3 CZ3 doub Y N 335 TRP CE3 HE3 sing N N 336 TRP CZ2 CH2 doub Y N 337 TRP CZ2 HZ2 sing N N 338 TRP CZ3 CH2 sing Y N 339 TRP CZ3 HZ3 sing N N 340 TRP CH2 HH2 sing N N 341 TRP OXT HXT sing N N 342 TYR N CA sing N N 343 TYR N H sing N N 344 TYR N H2 sing N N 345 TYR CA C sing N N 346 TYR CA CB sing N N 347 TYR CA HA sing N N 348 TYR C O doub N N 349 TYR C OXT sing N N 350 TYR CB CG sing N N 351 TYR CB HB2 sing N N 352 TYR CB HB3 sing N N 353 TYR CG CD1 doub Y N 354 TYR CG CD2 sing Y N 355 TYR CD1 CE1 sing Y N 356 TYR CD1 HD1 sing N N 357 TYR CD2 CE2 doub Y N 358 TYR CD2 HD2 sing N N 359 TYR CE1 CZ doub Y N 360 TYR CE1 HE1 sing N N 361 TYR CE2 CZ sing Y N 362 TYR CE2 HE2 sing N N 363 TYR CZ OH sing N N 364 TYR OH HH sing N N 365 TYR OXT HXT sing N N 366 VAL N CA sing N N 367 VAL N H sing N N 368 VAL N H2 sing N N 369 VAL CA C sing N N 370 VAL CA CB sing N N 371 VAL CA HA sing N N 372 VAL C O doub N N 373 VAL C OXT sing N N 374 VAL CB CG1 sing N N 375 VAL CB CG2 sing N N 376 VAL CB HB sing N N 377 VAL CG1 HG11 sing N N 378 VAL CG1 HG12 sing N N 379 VAL CG1 HG13 sing N N 380 VAL CG2 HG21 sing N N 381 VAL CG2 HG22 sing N N 382 VAL CG2 HG23 sing N N 383 VAL OXT HXT sing N N 384 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 1,2-ETHANEDIOL EDO 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2PTH _pdbx_initial_refinement_model.details 'PDB ENTRY 2PTH' #