HEADER LIGASE 09-JUN-10 3NEM TITLE ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH ASPARTYL ADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASPARTATE--TRNA LIGASE, ASPRS; COMPND 5 EC: 6.1.1.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_COMMON: THERMOCOCCUS KODAKARAENSIS; SOURCE 4 ORGANISM_TAXID: 311400; SOURCE 5 GENE: ASPS, TK0492; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM101TR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PUC18 KEYWDS ROSSMANN FOLD, OB FOLD, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR E.SCHMITT,D.MORAS,L.MOULINIER REVDAT 2 06-SEP-23 3NEM 1 REMARK LINK REVDAT 1 04-AUG-10 3NEM 0 JRNL AUTH E.SCHMITT,L.MOULINIER,S.FUJIWARA,T.IMANAKA,J.C.THIERRY, JRNL AUTH 2 D.MORAS JRNL TITL CRYSTAL STRUCTURE OF ASPARTYL-TRNA SYNTHETASE FROM JRNL TITL 2 PYROCOCCUS KODAKARAENSIS KOD: ARCHAEON SPECIFICITY AND JRNL TITL 3 CATALYTIC MECHANISM OF ADENYLATE FORMATION JRNL REF EMBO J. V. 17 5227 1998 JRNL REFN ISSN 0261-4189 JRNL PMID 9724658 JRNL DOI 10.1093/EMBOJ/17.17.5227 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NEM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-97 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : DW32 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103073 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 28.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ASZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG AND ETHYLENE GLYCOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 61.61000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.61000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 30 O HOH B 2081 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 104 C - N - CA ANGL. DEV. = -9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 181 -120.95 53.65 REMARK 500 ASP A 204 -46.13 69.87 REMARK 500 LYS A 346 70.12 -157.84 REMARK 500 LEU B 31 40.63 -109.83 REMARK 500 ALA B 166 37.14 -141.09 REMARK 500 PHE B 181 -114.57 51.88 REMARK 500 SER B 190 146.61 -174.79 REMARK 500 ASP B 204 -45.77 69.14 REMARK 500 LEU B 278 -162.54 -70.58 REMARK 500 PRO B 279 108.63 5.94 REMARK 500 LYS B 346 73.18 -152.79 REMARK 500 ARG B 351 47.89 -91.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 103 PRO B 104 149.65 REMARK 500 LEU B 278 PRO B 279 -120.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1041 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 361 OE2 REMARK 620 2 ATP B1039 O1G 98.5 REMARK 620 3 ATP B1039 O1B 99.8 87.8 REMARK 620 4 HOH B2252 O 163.4 94.1 91.4 REMARK 620 5 HOH B2253 O 79.5 176.1 89.2 88.5 REMARK 620 6 HOH B2340 O 72.9 93.1 172.6 95.8 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1042 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 361 OE1 REMARK 620 2 ATP B1039 O1B 95.4 REMARK 620 3 ATP B1039 O1A 95.6 84.0 REMARK 620 4 HOH B2253 O 97.9 94.1 166.5 REMARK 620 5 HOH B2311 O 173.9 90.7 84.6 82.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1040 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B1039 O2B REMARK 620 2 ATP B1039 O2G 86.6 REMARK 620 3 HOH B2248 O 175.6 93.8 REMARK 620 4 HOH B2249 O 91.3 77.5 93.1 REMARK 620 5 HOH B2250 O 84.5 170.9 94.9 104.8 REMARK 620 6 HOH B2251 O 92.2 92.3 83.4 168.9 86.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMO A 439 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 1039 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1040 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1041 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1042 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B8A RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH ATP-MN REMARK 900 RELATED ID: 3NEL RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH ASPARTIC ACID REMARK 900 RELATED ID: 3NEN RELATED DB: PDB REMARK 900 SAME PROTEIN UNLIGANDED DBREF 3NEM A 1 438 UNP Q52428 SYD_PYRKO 1 438 DBREF 3NEM B 1 438 UNP Q52428 SYD_PYRKO 1 438 SEQRES 1 A 438 MET TYR ARG THR HIS TYR SER SER GLU ILE THR GLU GLU SEQRES 2 A 438 LEU ASN GLY GLN LYS VAL LYS VAL ALA GLY TRP VAL TRP SEQRES 3 A 438 GLU VAL LYS ASP LEU GLY GLY ILE LYS PHE LEU TRP ILE SEQRES 4 A 438 ARG ASP ARG ASP GLY ILE VAL GLN ILE THR ALA PRO LYS SEQRES 5 A 438 LYS LYS VAL ASP PRO GLU LEU PHE LYS LEU ILE PRO LYS SEQRES 6 A 438 LEU ARG SER GLU ASP VAL VAL ALA VAL GLU GLY VAL VAL SEQRES 7 A 438 ASN PHE THR PRO LYS ALA LYS LEU GLY PHE GLU ILE LEU SEQRES 8 A 438 PRO GLU LYS ILE VAL VAL LEU ASN ARG ALA GLU THR PRO SEQRES 9 A 438 LEU PRO LEU ASP PRO THR GLY LYS VAL LYS ALA GLU LEU SEQRES 10 A 438 ASP THR ARG LEU ASP ASN ARG PHE MET ASP LEU ARG ARG SEQRES 11 A 438 PRO GLU VAL MET ALA ILE PHE LYS ILE ARG SER SER VAL SEQRES 12 A 438 PHE LYS ALA VAL ARG ASP PHE PHE HIS GLU ASN GLY PHE SEQRES 13 A 438 ILE GLU ILE HIS THR PRO LYS ILE ILE ALA THR ALA THR SEQRES 14 A 438 GLU GLY GLY THR GLU LEU PHE PRO MET LYS TYR PHE GLU SEQRES 15 A 438 GLU ASP ALA PHE LEU ALA GLN SER PRO GLN LEU TYR LYS SEQRES 16 A 438 GLN ILE MET MET ALA SER GLY LEU ASP ARG VAL TYR GLU SEQRES 17 A 438 ILE ALA PRO ILE PHE ARG ALA GLU GLU HIS ASN THR THR SEQRES 18 A 438 ARG HIS LEU ASN GLU ALA TRP SER ILE ASP SER GLU MET SEQRES 19 A 438 ALA PHE ILE GLU ASP GLU GLU GLU VAL MET SER PHE LEU SEQRES 20 A 438 GLU ARG LEU VAL ALA HIS ALA ILE ASN TYR VAL ARG GLU SEQRES 21 A 438 HIS ASN ALA LYS GLU LEU ASP ILE LEU ASN PHE GLU LEU SEQRES 22 A 438 GLU GLU PRO LYS LEU PRO PHE PRO ARG VAL SER TYR ASP SEQRES 23 A 438 LYS ALA LEU GLU ILE LEU GLY ASP LEU GLY LYS GLU ILE SEQRES 24 A 438 PRO TRP GLY GLU ASP ILE ASP THR GLU GLY GLU ARG LEU SEQRES 25 A 438 LEU GLY LYS TYR MET MET GLU ASN GLU ASN ALA PRO LEU SEQRES 26 A 438 TYR PHE LEU TYR GLN TYR PRO SER GLU ALA LYS PRO PHE SEQRES 27 A 438 TYR ILE MET LYS TYR ASP ASN LYS PRO GLU ILE CYS ARG SEQRES 28 A 438 ALA PHE ASP LEU GLU TYR ARG GLY VAL GLU ILE SER SER SEQRES 29 A 438 GLY GLY GLN ARG GLU HIS ARG HIS ASP ILE LEU VAL GLU SEQRES 30 A 438 GLN ILE LYS GLU LYS GLY LEU ASN PRO GLU SER PHE GLU SEQRES 31 A 438 PHE TYR LEU LYS ALA PHE ARG TYR GLY MET PRO PRO HIS SEQRES 32 A 438 GLY GLY PHE GLY LEU GLY ALA GLU ARG LEU ILE LYS GLN SEQRES 33 A 438 MET LEU ASP LEU PRO ASN ILE ARG GLU VAL ILE LEU PHE SEQRES 34 A 438 PRO ARG ASP ARG ARG ARG LEU THR PRO SEQRES 1 B 438 MET TYR ARG THR HIS TYR SER SER GLU ILE THR GLU GLU SEQRES 2 B 438 LEU ASN GLY GLN LYS VAL LYS VAL ALA GLY TRP VAL TRP SEQRES 3 B 438 GLU VAL LYS ASP LEU GLY GLY ILE LYS PHE LEU TRP ILE SEQRES 4 B 438 ARG ASP ARG ASP GLY ILE VAL GLN ILE THR ALA PRO LYS SEQRES 5 B 438 LYS LYS VAL ASP PRO GLU LEU PHE LYS LEU ILE PRO LYS SEQRES 6 B 438 LEU ARG SER GLU ASP VAL VAL ALA VAL GLU GLY VAL VAL SEQRES 7 B 438 ASN PHE THR PRO LYS ALA LYS LEU GLY PHE GLU ILE LEU SEQRES 8 B 438 PRO GLU LYS ILE VAL VAL LEU ASN ARG ALA GLU THR PRO SEQRES 9 B 438 LEU PRO LEU ASP PRO THR GLY LYS VAL LYS ALA GLU LEU SEQRES 10 B 438 ASP THR ARG LEU ASP ASN ARG PHE MET ASP LEU ARG ARG SEQRES 11 B 438 PRO GLU VAL MET ALA ILE PHE LYS ILE ARG SER SER VAL SEQRES 12 B 438 PHE LYS ALA VAL ARG ASP PHE PHE HIS GLU ASN GLY PHE SEQRES 13 B 438 ILE GLU ILE HIS THR PRO LYS ILE ILE ALA THR ALA THR SEQRES 14 B 438 GLU GLY GLY THR GLU LEU PHE PRO MET LYS TYR PHE GLU SEQRES 15 B 438 GLU ASP ALA PHE LEU ALA GLN SER PRO GLN LEU TYR LYS SEQRES 16 B 438 GLN ILE MET MET ALA SER GLY LEU ASP ARG VAL TYR GLU SEQRES 17 B 438 ILE ALA PRO ILE PHE ARG ALA GLU GLU HIS ASN THR THR SEQRES 18 B 438 ARG HIS LEU ASN GLU ALA TRP SER ILE ASP SER GLU MET SEQRES 19 B 438 ALA PHE ILE GLU ASP GLU GLU GLU VAL MET SER PHE LEU SEQRES 20 B 438 GLU ARG LEU VAL ALA HIS ALA ILE ASN TYR VAL ARG GLU SEQRES 21 B 438 HIS ASN ALA LYS GLU LEU ASP ILE LEU ASN PHE GLU LEU SEQRES 22 B 438 GLU GLU PRO LYS LEU PRO PHE PRO ARG VAL SER TYR ASP SEQRES 23 B 438 LYS ALA LEU GLU ILE LEU GLY ASP LEU GLY LYS GLU ILE SEQRES 24 B 438 PRO TRP GLY GLU ASP ILE ASP THR GLU GLY GLU ARG LEU SEQRES 25 B 438 LEU GLY LYS TYR MET MET GLU ASN GLU ASN ALA PRO LEU SEQRES 26 B 438 TYR PHE LEU TYR GLN TYR PRO SER GLU ALA LYS PRO PHE SEQRES 27 B 438 TYR ILE MET LYS TYR ASP ASN LYS PRO GLU ILE CYS ARG SEQRES 28 B 438 ALA PHE ASP LEU GLU TYR ARG GLY VAL GLU ILE SER SER SEQRES 29 B 438 GLY GLY GLN ARG GLU HIS ARG HIS ASP ILE LEU VAL GLU SEQRES 30 B 438 GLN ILE LYS GLU LYS GLY LEU ASN PRO GLU SER PHE GLU SEQRES 31 B 438 PHE TYR LEU LYS ALA PHE ARG TYR GLY MET PRO PRO HIS SEQRES 32 B 438 GLY GLY PHE GLY LEU GLY ALA GLU ARG LEU ILE LYS GLN SEQRES 33 B 438 MET LEU ASP LEU PRO ASN ILE ARG GLU VAL ILE LEU PHE SEQRES 34 B 438 PRO ARG ASP ARG ARG ARG LEU THR PRO HET AMO A 439 31 HET ATP B1039 31 HET MG B1040 1 HET MG B1041 1 HET MG B1042 1 HETNAM AMO ASPARTYL-ADENOSINE-5'-MONOPHOSPHATE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 AMO C14 H19 N6 O10 P FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 MG 3(MG 2+) FORMUL 8 HOH *473(H2 O) HELIX 1 1 TYR A 6 ILE A 10 5 5 HELIX 2 2 THR A 11 ASN A 15 5 5 HELIX 3 3 ASP A 56 ILE A 63 1 8 HELIX 4 4 PRO A 64 LEU A 66 5 3 HELIX 5 5 GLU A 116 ASN A 123 1 8 HELIX 6 6 ASN A 123 LEU A 128 1 6 HELIX 7 7 ARG A 130 ASN A 154 1 25 HELIX 8 8 PRO A 191 MET A 198 1 8 HELIX 9 9 MET A 199 SER A 201 5 3 HELIX 10 10 ASP A 239 ASN A 262 1 24 HELIX 11 11 ASN A 262 LEU A 269 1 8 HELIX 12 12 TYR A 285 LEU A 295 1 11 HELIX 13 13 ASP A 306 ASN A 322 1 17 HELIX 14 14 PRO A 332 LYS A 336 5 5 HELIX 15 15 ARG A 371 LYS A 382 1 12 HELIX 16 16 ASN A 385 SER A 388 5 4 HELIX 17 17 PHE A 389 ALA A 395 1 7 HELIX 18 18 ALA A 410 LEU A 418 1 9 HELIX 19 19 ASN A 422 ILE A 427 5 6 HELIX 20 20 TYR B 6 ILE B 10 5 5 HELIX 21 21 THR B 11 ASN B 15 5 5 HELIX 22 22 LYS B 53 VAL B 55 5 3 HELIX 23 23 ASP B 56 ILE B 63 1 8 HELIX 24 24 PRO B 64 LEU B 66 5 3 HELIX 25 25 GLU B 116 ASN B 123 1 8 HELIX 26 26 ASN B 123 LEU B 128 1 6 HELIX 27 27 ARG B 130 ASN B 154 1 25 HELIX 28 28 PRO B 191 MET B 198 1 8 HELIX 29 29 MET B 199 SER B 201 5 3 HELIX 30 30 ASP B 239 ASN B 262 1 24 HELIX 31 31 ASN B 262 LEU B 269 1 8 HELIX 32 32 TYR B 285 LEU B 295 1 11 HELIX 33 33 ASP B 306 ASN B 322 1 17 HELIX 34 34 PRO B 332 LYS B 336 5 5 HELIX 35 35 ARG B 371 LYS B 382 1 12 HELIX 36 36 ASN B 385 SER B 388 5 4 HELIX 37 37 PHE B 389 LYS B 394 1 6 HELIX 38 38 ALA B 395 ARG B 397 5 3 HELIX 39 39 ALA B 410 LEU B 418 1 9 HELIX 40 40 ASN B 422 ILE B 427 5 6 SHEET 1 A 6 LYS A 18 LEU A 31 0 SHEET 2 A 6 ILE A 34 ASP A 41 -1 O TRP A 38 N TRP A 26 SHEET 3 A 6 GLY A 44 PRO A 51 -1 O ILE A 48 N LEU A 37 SHEET 4 A 6 PHE A 88 ASN A 99 1 O ILE A 90 N GLN A 47 SHEET 5 A 6 VAL A 71 PHE A 80 -1 N GLU A 75 O GLU A 93 SHEET 6 A 6 LYS A 18 LEU A 31 -1 N VAL A 21 O VAL A 74 SHEET 1 B 8 ILE A 157 GLU A 158 0 SHEET 2 B 8 ARG A 205 PHE A 213 1 O ARG A 205 N ILE A 157 SHEET 3 B 8 GLU A 226 ALA A 235 -1 O ASP A 231 N GLU A 208 SHEET 4 B 8 HIS A 403 GLY A 409 -1 O LEU A 408 N ILE A 230 SHEET 5 B 8 VAL A 360 GLN A 367 -1 N SER A 364 O GLY A 407 SHEET 6 B 8 ALA A 352 TYR A 357 -1 N LEU A 355 O ILE A 362 SHEET 7 B 8 LEU A 325 TYR A 329 -1 N TYR A 326 O GLU A 356 SHEET 8 B 8 ARG A 282 SER A 284 1 N VAL A 283 O PHE A 327 SHEET 1 C 3 ILE A 164 ILE A 165 0 SHEET 2 C 3 GLU A 183 LEU A 187 -1 O PHE A 186 N ILE A 165 SHEET 3 C 3 PRO A 177 TYR A 180 -1 N TYR A 180 O GLU A 183 SHEET 1 D 6 LYS B 18 ASP B 30 0 SHEET 2 D 6 ILE B 34 ASP B 41 -1 O ARG B 40 N TRP B 24 SHEET 3 D 6 GLY B 44 PRO B 51 -1 O GLY B 44 N ASP B 41 SHEET 4 D 6 PHE B 88 ASN B 99 1 O ILE B 90 N GLN B 47 SHEET 5 D 6 VAL B 71 PHE B 80 -1 N GLU B 75 O GLU B 93 SHEET 6 D 6 LYS B 18 ASP B 30 -1 N VAL B 21 O VAL B 74 SHEET 1 E 8 ILE B 157 GLU B 158 0 SHEET 2 E 8 ARG B 205 PHE B 213 1 O ARG B 205 N ILE B 157 SHEET 3 E 8 GLU B 226 ALA B 235 -1 O ASP B 231 N GLU B 208 SHEET 4 E 8 HIS B 403 GLY B 409 -1 O LEU B 408 N ILE B 230 SHEET 5 E 8 VAL B 360 GLN B 367 -1 N SER B 364 O GLY B 407 SHEET 6 E 8 ALA B 352 TYR B 357 -1 N LEU B 355 O ILE B 362 SHEET 7 E 8 LEU B 325 TYR B 329 -1 N TYR B 326 O GLU B 356 SHEET 8 E 8 ARG B 282 SER B 284 1 N VAL B 283 O PHE B 327 SHEET 1 F 3 ILE B 164 ILE B 165 0 SHEET 2 F 3 GLU B 183 LEU B 187 -1 O PHE B 186 N ILE B 165 SHEET 3 F 3 PRO B 177 TYR B 180 -1 N TYR B 180 O GLU B 183 SHEET 1 G 2 LYS B 342 TYR B 343 0 SHEET 2 G 2 LYS B 346 CYS B 350 -1 O ILE B 349 N TYR B 343 LINK OE2 GLU B 361 MG MG B1041 1555 1555 2.27 LINK OE1 GLU B 361 MG MG B1042 1555 1555 2.29 LINK O2B ATP B1039 MG MG B1040 1555 1555 2.26 LINK O2G ATP B1039 MG MG B1040 1555 1555 2.27 LINK O1G ATP B1039 MG MG B1041 1555 1555 2.34 LINK O1B ATP B1039 MG MG B1041 1555 1555 2.36 LINK O1B ATP B1039 MG MG B1042 1555 1555 2.23 LINK O1A ATP B1039 MG MG B1042 1555 1555 2.28 LINK MG MG B1040 O HOH B2248 1555 1555 2.28 LINK MG MG B1040 O HOH B2249 1555 1555 2.41 LINK MG MG B1040 O HOH B2250 1555 1555 2.31 LINK MG MG B1040 O HOH B2251 1555 1555 2.37 LINK MG MG B1041 O HOH B2252 1555 1555 2.40 LINK MG MG B1041 O HOH B2253 1555 1555 2.39 LINK MG MG B1041 O HOH B2340 1555 1555 2.62 LINK MG MG B1042 O HOH B2253 1555 1555 2.33 LINK MG MG B1042 O HOH B2311 1555 1555 2.47 CISPEP 1 THR A 103 PRO A 104 0 -3.59 CISPEP 2 LEU A 278 PRO A 279 0 -1.52 CISPEP 3 THR A 437 PRO A 438 0 2.21 CISPEP 4 THR B 437 PRO B 438 0 -0.90 SITE 1 AC1 21 GLU A 170 GLN A 192 LYS A 195 ARG A 214 SITE 2 AC1 21 GLU A 216 HIS A 223 LEU A 224 TYR A 339 SITE 3 AC1 21 GLU A 361 ILE A 362 SER A 363 SER A 364 SITE 4 AC1 21 GLY A 365 ARG A 368 PHE A 406 GLY A 407 SITE 5 AC1 21 GLY A 409 ARG A 412 HOH A2046 HOH A2063 SITE 6 AC1 21 HOH A2124 SITE 1 AC2 19 ARG B 214 GLU B 216 HIS B 223 LEU B 224 SITE 2 AC2 19 ALA B 227 GLU B 361 ILE B 362 SER B 363 SITE 3 AC2 19 SER B 364 GLY B 407 GLY B 409 ARG B 412 SITE 4 AC2 19 MG B1040 MG B1041 MG B1042 HOH B2029 SITE 5 AC2 19 HOH B2249 HOH B2250 HOH B2251 SITE 1 AC3 5 ATP B1039 HOH B2248 HOH B2249 HOH B2250 SITE 2 AC3 5 HOH B2251 SITE 1 AC4 6 GLU B 361 ATP B1039 MG B1042 HOH B2252 SITE 2 AC4 6 HOH B2253 HOH B2340 SITE 1 AC5 6 GLU B 361 SER B 364 ATP B1039 MG B1041 SITE 2 AC5 6 HOH B2253 HOH B2311 CRYST1 123.220 124.870 86.930 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008116 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011504 0.00000