HEADER LYASE 10-JUN-10 3NFV TITLE CRYSTAL STRUCTURE OF AN ALGINATE LYASE (BACOVA_01668) FROM BACTEROIDES TITLE 2 OVATUS AT 1.95 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALGINATE LYASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483; SOURCE 5 GENE: BACOVA_01668; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3NFV 1 REMARK SEQADV REVDAT 3 17-JUL-19 3NFV 1 REMARK LINK REVDAT 2 08-NOV-17 3NFV 1 REMARK REVDAT 1 28-JUL-10 3NFV 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF AN ALGINATE LYASE (BACOVA_01668) FROM JRNL TITL 2 BACTEROIDES OVATUS AT 1.95 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 31217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1572 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2127 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 415 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.00000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.259 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3211 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2275 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4325 ; 1.435 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5560 ; 0.930 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ; 5.379 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;33.464 ;24.859 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 576 ;13.563 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.921 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 454 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3511 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 615 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1934 ; 1.874 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 775 ; 0.572 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3117 ; 2.797 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1277 ; 4.767 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1199 ; 6.642 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ISOPROPANOL (IPA) AND ETHYLENE GLYCOL (EDO) REMARK 3 MODELED IS PRESENT IN CRYSTALLIZATION/CRYO CONDITIONS. 3. REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 4 REMARK 4 3NFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97922 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31230 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 43.402 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.000000000% ISO-PROPANOL, REMARK 280 20.000000000% PEG-4000, 0.1M CITRATE PH 5.6, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.06650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 20 CG CD OE1 NE2 REMARK 470 LYS A 203 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 202 O HOH A 476 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 114 -153.44 -99.70 REMARK 500 ASN A 238 -154.88 -111.86 REMARK 500 ARG A 272 -57.57 -121.56 REMARK 500 GLN A 350 87.12 -153.79 REMARK 500 TYR A 397 62.97 -117.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 415 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 416788 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 20-400) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3NFV A 20 400 UNP A7LV19 A7LV19_BACOV 20 400 SEQADV 3NFV GLY A 0 UNP A7LV19 EXPRESSION TAG SEQRES 1 A 382 GLY GLN VAL ALA ASN THR ARG ILE TYR ALA ALA GLU LYS SEQRES 2 A 382 LEU ALA LYS VAL LYS GLU LYS ALA ASP SER PRO LEU TYR SEQRES 3 A 382 ALA PRO ALA VAL LYS THR LEU LEU ARG ASP ALA ASP LYS SEQRES 4 A 382 ALA LEU LYS MSE THR PRO PRO SER VAL MSE ASP LYS THR SEQRES 5 A 382 MSE THR ALA ASP SER GLY ASP LYS HIS ASP TYR MSE SER SEQRES 6 A 382 MSE GLY PRO TYR TRP TRP PRO ASP PRO SER LYS PRO ASP SEQRES 7 A 382 GLY LEU PRO TYR ILE ARG LYS ASP GLY GLN ARG ASN PRO SEQRES 8 A 382 GLU LEU ASP LYS LEU ASP ARG ASN LYS LEU GLY ASP MSE SEQRES 9 A 382 SER LYS ALA VAL THR THR LEU GLY LEU ALA TYR TYR PHE SEQRES 10 A 382 SER GLY ASP GLU LYS TYR ALA GLN LYS ALA VAL ASP PHE SEQRES 11 A 382 LEU ASN VAL TRP PHE LEU ASP ALA LYS THR LYS MSE ASN SEQRES 12 A 382 PRO HIS LEU THR TYR GLY GLN THR ILE PRO GLY LYS ASN SEQRES 13 A 382 LYS GLY MSE GLY ARG GLY ALA GLY MSE ILE ASP ILE TYR SEQRES 14 A 382 SER PHE THR GLU MSE ILE ASP ALA MSE THR LEU MSE GLU SEQRES 15 A 382 ASN SER LYS ALA PHE THR PRO LYS VAL LYS LYS GLY MSE SEQRES 16 A 382 LYS GLU TRP PHE THR GLN LEU VAL GLU TRP MSE GLN THR SEQRES 17 A 382 SER PRO VAL ALA ALA GLU GLU GLN ARG ALA LYS ASN ASN SEQRES 18 A 382 HIS GLY LEU ALA TYR ASP VAL GLN LEU THR ALA TYR ALA SEQRES 19 A 382 LEU TYR THR GLY ASN GLN ASP LEU ALA MSE LYS THR ILE SEQRES 20 A 382 GLN GLU PHE PRO GLU LYS ARG LEU PHE ALA GLN ILE GLU SEQRES 21 A 382 PRO ASP GLY LYS GLN PRO LEU GLU LEU ALA ARG THR THR SEQRES 22 A 382 ALA LEU GLY TYR THR ILE PHE ASN LEU GLY HIS MSE LEU SEQRES 23 A 382 ASP MSE CYS SER ILE ALA SER THR LEU GLY GLN ASP ILE SEQRES 24 A 382 TYR ASN ALA THR SER GLN ASP GLY ARG SER ILE THR ALA SEQRES 25 A 382 ALA LEU LYS PHE LEU ILE PRO TYR ILE GLY LYS PRO GLN SEQRES 26 A 382 SER GLU TRP PRO TYR GLN GLN ILE LYS GLU TRP ASP LYS SEQRES 27 A 382 LYS GLN GLU GLU ALA CYS TRP ILE LEU ARG ARG ALA SER SEQRES 28 A 382 PHE PHE ASP PRO LYS ALA GLY TYR GLU ALA ILE GLY ALA SEQRES 29 A 382 GLN PHE ARG GLU THR PRO ALA ASN LYS ARG ILE HIS LEU SEQRES 30 A 382 ILE TYR SER LEU GLU MODRES 3NFV MSE A 61 MET SELENOMETHIONINE MODRES 3NFV MSE A 67 MET SELENOMETHIONINE MODRES 3NFV MSE A 71 MET SELENOMETHIONINE MODRES 3NFV MSE A 82 MET SELENOMETHIONINE MODRES 3NFV MSE A 84 MET SELENOMETHIONINE MODRES 3NFV MSE A 122 MET SELENOMETHIONINE MODRES 3NFV MSE A 160 MET SELENOMETHIONINE MODRES 3NFV MSE A 177 MET SELENOMETHIONINE MODRES 3NFV MSE A 183 MET SELENOMETHIONINE MODRES 3NFV MSE A 192 MET SELENOMETHIONINE MODRES 3NFV MSE A 196 MET SELENOMETHIONINE MODRES 3NFV MSE A 199 MET SELENOMETHIONINE MODRES 3NFV MSE A 213 MET SELENOMETHIONINE MODRES 3NFV MSE A 224 MET SELENOMETHIONINE MODRES 3NFV MSE A 262 MET SELENOMETHIONINE MODRES 3NFV MSE A 303 MET SELENOMETHIONINE MODRES 3NFV MSE A 306 MET SELENOMETHIONINE HET MSE A 61 8 HET MSE A 67 8 HET MSE A 71 8 HET MSE A 82 8 HET MSE A 84 8 HET MSE A 122 8 HET MSE A 160 8 HET MSE A 177 8 HET MSE A 183 8 HET MSE A 192 8 HET MSE A 196 8 HET MSE A 199 8 HET MSE A 213 8 HET MSE A 224 8 HET MSE A 262 8 HET MSE A 303 8 HET MSE A 306 8 HET IPA A 401 4 HET IPA A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET EDO A 411 4 HET EDO A 412 4 HET EDO A 413 4 HET EDO A 414 4 HET EDO A 415 4 HETNAM MSE SELENOMETHIONINE HETNAM IPA ISOPROPYL ALCOHOL HETNAM EDO 1,2-ETHANEDIOL HETSYN IPA 2-PROPANOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 17(C5 H11 N O2 SE) FORMUL 2 IPA 2(C3 H8 O) FORMUL 4 EDO 13(C2 H6 O2) FORMUL 17 HOH *415(H2 O) HELIX 1 1 ALA A 28 LYS A 38 1 11 HELIX 2 2 TYR A 44 MSE A 61 1 18 HELIX 3 3 SER A 65 LYS A 69 5 5 HELIX 4 4 ASN A 108 LEU A 114 5 7 HELIX 5 5 ASP A 115 GLY A 137 1 23 HELIX 6 6 ASP A 138 LEU A 154 1 17 HELIX 7 7 LYS A 173 MSE A 177 5 5 HELIX 8 8 ARG A 179 TYR A 187 5 9 HELIX 9 9 SER A 188 MSE A 199 1 12 HELIX 10 10 THR A 206 SER A 227 1 22 HELIX 11 11 SER A 227 ARG A 235 1 9 HELIX 12 12 ASN A 238 THR A 255 1 18 HELIX 13 13 ASN A 257 ARG A 272 1 16 HELIX 14 14 ARG A 272 ILE A 277 1 6 HELIX 15 15 GLN A 283 ALA A 288 1 6 HELIX 16 16 THR A 291 LEU A 313 1 23 HELIX 17 17 SER A 327 ILE A 336 1 10 HELIX 18 18 PRO A 337 ILE A 339 5 3 HELIX 19 19 PRO A 342 TRP A 346 5 5 HELIX 20 20 GLU A 353 PHE A 370 1 18 HELIX 21 21 PHE A 371 ALA A 375 5 5 HELIX 22 22 GLY A 376 GLN A 383 1 8 HELIX 23 23 ARG A 392 TYR A 397 1 6 SHEET 1 A 2 MSE A 82 MSE A 84 0 SHEET 2 A 2 TYR A 166 THR A 169 1 O THR A 169 N SER A 83 SHEET 1 B 2 TRP A 88 TRP A 89 0 SHEET 2 B 2 ILE A 101 ARG A 102 -1 O ILE A 101 N TRP A 89 LINK C LYS A 60 N MSE A 61 1555 1555 1.33 LINK C MSE A 61 N THR A 62 1555 1555 1.34 LINK C VAL A 66 N MSE A 67 1555 1555 1.32 LINK C MSE A 67 N ASP A 68 1555 1555 1.34 LINK C THR A 70 N MSE A 71 1555 1555 1.34 LINK C MSE A 71 N THR A 72 1555 1555 1.34 LINK C TYR A 81 N MSE A 82 1555 1555 1.32 LINK C MSE A 82 N SER A 83 1555 1555 1.33 LINK C SER A 83 N MSE A 84 1555 1555 1.33 LINK C MSE A 84 N GLY A 85 1555 1555 1.32 LINK C ASP A 121 N MSE A 122 1555 1555 1.34 LINK C MSE A 122 N SER A 123 1555 1555 1.33 LINK C LYS A 159 N MSE A 160 1555 1555 1.35 LINK C MSE A 160 N ASN A 161 1555 1555 1.33 LINK C GLY A 176 N MSE A 177 1555 1555 1.33 LINK C MSE A 177 N GLY A 178 1555 1555 1.32 LINK C GLY A 182 N MSE A 183 1555 1555 1.33 LINK C MSE A 183 N ILE A 184 1555 1555 1.34 LINK C GLU A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N ILE A 193 1555 1555 1.34 LINK C ALA A 195 N MSE A 196 1555 1555 1.33 LINK C MSE A 196 N THR A 197 1555 1555 1.34 LINK C LEU A 198 N MSE A 199 1555 1555 1.32 LINK C MSE A 199 N GLU A 200 1555 1555 1.33 LINK C GLY A 212 N MSE A 213 1555 1555 1.32 LINK C MSE A 213 N LYS A 214 1555 1555 1.33 LINK C TRP A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N GLN A 225 1555 1555 1.33 LINK C ALA A 261 N MSE A 262 1555 1555 1.34 LINK C MSE A 262 N LYS A 263 1555 1555 1.32 LINK C HIS A 302 N MSE A 303 1555 1555 1.34 LINK C MSE A 303 N LEU A 304 1555 1555 1.31 LINK C ASP A 305 N MSE A 306 1555 1555 1.34 LINK C MSE A 306 N CYS A 307 1555 1555 1.33 CISPEP 1 LEU A 98 PRO A 99 0 -5.35 SITE 1 AC1 6 ARG A 107 ASN A 108 PRO A 109 LEU A 111 SITE 2 AC1 6 ASN A 117 HOH A 462 SITE 1 AC2 8 MSE A 82 GLY A 176 HOH A 463 HOH A 522 SITE 2 AC2 8 HOH A 541 HOH A 561 HOH A 625 HOH A 805 SITE 1 AC3 3 LYS A 103 GLN A 106 HOH A 813 SITE 1 AC4 5 MSE A 67 ASP A 68 LYS A 78 PRO A 279 SITE 2 AC4 5 EDO A 405 SITE 1 AC5 3 PRO A 279 ASP A 280 EDO A 404 SITE 1 AC6 8 TRP A 88 ARG A 102 ARG A 179 ARG A 289 SITE 2 AC6 8 HOH A 453 HOH A 470 HOH A 534 HOH A 595 SITE 1 AC7 5 THR A 291 GLY A 294 TYR A 295 LYS A 357 SITE 2 AC7 5 HOH A 481 SITE 1 AC8 3 PRO A 337 TYR A 338 GLU A 345 SITE 1 AC9 4 LYS A 173 ASN A 174 ARG A 179 HOH A 785 SITE 1 BC1 6 GLN A 266 GLN A 315 ASP A 316 ILE A 317 SITE 2 BC1 6 HOH A 546 HOH A 579 SITE 1 BC2 3 ARG A 235 ARG A 272 HOH A 679 SITE 1 BC3 7 GLY A 301 HIS A 302 ASP A 305 ARG A 367 SITE 2 BC3 7 HOH A 619 HOH A 751 HOH A 812 SITE 1 BC4 3 LYS A 333 ILE A 336 ALA A 375 SITE 1 BC5 4 GLU A 30 LYS A 34 GLU A 400 HOH A 803 SITE 1 BC6 6 ALA A 156 THR A 321 SER A 322 GLN A 323 SITE 2 BC6 6 HOH A 439 HOH A 827 CRYST1 55.115 54.133 75.361 90.00 105.49 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018144 0.000000 0.005027 0.00000 SCALE2 0.000000 0.018473 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013769 0.00000