HEADER OXIDOREDUCTASE 09-JUN-10 3NF4 TITLE CRYSTAL STRUCTURE OF ACYL-COA DEHYDROGENASE FROM MYCOBACTERIUM TITLE 2 THERMORESISTIBILE BOUND TO FLAVIN ADENINE DINUCLEOTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM THERMORESISTIBILE; SOURCE 3 ORGANISM_TAXID: 1797; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 2 FAD, FADH, TUBERCULOSIS, ACYL-COA, DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 06-SEP-23 3NF4 1 REMARK REVDAT 2 22-APR-15 3NF4 1 JRNL VERSN REVDAT 1 23-JUN-10 3NF4 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 33892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1697 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2286 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5447 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.08000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 3.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.159 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5603 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7616 ; 1.453 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 729 ; 5.445 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 227 ;34.436 ;23.260 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 850 ;16.414 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;16.537 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 863 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4257 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3631 ; 0.639 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5730 ; 1.219 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1972 ; 2.047 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1886 ; 3.324 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 175 6 REMARK 3 1 B 1 B 175 6 REMARK 3 2 A 185 A 370 6 REMARK 3 2 B 185 B 370 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2492 ; 0.350 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 2492 ; 3.150 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 44.8952 48.4781 73.6284 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.0832 REMARK 3 T33: 0.3082 T12: 0.0004 REMARK 3 T13: 0.0573 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.9063 L22: 0.4230 REMARK 3 L33: 0.0962 L12: 0.1205 REMARK 3 L13: -0.1349 L23: -0.1871 REMARK 3 S TENSOR REMARK 3 S11: -0.0659 S12: -0.0219 S13: -0.3826 REMARK 3 S21: 0.2026 S22: -0.0344 S23: -0.0752 REMARK 3 S31: -0.0903 S32: 0.0106 S33: 0.1003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5589 76.6943 57.0550 REMARK 3 T TENSOR REMARK 3 T11: 0.1351 T22: 0.2334 REMARK 3 T33: 0.1755 T12: 0.0017 REMARK 3 T13: 0.0387 T23: -0.0794 REMARK 3 L TENSOR REMARK 3 L11: 0.8039 L22: 0.0533 REMARK 3 L33: 0.4538 L12: -0.0276 REMARK 3 L13: 0.2049 L23: -0.1182 REMARK 3 S TENSOR REMARK 3 S11: -0.0350 S12: 0.1919 S13: -0.0435 REMARK 3 S21: 0.0622 S22: 0.0030 S23: 0.0109 REMARK 3 S31: -0.0375 S32: -0.0019 S33: 0.0320 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3NF4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33958 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 0.33900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 2DVL MOLECULE A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 69.7 MG/ML PROTEIN AGAINST PACT SCREEN REMARK 280 CONDITION E11, 0.2 M NA CITRATE, 20% PEG 3350 WITH 20% ETHYLENE REMARK 280 GLYCOL AS CRYO-PROTECTANT, CRYSTAL TRACKING ID 215726E11, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K, PH 5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.82500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.74500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.74500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.82500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.82500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.61500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 85.74500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.61500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.82500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.74500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TETRAMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 95.65000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 148.84500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 HIS A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 180 REMARK 465 GLY A 181 REMARK 465 ARG A 272 REMARK 465 THR A 273 REMARK 465 ALA A 274 REMARK 465 PHE A 275 REMARK 465 GLY A 276 REMARK 465 ARG A 277 REMARK 465 GLN A 283 REMARK 465 ARG A 383 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 HIS B 3 REMARK 465 PRO B 4 REMARK 465 GLN B 135 REMARK 465 ALA B 136 REMARK 465 GLY B 137 REMARK 465 SER B 138 REMARK 465 ASP B 139 REMARK 465 ALA B 140 REMARK 465 ALA B 141 REMARK 465 ALA B 142 REMARK 465 LEU B 143 REMARK 465 GLY B 179 REMARK 465 GLU B 180 REMARK 465 ARG B 383 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 5 CG SD CE REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 GLU A 50 CG CD OE1 OE2 REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 ASP A 151 CG OD1 OD2 REMARK 470 ARG A 183 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 226 CG OD1 OD2 REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 GLU A 271 CG CD OE1 OE2 REMARK 470 ASP A 281 CG OD1 OD2 REMARK 470 HIS A 282 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 350 CG OD1 OD2 REMARK 470 MET B 5 CG SD CE REMARK 470 GLN B 14 CG CD OE1 NE2 REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 GLU B 21 CG CD OE1 OE2 REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 ARG B 144 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 177 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 PHE B 217 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 224 CG OD1 OD2 REMARK 470 GLU B 271 CG CD OE1 OE2 REMARK 470 ARG B 379 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 24.35 -151.60 REMARK 500 LEU A 131 -47.58 -131.37 REMARK 500 ALA A 136 92.71 -164.26 REMARK 500 ARG A 144 -5.45 -140.64 REMARK 500 LYS A 168 -0.96 -141.20 REMARK 500 ARG A 183 41.67 -89.36 REMARK 500 TYR A 316 16.61 -146.31 REMARK 500 SER B 59 39.06 -144.73 REMARK 500 LEU B 131 -40.51 -134.44 REMARK 500 ARG B 183 54.53 -93.62 REMARK 500 TYR B 316 12.53 -150.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 384 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 124 OE1 REMARK 620 2 GLU B 124 OE2 45.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 384 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYTHA.00185.A RELATED DB: TARGETDB DBREF 3NF4 A -3 383 PDB 3NF4 3NF4 -3 383 DBREF 3NF4 B -3 383 PDB 3NF4 3NF4 -3 383 SEQRES 1 A 387 GLY PRO GLY SER MET ILE HIS PRO MET ALA VAL ASP ARG SEQRES 2 A 387 LEU LEU PRO SER GLN GLU ALA ALA GLU LEU ILE GLU LEU SEQRES 3 A 387 THR ARG GLU ILE ALA ASP LYS VAL LEU ASP PRO ILE VAL SEQRES 4 A 387 ASP ARG HIS GLU LYS ASP GLU THR TYR PRO GLU GLY VAL SEQRES 5 A 387 PHE GLU GLN LEU GLY ALA ALA GLY LEU LEU SER LEU PRO SEQRES 6 A 387 GLN PRO GLU GLU TRP GLY GLY GLY GLY GLN PRO TYR GLU SEQRES 7 A 387 VAL TYR LEU GLN VAL LEU GLU GLU ILE ALA ALA ARG TRP SEQRES 8 A 387 ALA SER VAL ALA VAL ALA VAL SER VAL HIS SER LEU SER SEQRES 9 A 387 SER HIS PRO LEU LEU VAL PHE GLY THR GLU GLU GLN LYS SEQRES 10 A 387 LYS ARG TRP LEU PRO GLY MET LEU SER GLY GLU GLN ILE SEQRES 11 A 387 GLY ALA TYR SER LEU SER GLU PRO GLN ALA GLY SER ASP SEQRES 12 A 387 ALA ALA ALA LEU ARG CYS ALA ALA THR PRO THR ASP GLY SEQRES 13 A 387 GLY TYR VAL ILE ASN GLY SER LYS SER TRP ILE THR HIS SEQRES 14 A 387 GLY GLY LYS ALA ASP PHE TYR THR LEU PHE ALA ARG THR SEQRES 15 A 387 GLY GLU GLY SER ARG GLY VAL SER CYS PHE LEU VAL PRO SEQRES 16 A 387 ALA ASP GLN PRO GLY LEU SER PHE GLY LYS PRO GLU GLU SEQRES 17 A 387 LYS MET GLY LEU HIS ALA VAL PRO THR THR SER ALA PHE SEQRES 18 A 387 TYR ASP ASN ALA ARG ILE ASP ALA ASP ARG ARG ILE GLY SEQRES 19 A 387 GLU GLU GLY GLN GLY LEU GLN ILE ALA PHE SER ALA LEU SEQRES 20 A 387 ASP SER GLY ARG LEU GLY ILE ALA ALA VAL ALA THR GLY SEQRES 21 A 387 LEU ALA GLN ALA ALA LEU ASP GLU ALA VAL ALA TYR ALA SEQRES 22 A 387 ASN GLU ARG THR ALA PHE GLY ARG LYS ILE ILE ASP HIS SEQRES 23 A 387 GLN GLY LEU GLY PHE LEU LEU ALA ASP MET ALA ALA ALA SEQRES 24 A 387 VAL ALA THR ALA ARG ALA THR TYR LEU ASP ALA ALA ARG SEQRES 25 A 387 ARG ARG ASP GLN GLY ARG PRO TYR SER GLN GLN ALA SER SEQRES 26 A 387 ILE ALA LYS LEU THR ALA THR ASP ALA ALA MET LYS VAL SEQRES 27 A 387 THR THR ASP ALA VAL GLN VAL PHE GLY GLY VAL GLY TYR SEQRES 28 A 387 THR ARG ASP TYR ARG VAL GLU ARG TYR MET ARG GLU ALA SEQRES 29 A 387 LYS ILE MET GLN ILE PHE GLU GLY THR ASN GLN ILE GLN SEQRES 30 A 387 ARG LEU VAL ILE ALA ARG GLY LEU THR ARG SEQRES 1 B 387 GLY PRO GLY SER MET ILE HIS PRO MET ALA VAL ASP ARG SEQRES 2 B 387 LEU LEU PRO SER GLN GLU ALA ALA GLU LEU ILE GLU LEU SEQRES 3 B 387 THR ARG GLU ILE ALA ASP LYS VAL LEU ASP PRO ILE VAL SEQRES 4 B 387 ASP ARG HIS GLU LYS ASP GLU THR TYR PRO GLU GLY VAL SEQRES 5 B 387 PHE GLU GLN LEU GLY ALA ALA GLY LEU LEU SER LEU PRO SEQRES 6 B 387 GLN PRO GLU GLU TRP GLY GLY GLY GLY GLN PRO TYR GLU SEQRES 7 B 387 VAL TYR LEU GLN VAL LEU GLU GLU ILE ALA ALA ARG TRP SEQRES 8 B 387 ALA SER VAL ALA VAL ALA VAL SER VAL HIS SER LEU SER SEQRES 9 B 387 SER HIS PRO LEU LEU VAL PHE GLY THR GLU GLU GLN LYS SEQRES 10 B 387 LYS ARG TRP LEU PRO GLY MET LEU SER GLY GLU GLN ILE SEQRES 11 B 387 GLY ALA TYR SER LEU SER GLU PRO GLN ALA GLY SER ASP SEQRES 12 B 387 ALA ALA ALA LEU ARG CYS ALA ALA THR PRO THR ASP GLY SEQRES 13 B 387 GLY TYR VAL ILE ASN GLY SER LYS SER TRP ILE THR HIS SEQRES 14 B 387 GLY GLY LYS ALA ASP PHE TYR THR LEU PHE ALA ARG THR SEQRES 15 B 387 GLY GLU GLY SER ARG GLY VAL SER CYS PHE LEU VAL PRO SEQRES 16 B 387 ALA ASP GLN PRO GLY LEU SER PHE GLY LYS PRO GLU GLU SEQRES 17 B 387 LYS MET GLY LEU HIS ALA VAL PRO THR THR SER ALA PHE SEQRES 18 B 387 TYR ASP ASN ALA ARG ILE ASP ALA ASP ARG ARG ILE GLY SEQRES 19 B 387 GLU GLU GLY GLN GLY LEU GLN ILE ALA PHE SER ALA LEU SEQRES 20 B 387 ASP SER GLY ARG LEU GLY ILE ALA ALA VAL ALA THR GLY SEQRES 21 B 387 LEU ALA GLN ALA ALA LEU ASP GLU ALA VAL ALA TYR ALA SEQRES 22 B 387 ASN GLU ARG THR ALA PHE GLY ARG LYS ILE ILE ASP HIS SEQRES 23 B 387 GLN GLY LEU GLY PHE LEU LEU ALA ASP MET ALA ALA ALA SEQRES 24 B 387 VAL ALA THR ALA ARG ALA THR TYR LEU ASP ALA ALA ARG SEQRES 25 B 387 ARG ARG ASP GLN GLY ARG PRO TYR SER GLN GLN ALA SER SEQRES 26 B 387 ILE ALA LYS LEU THR ALA THR ASP ALA ALA MET LYS VAL SEQRES 27 B 387 THR THR ASP ALA VAL GLN VAL PHE GLY GLY VAL GLY TYR SEQRES 28 B 387 THR ARG ASP TYR ARG VAL GLU ARG TYR MET ARG GLU ALA SEQRES 29 B 387 LYS ILE MET GLN ILE PHE GLU GLY THR ASN GLN ILE GLN SEQRES 30 B 387 ARG LEU VAL ILE ALA ARG GLY LEU THR ARG HET FAD A 384 53 HET NA B 384 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NA SODIUM ION FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 NA NA 1+ FORMUL 5 HOH *169(H2 O) HELIX 1 1 SER A 13 LEU A 31 1 19 HELIX 2 2 ILE A 34 GLU A 42 1 9 HELIX 3 3 GLY A 47 ALA A 54 1 8 HELIX 4 4 PRO A 63 GLY A 67 5 5 HELIX 5 5 PRO A 72 ALA A 85 1 14 HELIX 6 6 TRP A 87 SER A 101 1 15 HELIX 7 7 SER A 101 GLY A 108 1 8 HELIX 8 8 THR A 109 LEU A 121 1 13 HELIX 9 9 ASP A 139 LEU A 143 5 5 HELIX 10 10 GLN A 234 ALA A 242 1 9 HELIX 11 11 ALA A 242 GLU A 271 1 30 HELIX 12 12 GLY A 284 GLN A 312 1 29 HELIX 13 13 TYR A 316 GLY A 343 1 28 HELIX 14 14 GLY A 344 THR A 348 5 5 HELIX 15 15 ARG A 352 GLN A 364 1 13 HELIX 16 16 THR A 369 GLY A 380 1 12 HELIX 17 17 SER B 13 LEU B 31 1 19 HELIX 18 18 ILE B 34 GLU B 42 1 9 HELIX 19 19 GLY B 47 ALA B 55 1 9 HELIX 20 20 PRO B 63 GLY B 67 5 5 HELIX 21 21 PRO B 72 ALA B 85 1 14 HELIX 22 22 TRP B 87 SER B 101 1 15 HELIX 23 23 SER B 101 GLY B 108 1 8 HELIX 24 24 THR B 109 LEU B 121 1 13 HELIX 25 25 GLN B 234 SER B 241 1 8 HELIX 26 26 ALA B 242 ASN B 270 1 29 HELIX 27 27 HIS B 282 GLN B 312 1 31 HELIX 28 28 TYR B 316 GLY B 343 1 28 HELIX 29 29 GLY B 344 THR B 348 5 5 HELIX 30 30 ARG B 352 GLN B 364 1 13 HELIX 31 31 THR B 369 GLY B 380 1 12 SHEET 1 A 4 GLY A 127 SER A 130 0 SHEET 2 A 4 PHE A 171 ARG A 177 1 O THR A 173 N SER A 130 SHEET 3 A 4 VAL A 185 PRO A 191 -1 O VAL A 190 N TYR A 172 SHEET 4 A 4 ARG A 228 ILE A 229 -1 O ILE A 229 N CYS A 187 SHEET 1 B 4 ALA A 146 THR A 150 0 SHEET 2 B 4 GLY A 153 THR A 164 -1 O VAL A 155 N THR A 148 SHEET 3 B 4 THR A 213 ASP A 224 -1 O TYR A 218 N GLY A 158 SHEET 4 B 4 LEU A 197 PHE A 199 -1 N SER A 198 O PHE A 217 SHEET 1 C 4 GLY B 127 SER B 130 0 SHEET 2 C 4 PHE B 171 ARG B 177 1 O THR B 173 N SER B 130 SHEET 3 C 4 VAL B 185 PRO B 191 -1 O PHE B 188 N LEU B 174 SHEET 4 C 4 ARG B 228 ILE B 229 -1 O ILE B 229 N CYS B 187 SHEET 1 D 4 ALA B 146 THR B 150 0 SHEET 2 D 4 GLY B 153 THR B 164 -1 O VAL B 155 N THR B 148 SHEET 3 D 4 THR B 213 ASP B 224 -1 O ILE B 223 N TYR B 154 SHEET 4 D 4 LEU B 197 PHE B 199 -1 N SER B 198 O PHE B 217 SHEET 1 E 2 THR B 273 ALA B 274 0 SHEET 2 E 2 ARG B 277 LYS B 278 -1 O ARG B 277 N ALA B 274 LINK OE1 GLU B 124 NA NA B 384 1555 1555 2.67 LINK OE2 GLU B 124 NA NA B 384 1555 1555 2.95 SITE 1 AC1 24 TYR A 129 LEU A 131 SER A 132 GLY A 137 SITE 2 AC1 24 SER A 138 TRP A 162 THR A 164 ILE A 362 SITE 3 AC1 24 ILE A 365 THR A 369 GLN A 371 ILE A 372 SITE 4 AC1 24 HOH A 393 HOH A 409 HOH A 419 HOH A 429 SITE 5 AC1 24 ARG B 272 PHE B 275 ILE B 279 GLN B 283 SITE 6 AC1 24 GLN B 340 VAL B 341 GLY B 344 HOH B 453 SITE 1 AC2 1 GLU B 124 CRYST1 95.650 99.230 171.490 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010455 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010078 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005831 0.00000