HEADER LYASE 10-JUN-10 3NFU TITLE CRYSTAL STRUCTURE OF PROBABLE GLUCARATE DEHYDRATASE FROM TITLE 2 CHROMOHALOBACTER SALEXIGENS DSM 3043 COMPLEXED WITH MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCARATE DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.2.1.40; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHROMOHALOBACTER SALEXIGENS; SOURCE 3 ORGANISM_TAXID: 290398; SOURCE 4 STRAIN: DSM 3043; SOURCE 5 ATCC: BAA-138, NCIMB 13768; SOURCE 6 GENE: CSAL_2481; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LYASE, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 2 NYSGRC, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, NYSGXRC, KEYWDS 3 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,M.RUTTER,J.M.SAUDER,J.A.GERLT,S.C.ALMO, AUTHOR 2 S.K.BURLEY,NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM AUTHOR 3 (NYSGXRC),NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS AUTHOR 4 (NYSGXRC) REVDAT 5 06-SEP-23 3NFU 1 REMARK REVDAT 4 10-FEB-21 3NFU 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 2 1 LINK REVDAT 3 21-NOV-18 3NFU 1 AUTHOR REVDAT 2 24-JAN-18 3NFU 1 AUTHOR REVDAT 1 23-JUN-10 3NFU 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,M.RUTTER,J.M.SAUDER,J.A.GERLT, JRNL AUTH 2 S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF GLUCARATE DEHYDRATASE FROM JRNL TITL 2 CHROMOHALOBACTER SALEXIGENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 66758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2060 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4204 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6898 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 475 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.18000 REMARK 3 B22 (A**2) : -1.56000 REMARK 3 B33 (A**2) : 3.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.267 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7204 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9794 ; 1.227 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 916 ; 5.778 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 354 ;37.098 ;23.842 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1214 ;14.302 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 63 ;15.116 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1050 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5595 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4430 ; 3.519 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7116 ; 4.825 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2774 ; 6.107 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2660 ; 8.231 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NFU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70764 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MZN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CACODYLATE, PH 6.5, 30% REMARK 280 PEG8000, 200MM AMMONIUM SULFATE, 10% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.50450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.86550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.50450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 52.86550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 GLY A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 GLY B 442 REMARK 465 HIS B 443 REMARK 465 HIS B 444 REMARK 465 HIS B 445 REMARK 465 HIS B 446 REMARK 465 HIS B 447 REMARK 465 HIS B 448 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 40 -169.02 -104.82 REMARK 500 VAL A 206 -53.05 -127.60 REMARK 500 ASP A 257 56.82 37.89 REMARK 500 MET A 286 -43.35 -130.81 REMARK 500 THR A 314 159.57 77.37 REMARK 500 GLU B 172 -61.26 -98.23 REMARK 500 VAL B 206 -56.35 -121.03 REMARK 500 THR B 314 158.07 72.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 451 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 231 OD1 REMARK 620 2 ASP A 231 OD2 48.5 REMARK 620 3 GLU A 256 OE2 95.1 67.3 REMARK 620 4 ASP A 257 OD2 118.4 162.7 107.2 REMARK 620 5 ASN A 285 OD1 151.2 110.9 92.6 85.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 451 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 231 OD2 REMARK 620 2 ASP B 231 OD1 46.1 REMARK 620 3 ASN B 233 OD1 85.3 80.8 REMARK 620 4 GLU B 256 OE2 91.6 72.5 145.2 REMARK 620 5 ASP B 257 OD2 101.6 144.7 115.2 99.4 REMARK 620 6 ASN B 285 OD1 170.1 126.1 87.2 90.8 87.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 451 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MZN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROBABLE GLUCARATE DEHYDRATASE FROM REMARK 900 CHROMOHALOBACTER SALEXIGENS DSM 3043 REMARK 900 RELATED ID: NYSGXRC-9499T RELATED DB: TARGETDB DBREF 3NFU A 2 440 UNP Q1QUN0 Q1QUN0_CHRSD 2 440 DBREF 3NFU B 2 440 UNP Q1QUN0 Q1QUN0_CHRSD 2 440 SEQADV 3NFU MET A -1 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU SER A 0 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU LEU A 1 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU GLU A 441 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU GLY A 442 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU HIS A 443 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU HIS A 444 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU HIS A 445 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU HIS A 446 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU HIS A 447 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU HIS A 448 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU MET B -1 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU SER B 0 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU LEU B 1 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU GLU B 441 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU GLY B 442 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU HIS B 443 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU HIS B 444 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU HIS B 445 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU HIS B 446 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU HIS B 447 UNP Q1QUN0 EXPRESSION TAG SEQADV 3NFU HIS B 448 UNP Q1QUN0 EXPRESSION TAG SEQRES 1 A 450 MET SER LEU PHE PRO LYS ILE THR LYS MET ASN VAL VAL SEQRES 2 A 450 PRO VAL ALA GLY GLU ASP GLY PHE LEU LEU ASN LEU SER SEQRES 3 A 450 GLY GLY HIS GLU PRO TRP PHE ILE ARG CYS VAL LEU VAL SEQRES 4 A 450 LEU GLU ASP GLU SER GLY ASN ARG GLY VAL GLY GLU ILE SEQRES 5 A 450 PRO SER SER GLU GLY ILE LEU ASN GLY LEU GLU LYS CYS SEQRES 6 A 450 ARG SER LEU VAL GLU GLY ALA ARG VAL ASN GLU VAL LYS SEQRES 7 A 450 GLN VAL LEU SER ARG ALA ARG GLY LEU LEU ALA GLN GLY SEQRES 8 A 450 GLY PRO GLU GLU ARG GLY ARG GLN THR PHE ASP LEU ARG SEQRES 9 A 450 VAL ALA VAL HIS VAL ILE THR ALA ILE GLU SER ALA LEU SEQRES 10 A 450 PHE ASP LEU PHE GLY GLN ALA LEU GLY MET PRO VAL ALA SEQRES 11 A 450 ASP LEU LEU GLY GLN TYR GLY ARG GLN ARG ASP GLU VAL SEQRES 12 A 450 GLU ALA LEU GLY TYR LEU PHE LEU LEU GLY ASP PRO ASP SEQRES 13 A 450 LYS THR ASP LEU PRO TYR PRO ARG VAL ALA ASP PRO VAL SEQRES 14 A 450 ASP ALA TRP ASP GLU VAL ARG TYR ARG GLU ALA MET THR SEQRES 15 A 450 PRO GLU ALA VAL ALA ASN LEU ALA ARG ALA ALA TYR ASP SEQRES 16 A 450 ARG TYR GLY PHE LYS ASP PHE LYS LEU LYS GLY GLY VAL SEQRES 17 A 450 LEU ARG GLY GLU GLU GLU ALA ASP CYS ILE ARG ALA LEU SEQRES 18 A 450 HIS GLU ALA PHE PRO GLU ALA ARG LEU ALA LEU ASP PRO SEQRES 19 A 450 ASN GLY ALA TRP LYS LEU ASP GLU ALA VAL ARG VAL LEU SEQRES 20 A 450 GLU PRO ILE LYS HIS LEU LEU SER TYR ALA GLU ASP PRO SEQRES 21 A 450 CYS GLY GLN GLU GLY GLY PHE SER GLY ARG GLU THR MET SEQRES 22 A 450 ALA GLU PHE LYS LYS ARG THR GLY LEU PRO THR ALA THR SEQRES 23 A 450 ASN MET ILE ALA THR ASP TYR LYS GLN LEU GLN TYR ALA SEQRES 24 A 450 VAL GLN LEU ASN SER VAL ASP ILE PRO LEU ALA ASP CYS SEQRES 25 A 450 HIS PHE TRP THR MET GLN GLY ALA VAL ALA VAL GLY GLU SEQRES 26 A 450 LEU CYS ASN GLU TRP GLY MET THR TRP GLY SER HIS SER SEQRES 27 A 450 ASN ASN HIS PHE ASP ILE SER LEU ALA MET MET THR HIS SEQRES 28 A 450 VAL ALA ALA ALA CYS PRO GLY GLU ILE THR ALA ILE ASP SEQRES 29 A 450 THR HIS TRP ILE TRP GLN ASP GLY GLN ARG ILE THR ARG SEQRES 30 A 450 GLU PRO PHE GLN ILE ARG ASP GLY LYS LEU THR VAL PRO SEQRES 31 A 450 LYS THR PRO GLY LEU GLY ILE GLU LEU ASP ASP ASP LYS SEQRES 32 A 450 LEU MET GLU ALA HIS GLU THR TYR LYS ARG LEU ASP VAL SEQRES 33 A 450 THR GLN ARG ASN ASP ALA MET ALA MET GLN TYR LEU ILE SEQRES 34 A 450 PRO GLY TRP GLU PHE ASP PRO LYS ARG PRO ALA LEU VAL SEQRES 35 A 450 GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 450 MET SER LEU PHE PRO LYS ILE THR LYS MET ASN VAL VAL SEQRES 2 B 450 PRO VAL ALA GLY GLU ASP GLY PHE LEU LEU ASN LEU SER SEQRES 3 B 450 GLY GLY HIS GLU PRO TRP PHE ILE ARG CYS VAL LEU VAL SEQRES 4 B 450 LEU GLU ASP GLU SER GLY ASN ARG GLY VAL GLY GLU ILE SEQRES 5 B 450 PRO SER SER GLU GLY ILE LEU ASN GLY LEU GLU LYS CYS SEQRES 6 B 450 ARG SER LEU VAL GLU GLY ALA ARG VAL ASN GLU VAL LYS SEQRES 7 B 450 GLN VAL LEU SER ARG ALA ARG GLY LEU LEU ALA GLN GLY SEQRES 8 B 450 GLY PRO GLU GLU ARG GLY ARG GLN THR PHE ASP LEU ARG SEQRES 9 B 450 VAL ALA VAL HIS VAL ILE THR ALA ILE GLU SER ALA LEU SEQRES 10 B 450 PHE ASP LEU PHE GLY GLN ALA LEU GLY MET PRO VAL ALA SEQRES 11 B 450 ASP LEU LEU GLY GLN TYR GLY ARG GLN ARG ASP GLU VAL SEQRES 12 B 450 GLU ALA LEU GLY TYR LEU PHE LEU LEU GLY ASP PRO ASP SEQRES 13 B 450 LYS THR ASP LEU PRO TYR PRO ARG VAL ALA ASP PRO VAL SEQRES 14 B 450 ASP ALA TRP ASP GLU VAL ARG TYR ARG GLU ALA MET THR SEQRES 15 B 450 PRO GLU ALA VAL ALA ASN LEU ALA ARG ALA ALA TYR ASP SEQRES 16 B 450 ARG TYR GLY PHE LYS ASP PHE LYS LEU LYS GLY GLY VAL SEQRES 17 B 450 LEU ARG GLY GLU GLU GLU ALA ASP CYS ILE ARG ALA LEU SEQRES 18 B 450 HIS GLU ALA PHE PRO GLU ALA ARG LEU ALA LEU ASP PRO SEQRES 19 B 450 ASN GLY ALA TRP LYS LEU ASP GLU ALA VAL ARG VAL LEU SEQRES 20 B 450 GLU PRO ILE LYS HIS LEU LEU SER TYR ALA GLU ASP PRO SEQRES 21 B 450 CYS GLY GLN GLU GLY GLY PHE SER GLY ARG GLU THR MET SEQRES 22 B 450 ALA GLU PHE LYS LYS ARG THR GLY LEU PRO THR ALA THR SEQRES 23 B 450 ASN MET ILE ALA THR ASP TYR LYS GLN LEU GLN TYR ALA SEQRES 24 B 450 VAL GLN LEU ASN SER VAL ASP ILE PRO LEU ALA ASP CYS SEQRES 25 B 450 HIS PHE TRP THR MET GLN GLY ALA VAL ALA VAL GLY GLU SEQRES 26 B 450 LEU CYS ASN GLU TRP GLY MET THR TRP GLY SER HIS SER SEQRES 27 B 450 ASN ASN HIS PHE ASP ILE SER LEU ALA MET MET THR HIS SEQRES 28 B 450 VAL ALA ALA ALA CYS PRO GLY GLU ILE THR ALA ILE ASP SEQRES 29 B 450 THR HIS TRP ILE TRP GLN ASP GLY GLN ARG ILE THR ARG SEQRES 30 B 450 GLU PRO PHE GLN ILE ARG ASP GLY LYS LEU THR VAL PRO SEQRES 31 B 450 LYS THR PRO GLY LEU GLY ILE GLU LEU ASP ASP ASP LYS SEQRES 32 B 450 LEU MET GLU ALA HIS GLU THR TYR LYS ARG LEU ASP VAL SEQRES 33 B 450 THR GLN ARG ASN ASP ALA MET ALA MET GLN TYR LEU ILE SEQRES 34 B 450 PRO GLY TRP GLU PHE ASP PRO LYS ARG PRO ALA LEU VAL SEQRES 35 B 450 GLU GLY HIS HIS HIS HIS HIS HIS HET SO4 A 449 5 HET SO4 A 450 5 HET MG A 451 1 HET GOL A 452 6 HET SO4 B 449 5 HET SO4 B 450 5 HET MG B 451 1 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 MG 2(MG 2+) FORMUL 6 GOL C3 H8 O3 FORMUL 10 HOH *475(H2 O) HELIX 1 1 SER A 53 GLU A 68 1 16 HELIX 2 2 ARG A 71 ASN A 73 5 3 HELIX 3 3 GLU A 74 ALA A 87 1 14 HELIX 4 4 GLN A 88 GLY A 90 5 3 HELIX 5 5 VAL A 103 GLY A 124 1 22 HELIX 6 6 PRO A 126 LEU A 130 5 5 HELIX 7 7 ASP A 152 THR A 156 5 5 HELIX 8 8 ASP A 168 ARG A 174 1 7 HELIX 9 9 THR A 180 GLY A 196 1 17 HELIX 10 10 ARG A 208 PHE A 223 1 16 HELIX 11 11 LYS A 237 GLU A 246 1 10 HELIX 12 12 PRO A 247 LEU A 252 5 6 HELIX 13 13 SER A 266 GLY A 279 1 14 HELIX 14 14 ASP A 290 ASN A 301 1 12 HELIX 15 15 ASP A 309 THR A 314 1 6 HELIX 16 16 THR A 314 TRP A 328 1 15 HELIX 17 17 PHE A 340 ALA A 353 1 14 HELIX 18 18 HIS A 364 ASP A 369 1 6 HELIX 19 19 ASP A 398 ASP A 413 1 16 HELIX 20 20 ALA A 420 LEU A 426 5 7 HELIX 21 21 SER B 53 GLU B 68 1 16 HELIX 22 22 ARG B 71 ASN B 73 5 3 HELIX 23 23 GLU B 74 GLN B 88 1 15 HELIX 24 24 VAL B 103 GLY B 124 1 22 HELIX 25 25 VAL B 127 LEU B 131 5 5 HELIX 26 26 ASP B 152 THR B 156 5 5 HELIX 27 27 ALA B 169 ARG B 174 1 6 HELIX 28 28 THR B 180 GLY B 196 1 17 HELIX 29 29 ARG B 208 PHE B 223 1 16 HELIX 30 30 LYS B 237 GLU B 246 1 10 HELIX 31 31 PRO B 247 LYS B 249 5 3 HELIX 32 32 SER B 266 GLY B 279 1 14 HELIX 33 33 ASP B 290 ASN B 301 1 12 HELIX 34 34 ASP B 309 THR B 314 1 6 HELIX 35 35 THR B 314 TRP B 328 1 15 HELIX 36 36 PHE B 340 ALA B 353 1 14 HELIX 37 37 HIS B 364 ASP B 369 1 6 HELIX 38 38 ASP B 398 LEU B 412 1 15 HELIX 39 39 ASP B 419 GLN B 424 1 6 SHEET 1 A 3 ILE A 5 GLU A 16 0 SHEET 2 A 3 TRP A 30 ASP A 40 -1 O VAL A 37 N ASN A 9 SHEET 3 A 3 ARG A 45 PRO A 51 -1 O GLY A 46 N LEU A 38 SHEET 1 B 3 GLY A 25 GLY A 26 0 SHEET 2 B 3 LEU A 20 ASN A 22 -1 N ASN A 22 O GLY A 25 SHEET 3 B 3 LEU A 149 LEU A 150 -1 O LEU A 149 N LEU A 21 SHEET 1 C 3 GLU A 140 GLU A 142 0 SHEET 2 C 3 LYS A 384 THR A 386 -1 O LEU A 385 N VAL A 141 SHEET 3 C 3 ILE A 380 ARG A 381 -1 N ARG A 381 O LYS A 384 SHEET 1 D 6 GLY A 145 LEU A 147 0 SHEET 2 D 6 ASP A 199 LYS A 203 1 O LYS A 201 N LEU A 147 SHEET 3 D 6 ARG A 227 ASP A 231 1 O ASP A 231 N LEU A 202 SHEET 4 D 6 TYR A 254 GLU A 256 1 O GLU A 256 N LEU A 230 SHEET 5 D 6 THR A 282 THR A 284 1 O ALA A 283 N ALA A 255 SHEET 6 D 6 ILE A 305 PRO A 306 1 O ILE A 305 N THR A 282 SHEET 1 E 3 ILE B 5 GLU B 16 0 SHEET 2 E 3 TRP B 30 ASP B 40 -1 O VAL B 35 N VAL B 11 SHEET 3 E 3 ARG B 45 ILE B 50 -1 O ILE B 50 N CYS B 34 SHEET 1 F 2 LEU B 21 ASN B 22 0 SHEET 2 F 2 GLY B 25 GLY B 26 -1 O GLY B 25 N ASN B 22 SHEET 1 G 2 GLU B 140 GLU B 142 0 SHEET 2 G 2 LYS B 384 THR B 386 -1 O LEU B 385 N VAL B 141 SHEET 1 H 6 GLY B 145 PHE B 148 0 SHEET 2 H 6 ASP B 199 LYS B 203 1 O LYS B 201 N LEU B 147 SHEET 3 H 6 ARG B 227 ASP B 231 1 O ARG B 227 N PHE B 200 SHEET 4 H 6 TYR B 254 GLU B 256 1 O GLU B 256 N LEU B 230 SHEET 5 H 6 THR B 282 THR B 284 1 O ALA B 283 N ALA B 255 SHEET 6 H 6 ILE B 305 PRO B 306 1 O ILE B 305 N THR B 282 LINK OD1 ASP A 231 MG MG A 451 1555 1555 2.29 LINK OD2 ASP A 231 MG MG A 451 1555 1555 2.89 LINK OE2 GLU A 256 MG MG A 451 1555 1555 2.26 LINK OD2 ASP A 257 MG MG A 451 1555 1555 2.52 LINK OD1 ASN A 285 MG MG A 451 1555 1555 2.44 LINK OD2 ASP B 231 MG MG B 451 1555 1555 2.60 LINK OD1 ASP B 231 MG MG B 451 1555 1555 2.94 LINK OD1 ASN B 233 MG MG B 451 1555 1555 2.91 LINK OE2 GLU B 256 MG MG B 451 1555 1555 2.34 LINK OD2 ASP B 257 MG MG B 451 1555 1555 2.63 LINK OD1 ASN B 285 MG MG B 451 1555 1555 2.17 SITE 1 AC1 12 ASN A 22 HIS A 27 THR A 98 TYR A 146 SITE 2 AC1 12 PHE A 148 LYS A 203 ASN A 337 HIS A 364 SITE 3 AC1 12 ARG A 417 HOH A 481 HOH A 651 HOH A 652 SITE 1 AC2 3 ARG A 372 LYS A 401 ARG B 208 SITE 1 AC3 5 ASP A 231 ASN A 233 GLU A 256 ASP A 257 SITE 2 AC3 5 ASN A 285 SITE 1 AC4 6 ARG A 194 TYR A 195 ASP A 369 GLN A 379 SITE 2 AC4 6 ILE A 380 HOH A 598 SITE 1 AC5 12 ASN B 22 HIS B 27 THR B 98 TYR B 146 SITE 2 AC5 12 PHE B 148 LYS B 203 ASN B 337 HIS B 364 SITE 3 AC5 12 ARG B 417 HOH B 452 HOH B 454 HOH B 611 SITE 1 AC6 3 ARG B 372 LYS B 401 HOH B 535 SITE 1 AC7 5 ASP B 231 ASN B 233 GLU B 256 ASP B 257 SITE 2 AC7 5 ASN B 285 CRYST1 135.009 105.731 87.991 90.00 128.97 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007407 0.000000 0.005992 0.00000 SCALE2 0.000000 0.009458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014618 0.00000