data_3NFK # _entry.id 3NFK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NFK pdb_00003nfk 10.2210/pdb3nfk/pdb RCSB RCSB059766 ? ? WWPDB D_1000059766 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-24 2 'Structure model' 1 1 2011-11-30 3 'Structure model' 1 2 2023-09-06 4 'Structure model' 1 3 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site 7 4 'Structure model' pdbx_entry_details 8 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NFK _pdbx_database_status.recvd_initial_deposition_date 2010-06-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2VPH 'Crystal structure of PTPN4-PDZ' unspecified PDB 2CS5 'Solution structure of PTPN4-PDZ' unspecified PDB 3NFL . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Babault, N.' 1 'Cordier, F.' 2 'Lafage, M.' 3 'Cockburn, J.' 4 'Haouz, A.' 5 'Rey, F.A.' 6 'Delepierre, M.' 7 'Buc, H.' 8 'Lafon, M.' 9 'Wolff, N.' 10 # _citation.id primary _citation.title 'Peptides Targeting the PDZ Domain of PTPN4 Are Efficient Inducers of Glioblastoma Cell Death.' _citation.journal_abbrev Structure _citation.journal_volume 19 _citation.page_first 1518 _citation.page_last 1524 _citation.year 2011 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22000519 _citation.pdbx_database_id_DOI 10.1016/j.str.2011.07.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Babault, N.' 1 ? primary 'Cordier, F.' 2 ? primary 'Lafage, M.' 3 ? primary 'Cockburn, J.' 4 ? primary 'Haouz, A.' 5 ? primary 'Prehaud, C.' 6 ? primary 'Rey, F.A.' 7 ? primary 'Delepierre, M.' 8 ? primary 'Buc, H.' 9 ? primary 'Lafon, M.' 10 ? primary 'Wolff, N.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tyrosine-protein phosphatase non-receptor type 4' 11694.363 2 ? ? 'PDZ domain (UNP residues 499-604)' ? 2 polymer syn 'Glycoprotein G' 1476.572 2 ? ? 'UNP residues 512-524' ? 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 water nat water 18.015 181 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein-tyrosine phosphatase MEG1, PTPase-MEG1, MEG' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSSPEKPTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEH THDQVVLFIKASCERHSGELMLLVRPN ; ;GSSPEKPTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEH THDQVVLFIKASCERHSGELMLLVRPN ; A,B ? 2 'polypeptide(L)' no no SWESHKSGGETRL SWESHKSGGETRL C,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 PRO n 1 5 GLU n 1 6 LYS n 1 7 PRO n 1 8 THR n 1 9 PRO n 1 10 ASN n 1 11 GLY n 1 12 GLY n 1 13 ILE n 1 14 PRO n 1 15 HIS n 1 16 ASP n 1 17 ASN n 1 18 LEU n 1 19 VAL n 1 20 LEU n 1 21 ILE n 1 22 ARG n 1 23 MET n 1 24 LYS n 1 25 PRO n 1 26 ASP n 1 27 GLU n 1 28 ASN n 1 29 GLY n 1 30 ARG n 1 31 PHE n 1 32 GLY n 1 33 PHE n 1 34 ASN n 1 35 VAL n 1 36 LYS n 1 37 GLY n 1 38 GLY n 1 39 TYR n 1 40 ASP n 1 41 GLN n 1 42 LYS n 1 43 MET n 1 44 PRO n 1 45 VAL n 1 46 ILE n 1 47 VAL n 1 48 SER n 1 49 ARG n 1 50 VAL n 1 51 ALA n 1 52 PRO n 1 53 GLY n 1 54 THR n 1 55 PRO n 1 56 ALA n 1 57 ASP n 1 58 LEU n 1 59 CYS n 1 60 VAL n 1 61 PRO n 1 62 ARG n 1 63 LEU n 1 64 ASN n 1 65 GLU n 1 66 GLY n 1 67 ASP n 1 68 GLN n 1 69 VAL n 1 70 VAL n 1 71 LEU n 1 72 ILE n 1 73 ASN n 1 74 GLY n 1 75 ARG n 1 76 ASP n 1 77 ILE n 1 78 ALA n 1 79 GLU n 1 80 HIS n 1 81 THR n 1 82 HIS n 1 83 ASP n 1 84 GLN n 1 85 VAL n 1 86 VAL n 1 87 LEU n 1 88 PHE n 1 89 ILE n 1 90 LYS n 1 91 ALA n 1 92 SER n 1 93 CYS n 1 94 GLU n 1 95 ARG n 1 96 HIS n 1 97 SER n 1 98 GLY n 1 99 GLU n 1 100 LEU n 1 101 MET n 1 102 LEU n 1 103 LEU n 1 104 VAL n 1 105 ARG n 1 106 PRO n 1 107 ASN n 2 1 SER n 2 2 TRP n 2 3 GLU n 2 4 SER n 2 5 HIS n 2 6 LYS n 2 7 SER n 2 8 GLY n 2 9 GLY n 2 10 GLU n 2 11 THR n 2 12 ARG n 2 13 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PTPN4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) star' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pDEST15 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Rabies virus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 11292 _pdbx_entity_src_syn.details 'Cyto13-att peptide has been chemically synthetized. The sequence occurs naturally in rabies virus G protein' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 498 ? ? ? A . n A 1 2 SER 2 499 ? ? ? A . n A 1 3 SER 3 500 ? ? ? A . n A 1 4 PRO 4 501 ? ? ? A . n A 1 5 GLU 5 502 ? ? ? A . n A 1 6 LYS 6 503 ? ? ? A . n A 1 7 PRO 7 504 ? ? ? A . n A 1 8 THR 8 505 ? ? ? A . n A 1 9 PRO 9 506 ? ? ? A . n A 1 10 ASN 10 507 ? ? ? A . n A 1 11 GLY 11 508 ? ? ? A . n A 1 12 GLY 12 509 ? ? ? A . n A 1 13 ILE 13 510 ? ? ? A . n A 1 14 PRO 14 511 ? ? ? A . n A 1 15 HIS 15 512 ? ? ? A . n A 1 16 ASP 16 513 513 ASP ASP A . n A 1 17 ASN 17 514 514 ASN ASN A . n A 1 18 LEU 18 515 515 LEU LEU A . n A 1 19 VAL 19 516 516 VAL VAL A . n A 1 20 LEU 20 517 517 LEU LEU A . n A 1 21 ILE 21 518 518 ILE ILE A . n A 1 22 ARG 22 519 519 ARG ARG A . n A 1 23 MET 23 520 520 MET MET A . n A 1 24 LYS 24 521 521 LYS LYS A . n A 1 25 PRO 25 522 522 PRO PRO A . n A 1 26 ASP 26 523 523 ASP ASP A . n A 1 27 GLU 27 524 524 GLU GLU A . n A 1 28 ASN 28 525 525 ASN ASN A . n A 1 29 GLY 29 526 526 GLY GLY A . n A 1 30 ARG 30 527 527 ARG ARG A . n A 1 31 PHE 31 528 528 PHE PHE A . n A 1 32 GLY 32 529 529 GLY GLY A . n A 1 33 PHE 33 530 530 PHE PHE A . n A 1 34 ASN 34 531 531 ASN ASN A . n A 1 35 VAL 35 532 532 VAL VAL A . n A 1 36 LYS 36 533 533 LYS LYS A . n A 1 37 GLY 37 534 534 GLY GLY A . n A 1 38 GLY 38 535 535 GLY GLY A . n A 1 39 TYR 39 536 536 TYR TYR A . n A 1 40 ASP 40 537 537 ASP ASP A . n A 1 41 GLN 41 538 538 GLN GLN A . n A 1 42 LYS 42 539 539 LYS LYS A . n A 1 43 MET 43 540 540 MET MET A . n A 1 44 PRO 44 541 541 PRO PRO A . n A 1 45 VAL 45 542 542 VAL VAL A . n A 1 46 ILE 46 543 543 ILE ILE A . n A 1 47 VAL 47 544 544 VAL VAL A . n A 1 48 SER 48 545 545 SER SER A . n A 1 49 ARG 49 546 546 ARG ARG A . n A 1 50 VAL 50 547 547 VAL VAL A . n A 1 51 ALA 51 548 548 ALA ALA A . n A 1 52 PRO 52 549 549 PRO PRO A . n A 1 53 GLY 53 550 550 GLY GLY A . n A 1 54 THR 54 551 551 THR THR A . n A 1 55 PRO 55 552 552 PRO PRO A . n A 1 56 ALA 56 553 553 ALA ALA A . n A 1 57 ASP 57 554 554 ASP ASP A . n A 1 58 LEU 58 555 555 LEU LEU A . n A 1 59 CYS 59 556 556 CYS CYS A . n A 1 60 VAL 60 557 557 VAL VAL A . n A 1 61 PRO 61 558 558 PRO PRO A . n A 1 62 ARG 62 559 559 ARG ARG A . n A 1 63 LEU 63 560 560 LEU LEU A . n A 1 64 ASN 64 561 561 ASN ASN A . n A 1 65 GLU 65 562 562 GLU GLU A . n A 1 66 GLY 66 563 563 GLY GLY A . n A 1 67 ASP 67 564 564 ASP ASP A . n A 1 68 GLN 68 565 565 GLN GLN A . n A 1 69 VAL 69 566 566 VAL VAL A . n A 1 70 VAL 70 567 567 VAL VAL A . n A 1 71 LEU 71 568 568 LEU LEU A . n A 1 72 ILE 72 569 569 ILE ILE A . n A 1 73 ASN 73 570 570 ASN ASN A . n A 1 74 GLY 74 571 571 GLY GLY A . n A 1 75 ARG 75 572 572 ARG ARG A . n A 1 76 ASP 76 573 573 ASP ASP A . n A 1 77 ILE 77 574 574 ILE ILE A . n A 1 78 ALA 78 575 575 ALA ALA A . n A 1 79 GLU 79 576 576 GLU GLU A . n A 1 80 HIS 80 577 577 HIS HIS A . n A 1 81 THR 81 578 578 THR THR A . n A 1 82 HIS 82 579 579 HIS HIS A . n A 1 83 ASP 83 580 580 ASP ASP A . n A 1 84 GLN 84 581 581 GLN GLN A . n A 1 85 VAL 85 582 582 VAL VAL A . n A 1 86 VAL 86 583 583 VAL VAL A . n A 1 87 LEU 87 584 584 LEU LEU A . n A 1 88 PHE 88 585 585 PHE PHE A . n A 1 89 ILE 89 586 586 ILE ILE A . n A 1 90 LYS 90 587 587 LYS LYS A . n A 1 91 ALA 91 588 588 ALA ALA A . n A 1 92 SER 92 589 589 SER SER A . n A 1 93 CYS 93 590 590 CYS CYS A . n A 1 94 GLU 94 591 591 GLU GLU A . n A 1 95 ARG 95 592 592 ARG ARG A . n A 1 96 HIS 96 593 593 HIS HIS A . n A 1 97 SER 97 594 594 SER SER A . n A 1 98 GLY 98 595 595 GLY GLY A . n A 1 99 GLU 99 596 596 GLU GLU A . n A 1 100 LEU 100 597 597 LEU LEU A . n A 1 101 MET 101 598 598 MET MET A . n A 1 102 LEU 102 599 599 LEU LEU A . n A 1 103 LEU 103 600 600 LEU LEU A . n A 1 104 VAL 104 601 601 VAL VAL A . n A 1 105 ARG 105 602 602 ARG ARG A . n A 1 106 PRO 106 603 603 PRO PRO A . n A 1 107 ASN 107 604 604 ASN ASN A . n B 1 1 GLY 1 498 ? ? ? B . n B 1 2 SER 2 499 ? ? ? B . n B 1 3 SER 3 500 ? ? ? B . n B 1 4 PRO 4 501 ? ? ? B . n B 1 5 GLU 5 502 ? ? ? B . n B 1 6 LYS 6 503 ? ? ? B . n B 1 7 PRO 7 504 ? ? ? B . n B 1 8 THR 8 505 ? ? ? B . n B 1 9 PRO 9 506 ? ? ? B . n B 1 10 ASN 10 507 ? ? ? B . n B 1 11 GLY 11 508 ? ? ? B . n B 1 12 GLY 12 509 ? ? ? B . n B 1 13 ILE 13 510 ? ? ? B . n B 1 14 PRO 14 511 ? ? ? B . n B 1 15 HIS 15 512 512 HIS HIS B . n B 1 16 ASP 16 513 513 ASP ASP B . n B 1 17 ASN 17 514 514 ASN ASN B . n B 1 18 LEU 18 515 515 LEU LEU B . n B 1 19 VAL 19 516 516 VAL VAL B . n B 1 20 LEU 20 517 517 LEU LEU B . n B 1 21 ILE 21 518 518 ILE ILE B . n B 1 22 ARG 22 519 519 ARG ARG B . n B 1 23 MET 23 520 520 MET MET B . n B 1 24 LYS 24 521 521 LYS LYS B . n B 1 25 PRO 25 522 522 PRO PRO B . n B 1 26 ASP 26 523 523 ASP ASP B . n B 1 27 GLU 27 524 524 GLU GLU B . n B 1 28 ASN 28 525 525 ASN ASN B . n B 1 29 GLY 29 526 526 GLY GLY B . n B 1 30 ARG 30 527 527 ARG ARG B . n B 1 31 PHE 31 528 528 PHE PHE B . n B 1 32 GLY 32 529 529 GLY GLY B . n B 1 33 PHE 33 530 530 PHE PHE B . n B 1 34 ASN 34 531 531 ASN ASN B . n B 1 35 VAL 35 532 532 VAL VAL B . n B 1 36 LYS 36 533 533 LYS LYS B . n B 1 37 GLY 37 534 534 GLY GLY B . n B 1 38 GLY 38 535 535 GLY GLY B . n B 1 39 TYR 39 536 536 TYR TYR B . n B 1 40 ASP 40 537 537 ASP ASP B . n B 1 41 GLN 41 538 538 GLN GLN B . n B 1 42 LYS 42 539 539 LYS LYS B . n B 1 43 MET 43 540 540 MET MET B . n B 1 44 PRO 44 541 541 PRO PRO B . n B 1 45 VAL 45 542 542 VAL VAL B . n B 1 46 ILE 46 543 543 ILE ILE B . n B 1 47 VAL 47 544 544 VAL VAL B . n B 1 48 SER 48 545 545 SER SER B . n B 1 49 ARG 49 546 546 ARG ARG B . n B 1 50 VAL 50 547 547 VAL VAL B . n B 1 51 ALA 51 548 548 ALA ALA B . n B 1 52 PRO 52 549 549 PRO PRO B . n B 1 53 GLY 53 550 550 GLY GLY B . n B 1 54 THR 54 551 551 THR THR B . n B 1 55 PRO 55 552 552 PRO PRO B . n B 1 56 ALA 56 553 553 ALA ALA B . n B 1 57 ASP 57 554 554 ASP ASP B . n B 1 58 LEU 58 555 555 LEU LEU B . n B 1 59 CYS 59 556 556 CYS CYS B . n B 1 60 VAL 60 557 557 VAL VAL B . n B 1 61 PRO 61 558 558 PRO PRO B . n B 1 62 ARG 62 559 559 ARG ARG B . n B 1 63 LEU 63 560 560 LEU LEU B . n B 1 64 ASN 64 561 561 ASN ASN B . n B 1 65 GLU 65 562 562 GLU GLU B . n B 1 66 GLY 66 563 563 GLY GLY B . n B 1 67 ASP 67 564 564 ASP ASP B . n B 1 68 GLN 68 565 565 GLN GLN B . n B 1 69 VAL 69 566 566 VAL VAL B . n B 1 70 VAL 70 567 567 VAL VAL B . n B 1 71 LEU 71 568 568 LEU LEU B . n B 1 72 ILE 72 569 569 ILE ILE B . n B 1 73 ASN 73 570 570 ASN ASN B . n B 1 74 GLY 74 571 571 GLY GLY B . n B 1 75 ARG 75 572 572 ARG ARG B . n B 1 76 ASP 76 573 573 ASP ASP B . n B 1 77 ILE 77 574 574 ILE ILE B . n B 1 78 ALA 78 575 575 ALA ALA B . n B 1 79 GLU 79 576 576 GLU GLU B . n B 1 80 HIS 80 577 577 HIS HIS B . n B 1 81 THR 81 578 578 THR THR B . n B 1 82 HIS 82 579 579 HIS HIS B . n B 1 83 ASP 83 580 580 ASP ASP B . n B 1 84 GLN 84 581 581 GLN GLN B . n B 1 85 VAL 85 582 582 VAL VAL B . n B 1 86 VAL 86 583 583 VAL VAL B . n B 1 87 LEU 87 584 584 LEU LEU B . n B 1 88 PHE 88 585 585 PHE PHE B . n B 1 89 ILE 89 586 586 ILE ILE B . n B 1 90 LYS 90 587 587 LYS LYS B . n B 1 91 ALA 91 588 588 ALA ALA B . n B 1 92 SER 92 589 589 SER SER B . n B 1 93 CYS 93 590 590 CYS CYS B . n B 1 94 GLU 94 591 591 GLU GLU B . n B 1 95 ARG 95 592 ? ? ? B . n B 1 96 HIS 96 593 ? ? ? B . n B 1 97 SER 97 594 594 SER SER B . n B 1 98 GLY 98 595 595 GLY GLY B . n B 1 99 GLU 99 596 596 GLU GLU B . n B 1 100 LEU 100 597 597 LEU LEU B . n B 1 101 MET 101 598 598 MET MET B . n B 1 102 LEU 102 599 599 LEU LEU B . n B 1 103 LEU 103 600 600 LEU LEU B . n B 1 104 VAL 104 601 601 VAL VAL B . n B 1 105 ARG 105 602 602 ARG ARG B . n B 1 106 PRO 106 603 603 PRO PRO B . n B 1 107 ASN 107 604 604 ASN ASN B . n C 2 1 SER 1 1 1 SER SER C . n C 2 2 TRP 2 2 2 TRP TRP C . n C 2 3 GLU 3 3 3 GLU GLU C . n C 2 4 SER 4 4 4 SER SER C . n C 2 5 HIS 5 5 5 HIS HIS C . n C 2 6 LYS 6 6 6 LYS LYS C . n C 2 7 SER 7 7 7 SER SER C . n C 2 8 GLY 8 8 8 GLY GLY C . n C 2 9 GLY 9 9 9 GLY GLY C . n C 2 10 GLU 10 10 10 GLU GLU C . n C 2 11 THR 11 11 11 THR THR C . n C 2 12 ARG 12 12 12 ARG ARG C . n C 2 13 LEU 13 13 13 LEU LEU C . n D 2 1 SER 1 1 ? ? ? D . n D 2 2 TRP 2 2 ? ? ? D . n D 2 3 GLU 3 3 ? ? ? D . n D 2 4 SER 4 4 ? ? ? D . n D 2 5 HIS 5 5 ? ? ? D . n D 2 6 LYS 6 6 ? ? ? D . n D 2 7 SER 7 7 ? ? ? D . n D 2 8 GLY 8 8 ? ? ? D . n D 2 9 GLY 9 9 9 GLY GLY D . n D 2 10 GLU 10 10 10 GLU GLU D . n D 2 11 THR 11 11 11 THR THR D . n D 2 12 ARG 12 12 12 ARG ARG D . n D 2 13 LEU 13 13 13 LEU LEU D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL 1 1 1 GOL GOL A . F 3 GOL 1 605 1 GOL GOL A . G 4 HOH 1 2 2 HOH HOH A . G 4 HOH 2 4 4 HOH HOH A . G 4 HOH 3 5 5 HOH HOH A . G 4 HOH 4 6 6 HOH HOH A . G 4 HOH 5 8 8 HOH HOH A . G 4 HOH 6 9 9 HOH HOH A . G 4 HOH 7 10 10 HOH HOH A . G 4 HOH 8 11 11 HOH HOH A . G 4 HOH 9 13 13 HOH HOH A . G 4 HOH 10 14 14 HOH HOH A . G 4 HOH 11 15 15 HOH HOH A . G 4 HOH 12 17 17 HOH HOH A . G 4 HOH 13 18 18 HOH HOH A . G 4 HOH 14 19 19 HOH HOH A . G 4 HOH 15 20 20 HOH HOH A . G 4 HOH 16 22 22 HOH HOH A . G 4 HOH 17 23 23 HOH HOH A . G 4 HOH 18 24 24 HOH HOH A . G 4 HOH 19 25 25 HOH HOH A . G 4 HOH 20 26 26 HOH HOH A . G 4 HOH 21 27 27 HOH HOH A . G 4 HOH 22 28 28 HOH HOH A . G 4 HOH 23 29 29 HOH HOH A . G 4 HOH 24 31 31 HOH HOH A . G 4 HOH 25 32 32 HOH HOH A . G 4 HOH 26 34 34 HOH HOH A . G 4 HOH 27 36 36 HOH HOH A . G 4 HOH 28 37 37 HOH HOH A . G 4 HOH 29 40 40 HOH HOH A . G 4 HOH 30 42 42 HOH HOH A . G 4 HOH 31 49 49 HOH HOH A . G 4 HOH 32 50 50 HOH HOH A . G 4 HOH 33 55 55 HOH HOH A . G 4 HOH 34 59 59 HOH HOH A . G 4 HOH 35 61 61 HOH HOH A . G 4 HOH 36 66 66 HOH HOH A . G 4 HOH 37 72 72 HOH HOH A . G 4 HOH 38 73 73 HOH HOH A . G 4 HOH 39 74 74 HOH HOH A . G 4 HOH 40 75 75 HOH HOH A . G 4 HOH 41 79 79 HOH HOH A . G 4 HOH 42 88 88 HOH HOH A . G 4 HOH 43 91 91 HOH HOH A . G 4 HOH 44 94 94 HOH HOH A . G 4 HOH 45 96 96 HOH HOH A . G 4 HOH 46 98 98 HOH HOH A . G 4 HOH 47 99 99 HOH HOH A . G 4 HOH 48 101 101 HOH HOH A . G 4 HOH 49 103 103 HOH HOH A . G 4 HOH 50 104 104 HOH HOH A . G 4 HOH 51 105 105 HOH HOH A . G 4 HOH 52 106 106 HOH HOH A . G 4 HOH 53 108 108 HOH HOH A . G 4 HOH 54 109 109 HOH HOH A . G 4 HOH 55 111 111 HOH HOH A . G 4 HOH 56 113 113 HOH HOH A . G 4 HOH 57 117 117 HOH HOH A . G 4 HOH 58 125 125 HOH HOH A . G 4 HOH 59 127 127 HOH HOH A . G 4 HOH 60 130 130 HOH HOH A . G 4 HOH 61 131 131 HOH HOH A . G 4 HOH 62 133 133 HOH HOH A . G 4 HOH 63 134 134 HOH HOH A . G 4 HOH 64 137 137 HOH HOH A . G 4 HOH 65 138 138 HOH HOH A . G 4 HOH 66 139 139 HOH HOH A . G 4 HOH 67 142 142 HOH HOH A . G 4 HOH 68 150 150 HOH HOH A . G 4 HOH 69 151 151 HOH HOH A . G 4 HOH 70 161 161 HOH HOH A . G 4 HOH 71 163 163 HOH HOH A . G 4 HOH 72 164 164 HOH HOH A . G 4 HOH 73 170 170 HOH HOH A . G 4 HOH 74 173 173 HOH HOH A . G 4 HOH 75 179 179 HOH HOH A . G 4 HOH 76 180 180 HOH HOH A . G 4 HOH 77 182 182 HOH HOH A . G 4 HOH 78 187 187 HOH HOH A . G 4 HOH 79 188 188 HOH HOH A . G 4 HOH 80 196 196 HOH HOH A . G 4 HOH 81 199 199 HOH HOH A . G 4 HOH 82 203 203 HOH HOH A . G 4 HOH 83 205 205 HOH HOH A . G 4 HOH 84 212 212 HOH HOH A . G 4 HOH 85 216 216 HOH HOH A . G 4 HOH 86 221 221 HOH HOH A . G 4 HOH 87 249 249 HOH HOH A . G 4 HOH 88 250 250 HOH HOH A . G 4 HOH 89 256 256 HOH HOH A . G 4 HOH 90 258 258 HOH HOH A . G 4 HOH 91 262 262 HOH HOH A . G 4 HOH 92 266 266 HOH HOH A . G 4 HOH 93 280 280 HOH HOH A . G 4 HOH 94 303 303 HOH HOH A . G 4 HOH 95 307 307 HOH HOH A . G 4 HOH 96 311 311 HOH HOH A . G 4 HOH 97 315 315 HOH HOH A . G 4 HOH 98 318 318 HOH HOH A . G 4 HOH 99 323 323 HOH HOH A . H 4 HOH 1 12 12 HOH HOH B . H 4 HOH 2 16 16 HOH HOH B . H 4 HOH 3 30 30 HOH HOH B . H 4 HOH 4 33 33 HOH HOH B . H 4 HOH 5 35 35 HOH HOH B . H 4 HOH 6 38 38 HOH HOH B . H 4 HOH 7 39 39 HOH HOH B . H 4 HOH 8 43 43 HOH HOH B . H 4 HOH 9 44 44 HOH HOH B . H 4 HOH 10 47 47 HOH HOH B . H 4 HOH 11 48 48 HOH HOH B . H 4 HOH 12 52 52 HOH HOH B . H 4 HOH 13 57 57 HOH HOH B . H 4 HOH 14 60 60 HOH HOH B . H 4 HOH 15 63 63 HOH HOH B . H 4 HOH 16 64 64 HOH HOH B . H 4 HOH 17 71 71 HOH HOH B . H 4 HOH 18 77 77 HOH HOH B . H 4 HOH 19 78 78 HOH HOH B . H 4 HOH 20 80 80 HOH HOH B . H 4 HOH 21 82 82 HOH HOH B . H 4 HOH 22 83 83 HOH HOH B . H 4 HOH 23 84 84 HOH HOH B . H 4 HOH 24 85 85 HOH HOH B . H 4 HOH 25 89 89 HOH HOH B . H 4 HOH 26 90 90 HOH HOH B . H 4 HOH 27 93 93 HOH HOH B . H 4 HOH 28 95 95 HOH HOH B . H 4 HOH 29 110 110 HOH HOH B . H 4 HOH 30 112 112 HOH HOH B . H 4 HOH 31 115 115 HOH HOH B . H 4 HOH 32 116 116 HOH HOH B . H 4 HOH 33 122 122 HOH HOH B . H 4 HOH 34 123 123 HOH HOH B . H 4 HOH 35 129 129 HOH HOH B . H 4 HOH 36 136 136 HOH HOH B . H 4 HOH 37 147 147 HOH HOH B . H 4 HOH 38 149 149 HOH HOH B . H 4 HOH 39 152 152 HOH HOH B . H 4 HOH 40 158 158 HOH HOH B . H 4 HOH 41 159 159 HOH HOH B . H 4 HOH 42 167 167 HOH HOH B . H 4 HOH 43 178 178 HOH HOH B . H 4 HOH 44 181 181 HOH HOH B . H 4 HOH 45 185 185 HOH HOH B . H 4 HOH 46 192 192 HOH HOH B . H 4 HOH 47 198 198 HOH HOH B . H 4 HOH 48 217 217 HOH HOH B . H 4 HOH 49 224 224 HOH HOH B . H 4 HOH 50 226 226 HOH HOH B . H 4 HOH 51 298 298 HOH HOH B . H 4 HOH 52 302 302 HOH HOH B . H 4 HOH 53 310 310 HOH HOH B . H 4 HOH 54 312 312 HOH HOH B . H 4 HOH 55 313 313 HOH HOH B . H 4 HOH 56 314 314 HOH HOH B . H 4 HOH 57 316 316 HOH HOH B . H 4 HOH 58 317 317 HOH HOH B . H 4 HOH 59 322 322 HOH HOH B . I 4 HOH 1 14 3 HOH HOH C . I 4 HOH 2 15 7 HOH HOH C . I 4 HOH 3 21 21 HOH HOH C . I 4 HOH 4 41 41 HOH HOH C . I 4 HOH 5 45 45 HOH HOH C . I 4 HOH 6 53 53 HOH HOH C . I 4 HOH 7 54 54 HOH HOH C . I 4 HOH 8 58 58 HOH HOH C . I 4 HOH 9 65 65 HOH HOH C . I 4 HOH 10 67 67 HOH HOH C . I 4 HOH 11 69 69 HOH HOH C . I 4 HOH 12 81 81 HOH HOH C . I 4 HOH 13 87 87 HOH HOH C . I 4 HOH 14 92 92 HOH HOH C . I 4 HOH 15 107 107 HOH HOH C . I 4 HOH 16 118 118 HOH HOH C . I 4 HOH 17 191 191 HOH HOH C . J 4 HOH 1 51 51 HOH HOH D . J 4 HOH 2 56 56 HOH HOH D . J 4 HOH 3 68 68 HOH HOH D . J 4 HOH 4 76 76 HOH HOH D . J 4 HOH 5 296 296 HOH HOH D . J 4 HOH 6 309 309 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS 593 ? CG ? A HIS 96 CG 2 1 Y 1 A HIS 593 ? ND1 ? A HIS 96 ND1 3 1 Y 1 A HIS 593 ? CD2 ? A HIS 96 CD2 4 1 Y 1 A HIS 593 ? CE1 ? A HIS 96 CE1 5 1 Y 1 A HIS 593 ? NE2 ? A HIS 96 NE2 6 1 Y 1 B TYR 536 ? CG ? B TYR 39 CG 7 1 Y 1 B TYR 536 ? CD1 ? B TYR 39 CD1 8 1 Y 1 B TYR 536 ? CD2 ? B TYR 39 CD2 9 1 Y 1 B TYR 536 ? CE1 ? B TYR 39 CE1 10 1 Y 1 B TYR 536 ? CE2 ? B TYR 39 CE2 11 1 Y 1 B TYR 536 ? CZ ? B TYR 39 CZ 12 1 Y 1 B TYR 536 ? OH ? B TYR 39 OH 13 1 Y 1 B MET 598 ? CG ? B MET 101 CG 14 1 Y 1 B MET 598 ? SD ? B MET 101 SD 15 1 Y 1 B MET 598 ? CE ? B MET 101 CE # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 PHASER phasing . ? 2 BUSTER refinement 2.9.3 ? 3 SCALA 'data scaling' . ? 4 # _cell.entry_id 3NFK _cell.length_a 53.430 _cell.length_b 53.700 _cell.length_c 81.800 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NFK _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3NFK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_percent_sol 44.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '24% PEG 1500, 20% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-05-29 _diffrn_detector.details 'BI-MORPH MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'CRYOGENICALLY COOLED MONOCHROMATOR CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.918 # _reflns.entry_id 3NFK _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.37 _reflns.d_resolution_high 1.43 _reflns.number_obs 42795 _reflns.number_all 44164 _reflns.percent_possible_obs 96.9 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11 _reflns.B_iso_Wilson_estimate 16.28 _reflns.pdbx_redundancy 3.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.43 _reflns_shell.d_res_low 1.51 _reflns_shell.percent_possible_all 98.5 _reflns_shell.Rmerge_I_obs 0.301 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.3 _reflns_shell.pdbx_redundancy 3.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 6255 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3NFK _refine.ls_number_reflns_obs 42710 _refine.ls_number_reflns_all 44167 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 14.41 _refine.ls_d_res_high 1.43 _refine.ls_percent_reflns_obs 96.70 _refine.ls_R_factor_obs 0.1927 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1921 _refine.ls_R_factor_R_free 0.2039 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.05 _refine.ls_number_reflns_R_free 2155 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9495 _refine.correlation_coeff_Fo_to_Fc_free 0.9447 _refine.B_iso_mean 20.78 _refine.aniso_B[1][1] -1.2203 _refine.aniso_B[2][2] 0.7572 _refine.aniso_B[3][3] 0.4631 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2VPH' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.062 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3NFK _refine_analyze.Luzzati_coordinate_error_obs 0.175 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1548 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 181 _refine_hist.number_atoms_total 1741 _refine_hist.d_res_high 1.43 _refine_hist.d_res_low 14.41 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.010 ? 2.00 1600 'X-RAY DIFFRACTION' ? t_angle_deg 1.14 ? 2.00 2160 'X-RAY DIFFRACTION' ? t_dihedral_angle_d ? ? 2.00 579 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 47 'X-RAY DIFFRACTION' ? t_gen_planes ? ? 5.00 232 'X-RAY DIFFRACTION' ? t_it ? ? 20.00 1600 'X-RAY DIFFRACTION' ? t_omega_torsion 4.10 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 13.85 ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 201 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 1976 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.43 _refine_ls_shell.d_res_low 1.47 _refine_ls_shell.number_reflns_R_work 3001 _refine_ls_shell.R_factor_R_work 0.1853 _refine_ls_shell.percent_reflns_obs 96.70 _refine_ls_shell.R_factor_R_free 0.2333 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.03 _refine_ls_shell.number_reflns_R_free 159 _refine_ls_shell.number_reflns_all 3160 _refine_ls_shell.R_factor_all 0.1876 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3NFK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3NFK _struct.title 'Crystal structure of the PTPN4 PDZ domain complexed with the C-terminus of a rabies virus G protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NFK _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'PDZ-PDZ-binding site complex, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PTN4_HUMAN P29074 1 ;SSPEKPTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT HDQVVLFIKASCERHSGELMLLVRPN ; 499 ? 2 UNP VGLG_RABVE P03524 2 SWESHKSGGETRL 512 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NFK A 2 ? 107 ? P29074 499 ? 604 ? 499 604 2 1 3NFK B 2 ? 107 ? P29074 499 ? 604 ? 499 604 3 2 3NFK C 1 ? 13 ? P03524 512 ? 524 ? 1 13 4 2 3NFK D 1 ? 13 ? P03524 512 ? 524 ? 1 13 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NFK GLY A 1 ? UNP P29074 ? ? 'expression tag' 498 1 2 3NFK GLY B 1 ? UNP P29074 ? ? 'expression tag' 498 2 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1220 ? 1 MORE -2 ? 1 'SSA (A^2)' 6040 ? 2 'ABSA (A^2)' 870 ? 2 MORE -3 ? 2 'SSA (A^2)' 5880 ? 3 'ABSA (A^2)' 2280 ? 3 MORE -9 ? 3 'SSA (A^2)' 11730 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,F,G,I 2 1 B,D,H,J 3 2 C,I 3 1 A,B,D,E,F,G,H,J # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_645 -x+1,y-1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 53.4300000000 0.0000000000 1.0000000000 0.0000000000 -26.8500000000 0.0000000000 0.0000000000 -1.0000000000 40.9000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 39 ? LYS A 42 ? TYR A 536 LYS A 539 5 ? 4 HELX_P HELX_P2 2 THR A 54 ? CYS A 59 ? THR A 551 CYS A 556 1 ? 6 HELX_P HELX_P3 3 THR A 81 ? ALA A 91 ? THR A 578 ALA A 588 1 ? 11 HELX_P HELX_P4 4 SER A 92 ? ARG A 95 ? SER A 589 ARG A 592 5 ? 4 HELX_P HELX_P5 5 TYR B 39 ? LYS B 42 ? TYR B 536 LYS B 539 5 ? 4 HELX_P HELX_P6 6 THR B 54 ? CYS B 59 ? THR B 551 CYS B 556 1 ? 6 HELX_P HELX_P7 7 THR B 81 ? ALA B 91 ? THR B 578 ALA B 588 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 93 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 93 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 590 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 590 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.076 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CYS _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 93 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id B _pdbx_modification_feature.modified_residue_label_seq_id 93 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id CYS _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 590 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id B _pdbx_modification_feature.modified_residue_auth_seq_id 590 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom SG _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 VAL 60 A . ? VAL 557 A PRO 61 A ? PRO 558 A 1 -11.94 2 VAL 60 B . ? VAL 557 B PRO 61 B ? PRO 558 B 1 1.24 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 4 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 19 ? MET A 23 ? VAL A 516 MET A 520 A 2 LEU A 100 ? ARG A 105 ? LEU A 597 ARG A 602 A 3 GLN A 68 ? ILE A 72 ? GLN A 565 ILE A 569 A 4 ARG A 75 ? ASP A 76 ? ARG A 572 ASP A 573 B 1 MET A 43 ? VAL A 50 ? MET A 540 VAL A 547 B 2 PHE A 33 ? GLY A 38 ? PHE A 530 GLY A 535 B 3 GLU C 10 ? ARG C 12 ? GLU C 10 ARG C 12 B 4 LYS C 6 ? SER C 7 ? LYS C 6 SER C 7 C 1 VAL B 19 ? MET B 23 ? VAL B 516 MET B 520 C 2 LEU B 100 ? ARG B 105 ? LEU B 597 ARG B 602 C 3 GLN B 68 ? ILE B 72 ? GLN B 565 ILE B 569 C 4 ARG B 75 ? ASP B 76 ? ARG B 572 ASP B 573 D 1 MET B 43 ? VAL B 50 ? MET B 540 VAL B 547 D 2 PHE B 33 ? GLY B 38 ? PHE B 530 GLY B 535 D 3 GLU D 10 ? ARG D 12 ? GLU D 10 ARG D 12 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 21 ? N ILE A 518 O LEU A 102 ? O LEU A 599 A 2 3 O LEU A 103 ? O LEU A 600 N VAL A 70 ? N VAL A 567 A 3 4 N ILE A 72 ? N ILE A 569 O ARG A 75 ? O ARG A 572 B 1 2 O MET A 43 ? O MET A 540 N GLY A 38 ? N GLY A 535 B 2 3 N VAL A 35 ? N VAL A 532 O THR C 11 ? O THR C 11 B 3 4 O GLU C 10 ? O GLU C 10 N SER C 7 ? N SER C 7 C 1 2 N ILE B 21 ? N ILE B 518 O LEU B 102 ? O LEU B 599 C 2 3 O LEU B 103 ? O LEU B 600 N VAL B 70 ? N VAL B 567 C 3 4 N ILE B 72 ? N ILE B 569 O ARG B 75 ? O ARG B 572 D 1 2 O MET B 43 ? O MET B 540 N GLY B 38 ? N GLY B 535 D 2 3 N VAL B 35 ? N VAL B 532 O THR D 11 ? O THR D 11 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 1 ? 6 'BINDING SITE FOR RESIDUE GOL A 1' AC2 Software A GOL 605 ? 9 'BINDING SITE FOR RESIDUE GOL A 605' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH G . ? HOH A 61 . ? 3_645 ? 2 AC1 6 HOH G . ? HOH A 315 . ? 3_645 ? 3 AC1 6 ASP A 40 ? ASP A 537 . ? 3_645 ? 4 AC1 6 PRO A 52 ? PRO A 549 . ? 1_555 ? 5 AC1 6 GLY A 53 ? GLY A 550 . ? 1_555 ? 6 AC1 6 ASP B 57 ? ASP B 554 . ? 4_445 ? 7 AC2 9 HOH G . ? HOH A 23 . ? 1_555 ? 8 AC2 9 HOH G . ? HOH A 28 . ? 3_645 ? 9 AC2 9 VAL A 50 ? VAL A 547 . ? 1_555 ? 10 AC2 9 ARG A 62 ? ARG A 559 . ? 1_555 ? 11 AC2 9 GLU A 65 ? GLU A 562 . ? 1_555 ? 12 AC2 9 ASP A 83 ? ASP A 580 . ? 3_645 ? 13 AC2 9 ASP B 83 ? ASP B 580 . ? 3_645 ? 14 AC2 9 TRP C 2 ? TRP C 2 . ? 3_645 ? 15 AC2 9 HOH I . ? HOH C 53 . ? 3_645 ? # _pdbx_entry_details.entry_id 3NFK _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 33.1435 -18.5056 15.3124 -0.0748 -0.0464 -0.0379 0.0017 -0.0011 0.0080 1.0555 1.2897 0.6118 0.0333 -0.0672 -0.0627 -0.0058 0.0209 0.0121 -0.0172 0.0061 -0.1331 0.0005 0.0419 -0.0003 'X-RAY DIFFRACTION' 2 ? refined 24.4260 -9.4236 18.0277 -0.0200 -0.0039 0.0056 -0.0048 -0.0143 -0.0058 2.1534 3.4346 1.7466 -0.8889 -1.1209 -0.2264 0.0393 0.1537 0.0018 -0.1086 -0.0241 0.2286 0.0717 -0.1022 -0.0152 'X-RAY DIFFRACTION' 3 ? refined 27.3935 -1.7889 -5.2299 -0.0365 0.0188 -0.0154 -0.0055 -0.0006 0.0221 1.4659 3.2971 1.8874 -1.3715 0.2031 -1.0075 -0.0566 -0.0667 0.0731 0.0211 0.1581 0.0588 -0.1304 -0.1310 -0.1014 'X-RAY DIFFRACTION' 4 ? refined 34.6610 1.0037 2.3660 0.0233 0.0082 -0.0320 0.0300 -0.0207 -0.0216 0.0207 0.0000 0.3054 0.3334 -0.8913 -0.1162 -0.0160 -0.0145 0.0308 0.0268 -0.0158 -0.0154 -0.0331 0.0132 0.0318 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 513 A 604 '{ A|513 - A|604 }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 C 1 C 13 '{ C|1 - C|13 }' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 B 512 B 591 '{ B|512 - B|591 B|594 - B|604 }' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 3 B 594 B 604 '{ B|512 - B|591 B|594 - B|604 }' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 4 D 9 D 13 '{ D|9 - D|13 }' ? ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 498 ? A GLY 1 2 1 Y 1 A SER 499 ? A SER 2 3 1 Y 1 A SER 500 ? A SER 3 4 1 Y 1 A PRO 501 ? A PRO 4 5 1 Y 1 A GLU 502 ? A GLU 5 6 1 Y 1 A LYS 503 ? A LYS 6 7 1 Y 1 A PRO 504 ? A PRO 7 8 1 Y 1 A THR 505 ? A THR 8 9 1 Y 1 A PRO 506 ? A PRO 9 10 1 Y 1 A ASN 507 ? A ASN 10 11 1 Y 1 A GLY 508 ? A GLY 11 12 1 Y 1 A GLY 509 ? A GLY 12 13 1 Y 1 A ILE 510 ? A ILE 13 14 1 Y 1 A PRO 511 ? A PRO 14 15 1 Y 1 A HIS 512 ? A HIS 15 16 1 Y 1 B GLY 498 ? B GLY 1 17 1 Y 1 B SER 499 ? B SER 2 18 1 Y 1 B SER 500 ? B SER 3 19 1 Y 1 B PRO 501 ? B PRO 4 20 1 Y 1 B GLU 502 ? B GLU 5 21 1 Y 1 B LYS 503 ? B LYS 6 22 1 Y 1 B PRO 504 ? B PRO 7 23 1 Y 1 B THR 505 ? B THR 8 24 1 Y 1 B PRO 506 ? B PRO 9 25 1 Y 1 B ASN 507 ? B ASN 10 26 1 Y 1 B GLY 508 ? B GLY 11 27 1 Y 1 B GLY 509 ? B GLY 12 28 1 Y 1 B ILE 510 ? B ILE 13 29 1 Y 1 B PRO 511 ? B PRO 14 30 1 Y 1 B ARG 592 ? B ARG 95 31 1 Y 1 B HIS 593 ? B HIS 96 32 1 Y 1 D SER 1 ? D SER 1 33 1 Y 1 D TRP 2 ? D TRP 2 34 1 Y 1 D GLU 3 ? D GLU 3 35 1 Y 1 D SER 4 ? D SER 4 36 1 Y 1 D HIS 5 ? D HIS 5 37 1 Y 1 D LYS 6 ? D LYS 6 38 1 Y 1 D SER 7 ? D SER 7 39 1 Y 1 D GLY 8 ? D GLY 8 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 THR N N N N 318 THR CA C N S 319 THR C C N N 320 THR O O N N 321 THR CB C N R 322 THR OG1 O N N 323 THR CG2 C N N 324 THR OXT O N N 325 THR H H N N 326 THR H2 H N N 327 THR HA H N N 328 THR HB H N N 329 THR HG1 H N N 330 THR HG21 H N N 331 THR HG22 H N N 332 THR HG23 H N N 333 THR HXT H N N 334 TRP N N N N 335 TRP CA C N S 336 TRP C C N N 337 TRP O O N N 338 TRP CB C N N 339 TRP CG C Y N 340 TRP CD1 C Y N 341 TRP CD2 C Y N 342 TRP NE1 N Y N 343 TRP CE2 C Y N 344 TRP CE3 C Y N 345 TRP CZ2 C Y N 346 TRP CZ3 C Y N 347 TRP CH2 C Y N 348 TRP OXT O N N 349 TRP H H N N 350 TRP H2 H N N 351 TRP HA H N N 352 TRP HB2 H N N 353 TRP HB3 H N N 354 TRP HD1 H N N 355 TRP HE1 H N N 356 TRP HE3 H N N 357 TRP HZ2 H N N 358 TRP HZ3 H N N 359 TRP HH2 H N N 360 TRP HXT H N N 361 TYR N N N N 362 TYR CA C N S 363 TYR C C N N 364 TYR O O N N 365 TYR CB C N N 366 TYR CG C Y N 367 TYR CD1 C Y N 368 TYR CD2 C Y N 369 TYR CE1 C Y N 370 TYR CE2 C Y N 371 TYR CZ C Y N 372 TYR OH O N N 373 TYR OXT O N N 374 TYR H H N N 375 TYR H2 H N N 376 TYR HA H N N 377 TYR HB2 H N N 378 TYR HB3 H N N 379 TYR HD1 H N N 380 TYR HD2 H N N 381 TYR HE1 H N N 382 TYR HE2 H N N 383 TYR HH H N N 384 TYR HXT H N N 385 VAL N N N N 386 VAL CA C N S 387 VAL C C N N 388 VAL O O N N 389 VAL CB C N N 390 VAL CG1 C N N 391 VAL CG2 C N N 392 VAL OXT O N N 393 VAL H H N N 394 VAL H2 H N N 395 VAL HA H N N 396 VAL HB H N N 397 VAL HG11 H N N 398 VAL HG12 H N N 399 VAL HG13 H N N 400 VAL HG21 H N N 401 VAL HG22 H N N 402 VAL HG23 H N N 403 VAL HXT H N N 404 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2VPH _pdbx_initial_refinement_model.details 'PDB ENTRY 2VPH' # _atom_sites.entry_id 3NFK _atom_sites.fract_transf_matrix[1][1] 0.018716 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018622 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012225 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_