HEADER SIGNAL RECOGNITION 13-SEP-98 3NG1 TITLE N AND GTPASE DOMAINS OF THE SIGNAL SEQUENCE RECOGNITION PROTEIN FFH TITLE 2 FROM THERMUS AQUATICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL SEQUENCE RECOGNITION PROTEIN FFH; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NG GTPASE FRAGMENT; COMPND 5 SYNONYM: FFH; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 3 ORGANISM_TAXID: 271; SOURCE 4 GENE: FFH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSE; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3C KEYWDS FFH, SRP, GTPASE, SIGNAL RECOGNITION PARTICLE, SIGNAL RECOGNITION EXPDTA X-RAY DIFFRACTION AUTHOR D.M.FREYMANN,R.M.STROUD,P.WALTER REVDAT 4 09-AUG-23 3NG1 1 REMARK LINK REVDAT 3 24-FEB-09 3NG1 1 VERSN REVDAT 2 13-MAR-00 3NG1 1 JRNL REVDAT 1 30-JUL-99 3NG1 0 JRNL AUTH D.M.FREYMANN,R.J.KEENAN,R.M.STROUD,P.WALTER JRNL TITL FUNCTIONAL CHANGES IN THE STRUCTURE OF THE SRP GTPASE ON JRNL TITL 2 BINDING GDP AND MG2+GDP. JRNL REF NAT.STRUCT.BIOL. V. 6 793 1999 JRNL REFN ISSN 1072-8368 JRNL PMID 10426959 JRNL DOI 10.1038/11572 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.J.KEENAN,D.M.FREYMANN,P.WALTER,R.M.STROUD REMARK 1 TITL CRYSTAL STRUCTURE OF THE SIGNAL SEQUENCE BINDING SUBUNIT OF REMARK 1 TITL 2 THE SIGNAL RECOGNITION PARTICLE REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 94 181 1998 REMARK 1 REFN ISSN 0092-8674 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.M.FREYMANN,R.J.KEENAN,R.M.STROUD,P.WALTER REMARK 1 TITL STRUCTURE OF THE CONSERVED GTPASE DOMAIN OF THE SIGNAL REMARK 1 TITL 2 RECOGNITION PARTICLE REMARK 1 REF NATURE V. 385 361 1997 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 28595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2319 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2104 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 203 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4534 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 196 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.020 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.560 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : CONSTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: A BULK SOLVENT CORRECTION WAS APPLIED. REMARK 4 REMARK 4 3NG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-97 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 180 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SOFTWARE AT SYNCHROTRON REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32541 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : 0.41700 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: PDB ENTRY 1FFH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.65500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.91500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.50500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.91500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.65500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.50500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 19 37.09 -148.37 REMARK 500 ARG A 252 -80.77 -82.98 REMARK 500 ARG B 19 37.07 -148.35 REMARK 500 ARG B 252 -80.81 -82.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE CADMIUM ION WHICH MEDIATES THE CRYSTAL CONTACT (CD REMARK 600 701) IS COORDINATED BY GLU 11 AND GLU 33 OF THE MONOMER IN REMARK 600 THIS ENTRY, AND BY GLU 46 AND ASP 50 OF AN NCS RELATED REMARK 600 MONOMER. THEREFORE THE SIDECHAINS OF GLU 46 AND ASP 50 IN REMARK 600 THIS ENTRY COORDINATE THE CADMIUM ION RELATED BY REMARK 600 NON-CRYSTALLOGRAPHIC SYMMETRY. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 701 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 GLU A 11 OE2 53.2 REMARK 620 3 GLU A 33 OE1 83.5 133.5 REMARK 620 4 GLU A 33 OE2 90.4 103.7 55.4 REMARK 620 5 GLU B 46 OE2 98.9 107.3 94.1 146.9 REMARK 620 6 ASP B 50 OD1 166.2 139.5 85.8 90.6 73.1 REMARK 620 7 ASP B 50 OD2 143.2 90.1 130.8 99.1 92.2 49.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 701 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 46 OE2 REMARK 620 2 ASP A 50 OD1 74.2 REMARK 620 3 ASP A 50 OD2 94.4 51.0 REMARK 620 4 GLU B 11 OE1 98.1 166.1 142.5 REMARK 620 5 GLU B 11 OE2 107.8 139.9 89.4 53.1 REMARK 620 6 GLU B 33 OE1 92.7 85.3 131.1 83.5 133.5 REMARK 620 7 GLU B 33 OE2 145.9 89.9 98.7 90.4 103.7 55.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 702 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 285 OE1 REMARK 620 2 GLU A 285 OE2 53.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 702 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 285 OE1 REMARK 620 2 GLU B 285 OE2 53.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: A1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: GTPASE BINDING SITE MOTIF. REMARK 800 REMARK 800 SITE_IDENTIFIER: A2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: GTPASE BINDING SITE MOTIF. REMARK 800 REMARK 800 SITE_IDENTIFIER: A3 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: GTPASE BINDING SITE MOTIF. REMARK 800 REMARK 800 SITE_IDENTIFIER: A4 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: GTPASE BINDING SITE MOTIF. REMARK 800 REMARK 800 SITE_IDENTIFIER: B1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: GTPASE BINDING SITE MOTIF. REMARK 800 REMARK 800 SITE_IDENTIFIER: B2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: GTPASE BINDING SITE MOTIF. REMARK 800 REMARK 800 SITE_IDENTIFIER: B3 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: GTPASE BINDING SITE MOTIF. REMARK 800 REMARK 800 SITE_IDENTIFIER: B4 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: GTPASE BINDING SITE MOTIF. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 750 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 750 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 970 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 971 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 970 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 971 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FFH RELATED DB: PDB REMARK 900 APO-NG STRUCTURE REMARK 900 RELATED ID: 1NG1 RELATED DB: PDB REMARK 900 NG GTPASE WITH BOUND MGGDP REMARK 900 RELATED ID: 2NG1 RELATED DB: PDB REMARK 900 NG GTPASE WITH BOUND GDP DBREF 3NG1 A 2 294 UNP O07347 SRP54_THEAQ 1 293 DBREF 3NG1 B 2 294 UNP O07347 SRP54_THEAQ 1 293 SEQRES 1 A 294 MET PHE GLN GLN LEU SER ALA ARG LEU GLN GLU ALA ILE SEQRES 2 A 294 GLY ARG LEU ARG GLY ARG GLY ARG ILE THR GLU GLU ASP SEQRES 3 A 294 LEU LYS ALA THR LEU ARG GLU ILE ARG ARG ALA LEU MET SEQRES 4 A 294 ASP ALA ASP VAL ASN LEU GLU VAL ALA ARG ASP PHE VAL SEQRES 5 A 294 GLU ARG VAL ARG GLU GLU ALA LEU GLY LYS GLN VAL LEU SEQRES 6 A 294 GLU SER LEU THR PRO ALA GLU VAL ILE LEU ALA THR VAL SEQRES 7 A 294 TYR GLU ALA LEU LYS GLU ALA LEU GLY GLY GLU ALA ARG SEQRES 8 A 294 LEU PRO VAL LEU LYS ASP ARG ASN LEU TRP PHE LEU VAL SEQRES 9 A 294 GLY LEU GLN GLY SER GLY LYS THR THR THR ALA ALA LYS SEQRES 10 A 294 LEU ALA LEU TYR TYR LYS GLY LYS GLY ARG ARG PRO LEU SEQRES 11 A 294 LEU VAL ALA ALA ASP THR GLN ARG PRO ALA ALA ARG GLU SEQRES 12 A 294 GLN LEU ARG LEU LEU GLY GLU LYS VAL GLY VAL PRO VAL SEQRES 13 A 294 LEU GLU VAL MET ASP GLY GLU SER PRO GLU SER ILE ARG SEQRES 14 A 294 ARG ARG VAL GLU GLU LYS ALA ARG LEU GLU ALA ARG ASP SEQRES 15 A 294 LEU ILE LEU VAL ASP THR ALA GLY ARG LEU GLN ILE ASP SEQRES 16 A 294 GLU PRO LEU MET GLY GLU LEU ALA ARG LEU LYS GLU VAL SEQRES 17 A 294 LEU GLY PRO ASP GLU VAL LEU LEU VAL LEU ASP ALA MET SEQRES 18 A 294 THR GLY GLN GLU ALA LEU SER VAL ALA ARG ALA PHE ASP SEQRES 19 A 294 GLU LYS VAL GLY VAL THR GLY LEU VAL LEU THR LYS LEU SEQRES 20 A 294 ASP GLY ASP ALA ARG GLY GLY ALA ALA LEU SER ALA ARG SEQRES 21 A 294 HIS VAL THR GLY LYS PRO ILE TYR PHE ALA GLY VAL SER SEQRES 22 A 294 GLU LYS PRO GLU GLY LEU GLU PRO PHE TYR PRO GLU ARG SEQRES 23 A 294 LEU ALA GLY ARG ILE LEU GLY MET SEQRES 1 B 294 MET PHE GLN GLN LEU SER ALA ARG LEU GLN GLU ALA ILE SEQRES 2 B 294 GLY ARG LEU ARG GLY ARG GLY ARG ILE THR GLU GLU ASP SEQRES 3 B 294 LEU LYS ALA THR LEU ARG GLU ILE ARG ARG ALA LEU MET SEQRES 4 B 294 ASP ALA ASP VAL ASN LEU GLU VAL ALA ARG ASP PHE VAL SEQRES 5 B 294 GLU ARG VAL ARG GLU GLU ALA LEU GLY LYS GLN VAL LEU SEQRES 6 B 294 GLU SER LEU THR PRO ALA GLU VAL ILE LEU ALA THR VAL SEQRES 7 B 294 TYR GLU ALA LEU LYS GLU ALA LEU GLY GLY GLU ALA ARG SEQRES 8 B 294 LEU PRO VAL LEU LYS ASP ARG ASN LEU TRP PHE LEU VAL SEQRES 9 B 294 GLY LEU GLN GLY SER GLY LYS THR THR THR ALA ALA LYS SEQRES 10 B 294 LEU ALA LEU TYR TYR LYS GLY LYS GLY ARG ARG PRO LEU SEQRES 11 B 294 LEU VAL ALA ALA ASP THR GLN ARG PRO ALA ALA ARG GLU SEQRES 12 B 294 GLN LEU ARG LEU LEU GLY GLU LYS VAL GLY VAL PRO VAL SEQRES 13 B 294 LEU GLU VAL MET ASP GLY GLU SER PRO GLU SER ILE ARG SEQRES 14 B 294 ARG ARG VAL GLU GLU LYS ALA ARG LEU GLU ALA ARG ASP SEQRES 15 B 294 LEU ILE LEU VAL ASP THR ALA GLY ARG LEU GLN ILE ASP SEQRES 16 B 294 GLU PRO LEU MET GLY GLU LEU ALA ARG LEU LYS GLU VAL SEQRES 17 B 294 LEU GLY PRO ASP GLU VAL LEU LEU VAL LEU ASP ALA MET SEQRES 18 B 294 THR GLY GLN GLU ALA LEU SER VAL ALA ARG ALA PHE ASP SEQRES 19 B 294 GLU LYS VAL GLY VAL THR GLY LEU VAL LEU THR LYS LEU SEQRES 20 B 294 ASP GLY ASP ALA ARG GLY GLY ALA ALA LEU SER ALA ARG SEQRES 21 B 294 HIS VAL THR GLY LYS PRO ILE TYR PHE ALA GLY VAL SER SEQRES 22 B 294 GLU LYS PRO GLU GLY LEU GLU PRO PHE TYR PRO GLU ARG SEQRES 23 B 294 LEU ALA GLY ARG ILE LEU GLY MET HET CD A 701 1 HET CD A 702 1 HET CD A 703 1 HET SO4 A 750 5 HET EDO A 970 4 HET EDO A 971 4 HET CD B 701 1 HET CD B 702 1 HET CD B 703 1 HET SO4 B 750 5 HET EDO B 970 4 HET EDO B 971 4 HETNAM CD CADMIUM ION HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CD 6(CD 2+) FORMUL 6 SO4 2(O4 S 2-) FORMUL 7 EDO 4(C2 H6 O2) FORMUL 15 HOH *196(H2 O) HELIX 1 1 GLN A 3 LEU A 16 1 14 HELIX 2 2 GLU A 24 ASP A 40 1 17 HELIX 3 3 LEU A 45 LYS A 62 1 18 HELIX 4 4 PRO A 70 LEU A 86 1 17 HELIX 5 5 LYS A 111 LYS A 125 1 15 HELIX 6 6 PRO A 139 VAL A 152 1 14 HELIX 7 7 PRO A 165 GLU A 179 1 15 HELIX 8 8 GLU A 196 LEU A 209 1 14 HELIX 9 9 ALA A 220 LYS A 236 5 17 HELIX 10 10 GLY A 254 THR A 263 1 10 HELIX 11 11 PRO A 284 ILE A 291 1 8 HELIX 12 12 GLN B 3 LEU B 16 1 14 HELIX 13 13 GLU B 24 ASP B 40 1 17 HELIX 14 14 LEU B 45 LYS B 62 1 18 HELIX 15 15 PRO B 70 LEU B 86 1 17 HELIX 16 16 LYS B 111 LYS B 125 1 15 HELIX 17 17 PRO B 139 VAL B 152 1 14 HELIX 18 18 PRO B 165 GLU B 179 1 15 HELIX 19 19 GLU B 196 LEU B 209 1 14 HELIX 20 20 ALA B 220 LYS B 236 5 17 HELIX 21 21 GLY B 254 THR B 263 1 10 HELIX 22 22 PRO B 284 ILE B 291 1 8 SHEET 1 A 8 LEU A 279 PRO A 281 0 SHEET 2 A 8 ILE A 267 GLY A 271 -1 N ALA A 270 O GLU A 280 SHEET 3 A 8 GLY A 241 THR A 245 1 N LEU A 242 O TYR A 268 SHEET 4 A 8 GLU A 213 ASP A 219 1 N LEU A 216 O GLY A 241 SHEET 5 A 8 ASN A 99 VAL A 104 1 N PHE A 102 O GLU A 213 SHEET 6 A 8 LEU A 183 ASP A 187 1 N ILE A 184 O ASN A 99 SHEET 7 A 8 PRO A 129 ALA A 133 1 N LEU A 130 O LEU A 183 SHEET 8 A 8 VAL A 156 GLU A 158 1 N LEU A 157 O LEU A 131 SHEET 1 B 8 LEU B 279 PRO B 281 0 SHEET 2 B 8 ILE B 267 GLY B 271 -1 N ALA B 270 O GLU B 280 SHEET 3 B 8 GLY B 241 THR B 245 1 N LEU B 242 O TYR B 268 SHEET 4 B 8 GLU B 213 ASP B 219 1 N LEU B 216 O GLY B 241 SHEET 5 B 8 ASN B 99 VAL B 104 1 N PHE B 102 O GLU B 213 SHEET 6 B 8 LEU B 183 ASP B 187 1 N ILE B 184 O ASN B 99 SHEET 7 B 8 PRO B 129 ALA B 133 1 N LEU B 130 O LEU B 183 SHEET 8 B 8 VAL B 156 GLU B 158 1 N LEU B 157 O LEU B 131 LINK OE1 GLU A 11 CD CD A 701 1555 1555 2.51 LINK OE2 GLU A 11 CD CD A 701 1555 1555 2.40 LINK OE1 GLU A 33 CD CD A 701 1555 1555 2.38 LINK OE2 GLU A 33 CD CD A 701 1555 1555 2.35 LINK OE2 GLU A 46 CD CD B 701 4555 1555 2.30 LINK OD1 ASP A 50 CD CD B 701 4555 1555 2.75 LINK OD2 ASP A 50 CD CD B 701 4555 1555 2.24 LINK NE2 HIS A 261 CD CD A 703 1555 1555 2.40 LINK OE1 GLU A 285 CD CD A 702 1555 1555 2.57 LINK OE2 GLU A 285 CD CD A 702 1555 1555 2.25 LINK CD CD A 701 OE2 GLU B 46 1555 1555 2.32 LINK CD CD A 701 OD1 ASP B 50 1555 1555 2.78 LINK CD CD A 701 OD2 ASP B 50 1555 1555 2.30 LINK OE1 GLU B 11 CD CD B 701 1555 1555 2.51 LINK OE2 GLU B 11 CD CD B 701 1555 1555 2.40 LINK OE1 GLU B 33 CD CD B 701 1555 1555 2.38 LINK OE2 GLU B 33 CD CD B 701 1555 1555 2.35 LINK NE2 HIS B 261 CD CD B 703 1555 1555 2.40 LINK OE1 GLU B 285 CD CD B 702 1555 1555 2.57 LINK OE2 GLU B 285 CD CD B 702 1555 1555 2.25 SITE 1 A1 8 GLY A 105 LEU A 106 GLN A 107 GLY A 108 SITE 2 A1 8 SER A 109 GLY A 110 LYS A 111 THR A 112 SITE 1 A2 7 ASP A 135 THR A 136 GLN A 137 ARG A 138 SITE 2 A2 7 PRO A 139 ALA A 140 ALA A 141 SITE 1 A3 6 ASP A 187 THR A 188 ALA A 189 GLY A 190 SITE 2 A3 6 ARG A 191 LEU A 192 SITE 1 A4 4 THR A 245 LYS A 246 LEU A 247 ASP A 248 SITE 1 B1 8 GLY B 105 LEU B 106 GLN B 107 GLY B 108 SITE 2 B1 8 SER B 109 GLY B 110 LYS B 111 THR B 112 SITE 1 B2 7 ASP B 135 THR B 136 GLN B 137 ARG B 138 SITE 2 B2 7 PRO B 139 ALA B 140 ALA B 141 SITE 1 B3 6 ASP B 187 THR B 188 ALA B 189 GLY B 190 SITE 2 B3 6 ARG B 191 LEU B 192 SITE 1 B4 4 THR B 245 LYS B 246 LEU B 247 ASP B 248 SITE 1 AC1 4 GLU A 11 GLU A 33 GLU B 46 ASP B 50 SITE 1 AC2 1 GLU A 285 SITE 1 AC3 1 HIS A 261 SITE 1 AC4 7 GLY A 108 SER A 109 GLY A 110 LYS A 111 SITE 2 AC4 7 THR A 112 THR A 113 GLN A 144 SITE 1 AC5 4 GLU A 46 ASP A 50 GLU B 11 GLU B 33 SITE 1 AC6 1 GLU B 285 SITE 1 AC7 1 HIS B 261 SITE 1 AC8 7 GLY B 108 SER B 109 GLY B 110 LYS B 111 SITE 2 AC8 7 THR B 112 THR B 113 GLN B 144 SITE 1 AC9 7 GLY A 105 LEU A 106 GLY A 190 ARG A 191 SITE 2 AC9 7 GLN A 193 ASP A 195 MET A 199 SITE 1 BC1 8 ALA A 133 ALA A 134 ASP A 135 ALA A 141 SITE 2 BC1 8 ARG A 142 LEU A 145 ASP A 187 THR A 188 SITE 1 BC2 7 GLY B 105 LEU B 106 GLY B 190 ARG B 191 SITE 2 BC2 7 GLN B 193 ASP B 195 MET B 199 SITE 1 BC3 8 ALA B 133 ALA B 134 ASP B 135 ALA B 141 SITE 2 BC3 8 ARG B 142 LEU B 145 ASP B 187 THR B 188 CRYST1 73.310 99.010 99.830 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013641 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010017 0.00000 MTRIX1 1 1.000000 0.001700 -0.000600 18.30170 1 MTRIX2 1 0.000600 -0.007100 1.000000 24.99160 1 MTRIX3 1 0.001700 -1.000000 -0.007100 24.75630 1