data_3NGH # _entry.id 3NGH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NGH pdb_00003ngh 10.2210/pdb3ngh/pdb RCSB RCSB059798 ? ? WWPDB D_1000059798 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2EDZ _pdbx_database_related.details 'NMR structure of mouse PDZK1 PDZ1' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NGH _pdbx_database_status.recvd_initial_deposition_date 2010-06-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kocher, O.' 1 'Birrane, G.' 2 'Krieger, M.' 3 'Ladias, J.A.' 4 # _citation.id primary _citation.title ;In vitro and in vivo analysis of the binding of the C terminus of the HDL receptor scavenger receptor class B, type I (SR-BI), to the PDZ1 domain of its adaptor protein PDZK1. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 34999 _citation.page_last 35010 _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20739281 _citation.pdbx_database_id_DOI 10.1074/jbc.M110.164418 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kocher, O.' 1 ? primary 'Birrane, G.' 2 ? primary 'Tsukamoto, K.' 3 ? primary 'Fenske, S.' 4 ? primary 'Yesilaltay, A.' 5 ? primary 'Pal, R.' 6 ? primary 'Daniels, K.' 7 ? primary 'Ladias, J.A.' 8 ? primary 'Krieger, M.' 9 ? # _cell.entry_id 3NGH _cell.length_a 35.604 _cell.length_b 55.114 _cell.length_c 111.055 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NGH _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PDZ domain-containing protein 1' 11838.280 2 ? C5S 'residues 7-106' ? 2 water nat water 18.015 187 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;NHERF-3, Na(+)/H(+) exchange regulatory cofactor NHE-RF3, CFTR-associated protein of 70 kDa, Na/Pi cotransporter C-terminal-associated protein 1, NaPi-Cap1, Sodium-hydrogen exchanger regulatory factor 3, Na(+)/H(+) exchanger regulatory factor 3 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL VLDGDSYEKAVKNQVDLKELDQEAKL ; _entity_poly.pdbx_seq_one_letter_code_can ;GPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL VLDGDSYEKAVKNQVDLKELDQEAKL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 ARG n 1 4 GLU n 1 5 SER n 1 6 LYS n 1 7 LEU n 1 8 SER n 1 9 LYS n 1 10 GLN n 1 11 GLU n 1 12 GLY n 1 13 GLN n 1 14 ASN n 1 15 TYR n 1 16 GLY n 1 17 PHE n 1 18 PHE n 1 19 LEU n 1 20 ARG n 1 21 ILE n 1 22 GLU n 1 23 LYS n 1 24 ASP n 1 25 THR n 1 26 ASP n 1 27 GLY n 1 28 HIS n 1 29 LEU n 1 30 ILE n 1 31 ARG n 1 32 VAL n 1 33 ILE n 1 34 GLU n 1 35 GLU n 1 36 GLY n 1 37 SER n 1 38 PRO n 1 39 ALA n 1 40 GLU n 1 41 LYS n 1 42 ALA n 1 43 GLY n 1 44 LEU n 1 45 LEU n 1 46 ASP n 1 47 GLY n 1 48 ASP n 1 49 ARG n 1 50 VAL n 1 51 LEU n 1 52 ARG n 1 53 ILE n 1 54 ASN n 1 55 GLY n 1 56 VAL n 1 57 PHE n 1 58 VAL n 1 59 ASP n 1 60 LYS n 1 61 GLU n 1 62 GLU n 1 63 HIS n 1 64 ALA n 1 65 GLN n 1 66 VAL n 1 67 VAL n 1 68 GLU n 1 69 LEU n 1 70 VAL n 1 71 ARG n 1 72 LYS n 1 73 SER n 1 74 GLY n 1 75 ASN n 1 76 SER n 1 77 VAL n 1 78 THR n 1 79 LEU n 1 80 LEU n 1 81 VAL n 1 82 LEU n 1 83 ASP n 1 84 GLY n 1 85 ASP n 1 86 SER n 1 87 TYR n 1 88 GLU n 1 89 LYS n 1 90 ALA n 1 91 VAL n 1 92 LYS n 1 93 ASN n 1 94 GLN n 1 95 VAL n 1 96 ASP n 1 97 LEU n 1 98 LYS n 1 99 GLU n 1 100 LEU n 1 101 ASP n 1 102 GLN n 1 103 GLU n 1 104 ALA n 1 105 LYS n 1 106 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Cap70, Nherf3, Pdzk1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'C41(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMal-c2x _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NHRF3_MOUSE _struct_ref.pdbx_db_accession Q9JIL4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV LDGDSYEKAVKNQVDLKELD ; _struct_ref.pdbx_align_begin 7 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NGH A 2 ? 101 ? Q9JIL4 7 ? 106 ? 7 106 2 1 3NGH B 2 ? 101 ? Q9JIL4 7 ? 106 ? 7 106 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NGH GLY A 1 ? UNP Q9JIL4 ? ? 'expression tag' 6 1 1 3NGH SER A 5 ? UNP Q9JIL4 CYS 10 'engineered mutation' 10 2 1 3NGH GLN A 102 ? UNP Q9JIL4 ? ? 'SEE REMARK 999' 107 3 1 3NGH GLU A 103 ? UNP Q9JIL4 ? ? 'SEE REMARK 999' 108 4 1 3NGH ALA A 104 ? UNP Q9JIL4 ? ? 'SEE REMARK 999' 109 5 1 3NGH LYS A 105 ? UNP Q9JIL4 ? ? 'SEE REMARK 999' 110 6 1 3NGH LEU A 106 ? UNP Q9JIL4 ? ? 'SEE REMARK 999' 111 7 2 3NGH GLY B 1 ? UNP Q9JIL4 ? ? 'expression tag' 6 8 2 3NGH SER B 5 ? UNP Q9JIL4 CYS 10 'engineered mutation' 10 9 2 3NGH GLN B 102 ? UNP Q9JIL4 ? ? 'SEE REMARK 999' 107 10 2 3NGH GLU B 103 ? UNP Q9JIL4 ? ? 'SEE REMARK 999' 108 11 2 3NGH ALA B 104 ? UNP Q9JIL4 ? ? 'SEE REMARK 999' 109 12 2 3NGH LYS B 105 ? UNP Q9JIL4 ? ? 'SEE REMARK 999' 110 13 2 3NGH LEU B 106 ? UNP Q9JIL4 ? ? 'SEE REMARK 999' 111 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3NGH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '100mM Tris/HCl, 40% PEG 200, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2009-06-01 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1 # _reflns.entry_id 3NGH _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 30.7 _reflns.d_resolution_high 1.65 _reflns.number_obs 26518 _reflns.number_all 26518 _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs 0.488 _reflns.pdbx_Rsym_value 0.545 _reflns.pdbx_netI_over_sigmaI 41.1 _reflns.B_iso_Wilson_estimate 26.9 _reflns.pdbx_redundancy 10.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 91.7 _reflns_shell.Rmerge_I_obs 0.055 _reflns_shell.pdbx_Rsym_value 0.056 _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.pdbx_redundancy 5.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1235 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3NGH _refine.ls_number_reflns_obs 19752 _refine.ls_number_reflns_all 19752 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.91 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 98.88 _refine.ls_R_factor_obs 0.20158 _refine.ls_R_factor_all 0.20158 _refine.ls_R_factor_R_work 0.19973 _refine.ls_R_factor_R_free 0.23763 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 1003 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.B_iso_mean 27.334 _refine.aniso_B[1][1] 0.02 _refine.aniso_B[2][2] 0.11 _refine.aniso_B[3][3] -0.13 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 2EDZ _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.135 _refine.overall_SU_ML 0.105 _refine.overall_SU_B 7.595 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1666 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 187 _refine_hist.number_atoms_total 1853 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 29.91 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.022 0.022 ? 1722 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1217 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.851 1.990 ? 2315 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.967 3.000 ? 2987 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.209 5.000 ? 220 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 44.405 25.506 ? 89 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.274 15.000 ? 345 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.297 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.123 0.200 ? 257 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 1935 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 318 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.100 1.500 ? 1062 'X-RAY DIFFRACTION' ? r_mcbond_other 0.335 1.500 ? 444 'X-RAY DIFFRACTION' ? r_mcangle_it 1.887 2.000 ? 1705 'X-RAY DIFFRACTION' ? r_scbond_it 2.900 3.000 ? 660 'X-RAY DIFFRACTION' ? r_scangle_it 4.677 4.500 ? 606 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.8000 _refine_ls_shell.d_res_low 1.8470 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.0100 _refine_ls_shell.number_reflns_R_work 1396 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2280 _refine_ls_shell.R_factor_R_free 0.3180 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 63 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1459 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3NGH _struct.title 'Molecular Analysis of the Interaction of the HDL Receptor SR-BI with the Adaptor Protein PDZK1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NGH _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'PDZ domain, Adaptor protein, SR-BI, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 37 ? ALA A 42 ? SER A 42 ALA A 47 1 ? 6 HELX_P HELX_P2 2 GLU A 62 ? SER A 73 ? GLU A 67 SER A 78 1 ? 12 HELX_P HELX_P3 3 ASP A 83 ? ASN A 93 ? ASP A 88 ASN A 98 1 ? 11 HELX_P HELX_P4 4 ASP A 96 ? LEU A 100 ? ASP A 101 LEU A 105 5 ? 5 HELX_P HELX_P5 5 SER B 37 ? GLY B 43 ? SER B 42 GLY B 48 1 ? 7 HELX_P HELX_P6 6 GLU B 62 ? SER B 73 ? GLU B 67 SER B 78 1 ? 12 HELX_P HELX_P7 7 ASP B 83 ? ASN B 93 ? ASP B 88 ASN B 98 1 ? 11 HELX_P HELX_P8 8 ASP B 96 ? LEU B 100 ? ASP B 101 LEU B 105 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 3 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 3 ? SER A 8 ? ARG A 8 SER A 13 A 2 SER A 76 ? LEU A 82 ? SER A 81 LEU A 87 A 3 ARG A 49 ? ILE A 53 ? ARG A 54 ILE A 58 A 4 VAL A 56 ? PHE A 57 ? VAL A 61 PHE A 62 B 1 PHE A 18 ? ARG A 20 ? PHE A 23 ARG A 25 B 2 LEU A 29 ? ARG A 31 ? LEU A 34 ARG A 36 C 1 GLU A 103 ? LYS A 105 ? GLU A 108 LYS A 110 C 2 PHE B 18 ? ARG B 20 ? PHE B 23 ARG B 25 C 3 LEU B 29 ? ARG B 31 ? LEU B 34 ARG B 36 D 1 ARG B 3 ? SER B 8 ? ARG B 8 SER B 13 D 2 SER B 76 ? LEU B 82 ? SER B 81 LEU B 87 D 3 ARG B 49 ? ILE B 53 ? ARG B 54 ILE B 58 D 4 VAL B 56 ? PHE B 57 ? VAL B 61 PHE B 62 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 5 ? N SER A 10 O LEU A 79 ? O LEU A 84 A 2 3 O LEU A 80 ? O LEU A 85 N LEU A 51 ? N LEU A 56 A 3 4 N ILE A 53 ? N ILE A 58 O VAL A 56 ? O VAL A 61 B 1 2 N PHE A 18 ? N PHE A 23 O ARG A 31 ? O ARG A 36 C 1 2 N ALA A 104 ? N ALA A 109 O LEU B 19 ? O LEU B 24 C 2 3 N PHE B 18 ? N PHE B 23 O ARG B 31 ? O ARG B 36 D 1 2 N SER B 5 ? N SER B 10 O LEU B 79 ? O LEU B 84 D 2 3 O LEU B 80 ? O LEU B 85 N LEU B 51 ? N LEU B 56 D 3 4 N ILE B 53 ? N ILE B 58 O VAL B 56 ? O VAL B 61 # _database_PDB_matrix.entry_id 3NGH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3NGH _atom_sites.fract_transf_matrix[1][1] 0.028087 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018144 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009005 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 6 6 GLY GLY A . n A 1 2 PRO 2 7 7 PRO PRO A . n A 1 3 ARG 3 8 8 ARG ARG A . n A 1 4 GLU 4 9 9 GLU GLU A . n A 1 5 SER 5 10 10 SER SER A . n A 1 6 LYS 6 11 11 LYS LYS A . n A 1 7 LEU 7 12 12 LEU LEU A . n A 1 8 SER 8 13 13 SER SER A . n A 1 9 LYS 9 14 14 LYS LYS A . n A 1 10 GLN 10 15 15 GLN GLN A . n A 1 11 GLU 11 16 16 GLU GLU A . n A 1 12 GLY 12 17 17 GLY GLY A . n A 1 13 GLN 13 18 18 GLN GLN A . n A 1 14 ASN 14 19 19 ASN ASN A . n A 1 15 TYR 15 20 20 TYR TYR A . n A 1 16 GLY 16 21 21 GLY GLY A . n A 1 17 PHE 17 22 22 PHE PHE A . n A 1 18 PHE 18 23 23 PHE PHE A . n A 1 19 LEU 19 24 24 LEU LEU A . n A 1 20 ARG 20 25 25 ARG ARG A . n A 1 21 ILE 21 26 26 ILE ILE A . n A 1 22 GLU 22 27 27 GLU GLU A . n A 1 23 LYS 23 28 28 LYS LYS A . n A 1 24 ASP 24 29 29 ASP ASP A . n A 1 25 THR 25 30 30 THR THR A . n A 1 26 ASP 26 31 31 ASP ASP A . n A 1 27 GLY 27 32 32 GLY GLY A . n A 1 28 HIS 28 33 33 HIS HIS A . n A 1 29 LEU 29 34 34 LEU LEU A . n A 1 30 ILE 30 35 35 ILE ILE A . n A 1 31 ARG 31 36 36 ARG ARG A . n A 1 32 VAL 32 37 37 VAL VAL A . n A 1 33 ILE 33 38 38 ILE ILE A . n A 1 34 GLU 34 39 39 GLU GLU A . n A 1 35 GLU 35 40 40 GLU GLU A . n A 1 36 GLY 36 41 41 GLY GLY A . n A 1 37 SER 37 42 42 SER SER A . n A 1 38 PRO 38 43 43 PRO PRO A . n A 1 39 ALA 39 44 44 ALA ALA A . n A 1 40 GLU 40 45 45 GLU GLU A . n A 1 41 LYS 41 46 46 LYS LYS A . n A 1 42 ALA 42 47 47 ALA ALA A . n A 1 43 GLY 43 48 48 GLY GLY A . n A 1 44 LEU 44 49 49 LEU LEU A . n A 1 45 LEU 45 50 50 LEU LEU A . n A 1 46 ASP 46 51 51 ASP ASP A . n A 1 47 GLY 47 52 52 GLY GLY A . n A 1 48 ASP 48 53 53 ASP ASP A . n A 1 49 ARG 49 54 54 ARG ARG A . n A 1 50 VAL 50 55 55 VAL VAL A . n A 1 51 LEU 51 56 56 LEU LEU A . n A 1 52 ARG 52 57 57 ARG ARG A . n A 1 53 ILE 53 58 58 ILE ILE A . n A 1 54 ASN 54 59 59 ASN ASN A . n A 1 55 GLY 55 60 60 GLY GLY A . n A 1 56 VAL 56 61 61 VAL VAL A . n A 1 57 PHE 57 62 62 PHE PHE A . n A 1 58 VAL 58 63 63 VAL VAL A . n A 1 59 ASP 59 64 64 ASP ASP A . n A 1 60 LYS 60 65 65 LYS LYS A . n A 1 61 GLU 61 66 66 GLU GLU A . n A 1 62 GLU 62 67 67 GLU GLU A . n A 1 63 HIS 63 68 68 HIS HIS A . n A 1 64 ALA 64 69 69 ALA ALA A . n A 1 65 GLN 65 70 70 GLN GLN A . n A 1 66 VAL 66 71 71 VAL VAL A . n A 1 67 VAL 67 72 72 VAL VAL A . n A 1 68 GLU 68 73 73 GLU GLU A . n A 1 69 LEU 69 74 74 LEU LEU A . n A 1 70 VAL 70 75 75 VAL VAL A . n A 1 71 ARG 71 76 76 ARG ARG A . n A 1 72 LYS 72 77 77 LYS LYS A . n A 1 73 SER 73 78 78 SER SER A . n A 1 74 GLY 74 79 79 GLY GLY A . n A 1 75 ASN 75 80 80 ASN ASN A . n A 1 76 SER 76 81 81 SER SER A . n A 1 77 VAL 77 82 82 VAL VAL A . n A 1 78 THR 78 83 83 THR THR A . n A 1 79 LEU 79 84 84 LEU LEU A . n A 1 80 LEU 80 85 85 LEU LEU A . n A 1 81 VAL 81 86 86 VAL VAL A . n A 1 82 LEU 82 87 87 LEU LEU A . n A 1 83 ASP 83 88 88 ASP ASP A . n A 1 84 GLY 84 89 89 GLY GLY A . n A 1 85 ASP 85 90 90 ASP ASP A . n A 1 86 SER 86 91 91 SER SER A . n A 1 87 TYR 87 92 92 TYR TYR A . n A 1 88 GLU 88 93 93 GLU GLU A . n A 1 89 LYS 89 94 94 LYS LYS A . n A 1 90 ALA 90 95 95 ALA ALA A . n A 1 91 VAL 91 96 96 VAL VAL A . n A 1 92 LYS 92 97 97 LYS LYS A . n A 1 93 ASN 93 98 98 ASN ASN A . n A 1 94 GLN 94 99 99 GLN GLN A . n A 1 95 VAL 95 100 100 VAL VAL A . n A 1 96 ASP 96 101 101 ASP ASP A . n A 1 97 LEU 97 102 102 LEU LEU A . n A 1 98 LYS 98 103 103 LYS LYS A . n A 1 99 GLU 99 104 104 GLU GLU A . n A 1 100 LEU 100 105 105 LEU LEU A . n A 1 101 ASP 101 106 106 ASP ASP A . n A 1 102 GLN 102 107 107 GLN GLN A . n A 1 103 GLU 103 108 108 GLU GLU A . n A 1 104 ALA 104 109 109 ALA ALA A . n A 1 105 LYS 105 110 110 LYS LYS A . n A 1 106 LEU 106 111 111 LEU LEU A . n B 1 1 GLY 1 6 6 GLY GLY B . n B 1 2 PRO 2 7 7 PRO PRO B . n B 1 3 ARG 3 8 8 ARG ARG B . n B 1 4 GLU 4 9 9 GLU GLU B . n B 1 5 SER 5 10 10 SER SER B . n B 1 6 LYS 6 11 11 LYS LYS B . n B 1 7 LEU 7 12 12 LEU LEU B . n B 1 8 SER 8 13 13 SER SER B . n B 1 9 LYS 9 14 14 LYS LYS B . n B 1 10 GLN 10 15 15 GLN GLN B . n B 1 11 GLU 11 16 16 GLU GLU B . n B 1 12 GLY 12 17 17 GLY GLY B . n B 1 13 GLN 13 18 18 GLN GLN B . n B 1 14 ASN 14 19 19 ASN ASN B . n B 1 15 TYR 15 20 20 TYR TYR B . n B 1 16 GLY 16 21 21 GLY GLY B . n B 1 17 PHE 17 22 22 PHE PHE B . n B 1 18 PHE 18 23 23 PHE PHE B . n B 1 19 LEU 19 24 24 LEU LEU B . n B 1 20 ARG 20 25 25 ARG ARG B . n B 1 21 ILE 21 26 26 ILE ILE B . n B 1 22 GLU 22 27 27 GLU GLU B . n B 1 23 LYS 23 28 28 LYS LYS B . n B 1 24 ASP 24 29 29 ASP ASP B . n B 1 25 THR 25 30 30 THR THR B . n B 1 26 ASP 26 31 31 ASP ASP B . n B 1 27 GLY 27 32 32 GLY GLY B . n B 1 28 HIS 28 33 33 HIS HIS B . n B 1 29 LEU 29 34 34 LEU LEU B . n B 1 30 ILE 30 35 35 ILE ILE B . n B 1 31 ARG 31 36 36 ARG ARG B . n B 1 32 VAL 32 37 37 VAL VAL B . n B 1 33 ILE 33 38 38 ILE ILE B . n B 1 34 GLU 34 39 39 GLU GLU B . n B 1 35 GLU 35 40 40 GLU GLU B . n B 1 36 GLY 36 41 41 GLY GLY B . n B 1 37 SER 37 42 42 SER SER B . n B 1 38 PRO 38 43 43 PRO PRO B . n B 1 39 ALA 39 44 44 ALA ALA B . n B 1 40 GLU 40 45 45 GLU GLU B . n B 1 41 LYS 41 46 46 LYS LYS B . n B 1 42 ALA 42 47 47 ALA ALA B . n B 1 43 GLY 43 48 48 GLY GLY B . n B 1 44 LEU 44 49 49 LEU LEU B . n B 1 45 LEU 45 50 50 LEU LEU B . n B 1 46 ASP 46 51 51 ASP ASP B . n B 1 47 GLY 47 52 52 GLY GLY B . n B 1 48 ASP 48 53 53 ASP ASP B . n B 1 49 ARG 49 54 54 ARG ARG B . n B 1 50 VAL 50 55 55 VAL VAL B . n B 1 51 LEU 51 56 56 LEU LEU B . n B 1 52 ARG 52 57 57 ARG ARG B . n B 1 53 ILE 53 58 58 ILE ILE B . n B 1 54 ASN 54 59 59 ASN ASN B . n B 1 55 GLY 55 60 60 GLY GLY B . n B 1 56 VAL 56 61 61 VAL VAL B . n B 1 57 PHE 57 62 62 PHE PHE B . n B 1 58 VAL 58 63 63 VAL VAL B . n B 1 59 ASP 59 64 64 ASP ASP B . n B 1 60 LYS 60 65 65 LYS LYS B . n B 1 61 GLU 61 66 66 GLU GLU B . n B 1 62 GLU 62 67 67 GLU GLU B . n B 1 63 HIS 63 68 68 HIS HIS B . n B 1 64 ALA 64 69 69 ALA ALA B . n B 1 65 GLN 65 70 70 GLN GLN B . n B 1 66 VAL 66 71 71 VAL VAL B . n B 1 67 VAL 67 72 72 VAL VAL B . n B 1 68 GLU 68 73 73 GLU GLU B . n B 1 69 LEU 69 74 74 LEU LEU B . n B 1 70 VAL 70 75 75 VAL VAL B . n B 1 71 ARG 71 76 76 ARG ARG B . n B 1 72 LYS 72 77 77 LYS LYS B . n B 1 73 SER 73 78 78 SER SER B . n B 1 74 GLY 74 79 79 GLY GLY B . n B 1 75 ASN 75 80 80 ASN ASN B . n B 1 76 SER 76 81 81 SER SER B . n B 1 77 VAL 77 82 82 VAL VAL B . n B 1 78 THR 78 83 83 THR THR B . n B 1 79 LEU 79 84 84 LEU LEU B . n B 1 80 LEU 80 85 85 LEU LEU B . n B 1 81 VAL 81 86 86 VAL VAL B . n B 1 82 LEU 82 87 87 LEU LEU B . n B 1 83 ASP 83 88 88 ASP ASP B . n B 1 84 GLY 84 89 89 GLY GLY B . n B 1 85 ASP 85 90 90 ASP ASP B . n B 1 86 SER 86 91 91 SER SER B . n B 1 87 TYR 87 92 92 TYR TYR B . n B 1 88 GLU 88 93 93 GLU GLU B . n B 1 89 LYS 89 94 94 LYS LYS B . n B 1 90 ALA 90 95 95 ALA ALA B . n B 1 91 VAL 91 96 96 VAL VAL B . n B 1 92 LYS 92 97 97 LYS LYS B . n B 1 93 ASN 93 98 98 ASN ASN B . n B 1 94 GLN 94 99 99 GLN GLN B . n B 1 95 VAL 95 100 100 VAL VAL B . n B 1 96 ASP 96 101 101 ASP ASP B . n B 1 97 LEU 97 102 102 LEU LEU B . n B 1 98 LYS 98 103 103 LYS LYS B . n B 1 99 GLU 99 104 104 GLU GLU B . n B 1 100 LEU 100 105 105 LEU LEU B . n B 1 101 ASP 101 106 106 ASP ASP B . n B 1 102 GLN 102 107 107 GLN GLN B . n B 1 103 GLU 103 108 108 GLU GLU B . n B 1 104 ALA 104 109 109 ALA ALA B . n B 1 105 LYS 105 110 110 LYS LYS B . n B 1 106 LEU 106 111 111 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 3 3 HOH HOH A . C 2 HOH 2 112 112 HOH HOH A . C 2 HOH 3 113 6 HOH HOH A . C 2 HOH 4 114 7 HOH HOH A . C 2 HOH 5 115 115 HOH HOH A . C 2 HOH 6 116 116 HOH HOH A . C 2 HOH 7 117 8 HOH HOH A . C 2 HOH 8 118 9 HOH HOH A . C 2 HOH 9 119 119 HOH HOH A . C 2 HOH 10 120 120 HOH HOH A . C 2 HOH 11 121 13 HOH HOH A . C 2 HOH 12 122 14 HOH HOH A . C 2 HOH 13 123 123 HOH HOH A . C 2 HOH 14 124 15 HOH HOH A . C 2 HOH 15 125 125 HOH HOH A . C 2 HOH 16 126 17 HOH HOH A . C 2 HOH 17 127 127 HOH HOH A . C 2 HOH 18 128 22 HOH HOH A . C 2 HOH 19 129 24 HOH HOH A . C 2 HOH 20 130 130 HOH HOH A . C 2 HOH 21 131 131 HOH HOH A . C 2 HOH 22 132 25 HOH HOH A . C 2 HOH 23 133 133 HOH HOH A . C 2 HOH 24 134 26 HOH HOH A . C 2 HOH 25 135 135 HOH HOH A . C 2 HOH 26 136 136 HOH HOH A . C 2 HOH 27 137 27 HOH HOH A . C 2 HOH 28 138 138 HOH HOH A . C 2 HOH 29 139 139 HOH HOH A . C 2 HOH 30 140 140 HOH HOH A . C 2 HOH 31 141 33 HOH HOH A . C 2 HOH 32 142 142 HOH HOH A . C 2 HOH 33 143 34 HOH HOH A . C 2 HOH 34 144 35 HOH HOH A . C 2 HOH 35 145 37 HOH HOH A . C 2 HOH 36 146 38 HOH HOH A . C 2 HOH 37 147 39 HOH HOH A . C 2 HOH 38 148 148 HOH HOH A . C 2 HOH 39 149 40 HOH HOH A . C 2 HOH 40 150 49 HOH HOH A . C 2 HOH 41 151 151 HOH HOH A . C 2 HOH 42 152 50 HOH HOH A . C 2 HOH 43 153 54 HOH HOH A . C 2 HOH 44 154 154 HOH HOH A . C 2 HOH 45 155 56 HOH HOH A . C 2 HOH 46 156 156 HOH HOH A . C 2 HOH 47 157 157 HOH HOH A . C 2 HOH 48 158 158 HOH HOH A . C 2 HOH 49 159 57 HOH HOH A . C 2 HOH 50 160 160 HOH HOH A . C 2 HOH 51 161 59 HOH HOH A . C 2 HOH 52 162 162 HOH HOH A . C 2 HOH 53 163 63 HOH HOH A . C 2 HOH 54 164 164 HOH HOH A . C 2 HOH 55 165 165 HOH HOH A . C 2 HOH 56 166 166 HOH HOH A . C 2 HOH 57 167 65 HOH HOH A . C 2 HOH 58 168 67 HOH HOH A . C 2 HOH 59 169 68 HOH HOH A . C 2 HOH 60 170 69 HOH HOH A . C 2 HOH 61 171 171 HOH HOH A . C 2 HOH 62 172 71 HOH HOH A . C 2 HOH 63 173 173 HOH HOH A . C 2 HOH 64 174 72 HOH HOH A . C 2 HOH 65 175 175 HOH HOH A . C 2 HOH 66 176 73 HOH HOH A . C 2 HOH 67 177 76 HOH HOH A . C 2 HOH 68 178 178 HOH HOH A . C 2 HOH 69 179 77 HOH HOH A . C 2 HOH 70 180 78 HOH HOH A . C 2 HOH 71 181 86 HOH HOH A . C 2 HOH 72 182 182 HOH HOH A . C 2 HOH 73 183 87 HOH HOH A . C 2 HOH 74 184 88 HOH HOH A . C 2 HOH 75 185 92 HOH HOH A . C 2 HOH 76 186 186 HOH HOH A . C 2 HOH 77 187 93 HOH HOH A . C 2 HOH 78 188 95 HOH HOH A . C 2 HOH 79 189 189 HOH HOH A . C 2 HOH 80 190 98 HOH HOH A . C 2 HOH 81 191 191 HOH HOH A . C 2 HOH 82 192 101 HOH HOH A . C 2 HOH 83 193 193 HOH HOH A . C 2 HOH 84 194 194 HOH HOH A . C 2 HOH 85 195 102 HOH HOH A . C 2 HOH 86 196 103 HOH HOH A . C 2 HOH 87 197 105 HOH HOH A . C 2 HOH 88 198 198 HOH HOH A . C 2 HOH 89 199 199 HOH HOH A . C 2 HOH 90 200 107 HOH HOH A . C 2 HOH 91 201 110 HOH HOH A . C 2 HOH 92 203 203 HOH HOH A . D 2 HOH 1 2 2 HOH HOH B . D 2 HOH 2 4 4 HOH HOH B . D 2 HOH 3 5 5 HOH HOH B . D 2 HOH 4 112 10 HOH HOH B . D 2 HOH 5 113 113 HOH HOH B . D 2 HOH 6 114 114 HOH HOH B . D 2 HOH 7 115 11 HOH HOH B . D 2 HOH 8 116 12 HOH HOH B . D 2 HOH 9 117 117 HOH HOH B . D 2 HOH 10 118 118 HOH HOH B . D 2 HOH 11 119 16 HOH HOH B . D 2 HOH 12 120 18 HOH HOH B . D 2 HOH 13 121 19 HOH HOH B . D 2 HOH 14 122 122 HOH HOH B . D 2 HOH 15 123 20 HOH HOH B . D 2 HOH 16 124 124 HOH HOH B . D 2 HOH 17 125 21 HOH HOH B . D 2 HOH 18 126 126 HOH HOH B . D 2 HOH 19 127 23 HOH HOH B . D 2 HOH 20 128 128 HOH HOH B . D 2 HOH 21 129 129 HOH HOH B . D 2 HOH 22 130 28 HOH HOH B . D 2 HOH 23 131 29 HOH HOH B . D 2 HOH 24 132 132 HOH HOH B . D 2 HOH 25 133 30 HOH HOH B . D 2 HOH 26 134 31 HOH HOH B . D 2 HOH 27 135 32 HOH HOH B . D 2 HOH 28 136 41 HOH HOH B . D 2 HOH 29 137 137 HOH HOH B . D 2 HOH 30 138 42 HOH HOH B . D 2 HOH 31 139 43 HOH HOH B . D 2 HOH 32 140 44 HOH HOH B . D 2 HOH 33 141 141 HOH HOH B . D 2 HOH 34 142 45 HOH HOH B . D 2 HOH 35 143 46 HOH HOH B . D 2 HOH 36 144 47 HOH HOH B . D 2 HOH 37 145 145 HOH HOH B . D 2 HOH 38 146 48 HOH HOH B . D 2 HOH 39 147 147 HOH HOH B . D 2 HOH 40 148 51 HOH HOH B . D 2 HOH 41 149 149 HOH HOH B . D 2 HOH 42 150 150 HOH HOH B . D 2 HOH 43 151 52 HOH HOH B . D 2 HOH 44 152 152 HOH HOH B . D 2 HOH 45 153 153 HOH HOH B . D 2 HOH 46 154 53 HOH HOH B . D 2 HOH 47 155 55 HOH HOH B . D 2 HOH 48 156 58 HOH HOH B . D 2 HOH 49 157 60 HOH HOH B . D 2 HOH 50 158 61 HOH HOH B . D 2 HOH 51 159 62 HOH HOH B . D 2 HOH 52 160 64 HOH HOH B . D 2 HOH 53 161 66 HOH HOH B . D 2 HOH 54 162 70 HOH HOH B . D 2 HOH 55 163 163 HOH HOH B . D 2 HOH 56 164 74 HOH HOH B . D 2 HOH 57 165 79 HOH HOH B . D 2 HOH 58 166 80 HOH HOH B . D 2 HOH 59 167 167 HOH HOH B . D 2 HOH 60 168 168 HOH HOH B . D 2 HOH 61 169 169 HOH HOH B . D 2 HOH 62 170 170 HOH HOH B . D 2 HOH 63 171 81 HOH HOH B . D 2 HOH 64 172 172 HOH HOH B . D 2 HOH 65 173 82 HOH HOH B . D 2 HOH 66 174 174 HOH HOH B . D 2 HOH 67 175 83 HOH HOH B . D 2 HOH 68 176 176 HOH HOH B . D 2 HOH 69 177 177 HOH HOH B . D 2 HOH 70 178 84 HOH HOH B . D 2 HOH 71 179 179 HOH HOH B . D 2 HOH 72 180 180 HOH HOH B . D 2 HOH 73 181 181 HOH HOH B . D 2 HOH 74 182 85 HOH HOH B . D 2 HOH 75 183 183 HOH HOH B . D 2 HOH 76 184 184 HOH HOH B . D 2 HOH 77 185 185 HOH HOH B . D 2 HOH 78 186 89 HOH HOH B . D 2 HOH 79 187 90 HOH HOH B . D 2 HOH 80 188 188 HOH HOH B . D 2 HOH 81 189 91 HOH HOH B . D 2 HOH 82 190 190 HOH HOH B . D 2 HOH 83 191 94 HOH HOH B . D 2 HOH 84 192 96 HOH HOH B . D 2 HOH 85 193 97 HOH HOH B . D 2 HOH 86 194 99 HOH HOH B . D 2 HOH 87 195 100 HOH HOH B . D 2 HOH 88 196 196 HOH HOH B . D 2 HOH 89 197 104 HOH HOH B . D 2 HOH 90 198 108 HOH HOH B . D 2 HOH 91 199 111 HOH HOH B . D 2 HOH 92 201 201 HOH HOH B . D 2 HOH 93 202 202 HOH HOH B . D 2 HOH 94 204 204 HOH HOH B . D 2 HOH 95 205 205 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 1 2 B,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1310 ? 1 MORE -4 ? 1 'SSA (A^2)' 12230 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+3/2,-y,z+1/2 -1.0000000000 0.0000000000 0.0000000000 53.4060000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 55.5275000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-08-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 32.3980 -3.2210 90.9620 0.1521 0.1919 0.2201 0.0003 0.0045 0.0101 0.5701 1.1013 1.5369 -0.0877 0.8374 -0.3681 -0.0239 0.1568 0.0893 0.0808 -0.0457 -0.0716 -0.0463 0.1046 0.0696 'X-RAY DIFFRACTION' 2 ? refined 26.3770 -3.9300 89.7560 0.1558 0.1902 0.2016 -0.0039 0.0130 0.0115 1.1115 1.2121 1.3843 -0.4334 1.1835 -0.1307 -0.0652 0.0292 0.0793 0.0396 0.0446 0.0933 0.0342 0.0024 0.0205 'X-RAY DIFFRACTION' 3 ? refined 20.5060 8.3450 82.6640 0.1646 0.1994 0.2622 -0.0330 -0.0120 -0.0441 -0.4222 1.0958 5.8104 -1.3470 -1.1809 -2.7093 -0.1824 0.0113 -0.1405 0.0494 0.3593 0.2417 -0.5712 -0.0321 -0.1769 'X-RAY DIFFRACTION' 4 ? refined 30.7470 7.6140 62.2800 0.2303 0.2089 0.1876 -0.0140 -0.0745 -0.0152 1.1069 2.4873 0.6313 1.9538 1.0905 1.3113 -0.1083 0.0600 0.2139 -0.1645 0.0182 0.2481 -0.0953 0.1864 0.0901 'X-RAY DIFFRACTION' 5 ? refined 22.7250 3.3160 63.4720 0.3850 0.0348 0.3360 0.0763 -0.1314 -0.1263 2.2263 0.3615 3.2109 2.8643 3.5969 3.0369 -0.4213 -0.3222 0.7078 -0.3695 -0.3885 0.6122 0.1411 -0.1253 0.8099 'X-RAY DIFFRACTION' 6 ? refined 22.0200 -0.9950 58.0290 0.2279 0.1784 0.2333 -0.0189 -0.0421 -0.0101 -0.1002 0.4931 0.5351 -0.1122 -0.2516 0.6674 0.0188 -0.0009 0.0242 0.0855 -0.0780 0.1339 0.1381 0.0632 0.0592 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 6 ? ? A 40 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 41 ? ? A 92 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 93 ? ? A 111 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 6 ? ? B 25 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 26 ? ? B 67 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 68 ? ? B 111 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3NGH _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'MOUSE SR-BI PROTEIN AS IN UNP ENTRY Q61009, RESIDUES 505-509' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 8 ? ? CZ A ARG 8 ? ? NH1 A ARG 8 ? ? 123.36 120.30 3.06 0.50 N 2 1 NE A ARG 8 ? ? CZ A ARG 8 ? ? NH2 A ARG 8 ? ? 116.88 120.30 -3.42 0.50 N 3 1 NE B ARG 8 ? ? CZ B ARG 8 ? ? NH2 B ARG 8 ? ? 117.09 120.30 -3.21 0.50 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 PHE N N N N 230 PHE CA C N S 231 PHE C C N N 232 PHE O O N N 233 PHE CB C N N 234 PHE CG C Y N 235 PHE CD1 C Y N 236 PHE CD2 C Y N 237 PHE CE1 C Y N 238 PHE CE2 C Y N 239 PHE CZ C Y N 240 PHE OXT O N N 241 PHE H H N N 242 PHE H2 H N N 243 PHE HA H N N 244 PHE HB2 H N N 245 PHE HB3 H N N 246 PHE HD1 H N N 247 PHE HD2 H N N 248 PHE HE1 H N N 249 PHE HE2 H N N 250 PHE HZ H N N 251 PHE HXT H N N 252 PRO N N N N 253 PRO CA C N S 254 PRO C C N N 255 PRO O O N N 256 PRO CB C N N 257 PRO CG C N N 258 PRO CD C N N 259 PRO OXT O N N 260 PRO H H N N 261 PRO HA H N N 262 PRO HB2 H N N 263 PRO HB3 H N N 264 PRO HG2 H N N 265 PRO HG3 H N N 266 PRO HD2 H N N 267 PRO HD3 H N N 268 PRO HXT H N N 269 SER N N N N 270 SER CA C N S 271 SER C C N N 272 SER O O N N 273 SER CB C N N 274 SER OG O N N 275 SER OXT O N N 276 SER H H N N 277 SER H2 H N N 278 SER HA H N N 279 SER HB2 H N N 280 SER HB3 H N N 281 SER HG H N N 282 SER HXT H N N 283 THR N N N N 284 THR CA C N S 285 THR C C N N 286 THR O O N N 287 THR CB C N R 288 THR OG1 O N N 289 THR CG2 C N N 290 THR OXT O N N 291 THR H H N N 292 THR H2 H N N 293 THR HA H N N 294 THR HB H N N 295 THR HG1 H N N 296 THR HG21 H N N 297 THR HG22 H N N 298 THR HG23 H N N 299 THR HXT H N N 300 TYR N N N N 301 TYR CA C N S 302 TYR C C N N 303 TYR O O N N 304 TYR CB C N N 305 TYR CG C Y N 306 TYR CD1 C Y N 307 TYR CD2 C Y N 308 TYR CE1 C Y N 309 TYR CE2 C Y N 310 TYR CZ C Y N 311 TYR OH O N N 312 TYR OXT O N N 313 TYR H H N N 314 TYR H2 H N N 315 TYR HA H N N 316 TYR HB2 H N N 317 TYR HB3 H N N 318 TYR HD1 H N N 319 TYR HD2 H N N 320 TYR HE1 H N N 321 TYR HE2 H N N 322 TYR HH H N N 323 TYR HXT H N N 324 VAL N N N N 325 VAL CA C N S 326 VAL C C N N 327 VAL O O N N 328 VAL CB C N N 329 VAL CG1 C N N 330 VAL CG2 C N N 331 VAL OXT O N N 332 VAL H H N N 333 VAL H2 H N N 334 VAL HA H N N 335 VAL HB H N N 336 VAL HG11 H N N 337 VAL HG12 H N N 338 VAL HG13 H N N 339 VAL HG21 H N N 340 VAL HG22 H N N 341 VAL HG23 H N N 342 VAL HXT H N N 343 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 PHE N CA sing N N 218 PHE N H sing N N 219 PHE N H2 sing N N 220 PHE CA C sing N N 221 PHE CA CB sing N N 222 PHE CA HA sing N N 223 PHE C O doub N N 224 PHE C OXT sing N N 225 PHE CB CG sing N N 226 PHE CB HB2 sing N N 227 PHE CB HB3 sing N N 228 PHE CG CD1 doub Y N 229 PHE CG CD2 sing Y N 230 PHE CD1 CE1 sing Y N 231 PHE CD1 HD1 sing N N 232 PHE CD2 CE2 doub Y N 233 PHE CD2 HD2 sing N N 234 PHE CE1 CZ doub Y N 235 PHE CE1 HE1 sing N N 236 PHE CE2 CZ sing Y N 237 PHE CE2 HE2 sing N N 238 PHE CZ HZ sing N N 239 PHE OXT HXT sing N N 240 PRO N CA sing N N 241 PRO N CD sing N N 242 PRO N H sing N N 243 PRO CA C sing N N 244 PRO CA CB sing N N 245 PRO CA HA sing N N 246 PRO C O doub N N 247 PRO C OXT sing N N 248 PRO CB CG sing N N 249 PRO CB HB2 sing N N 250 PRO CB HB3 sing N N 251 PRO CG CD sing N N 252 PRO CG HG2 sing N N 253 PRO CG HG3 sing N N 254 PRO CD HD2 sing N N 255 PRO CD HD3 sing N N 256 PRO OXT HXT sing N N 257 SER N CA sing N N 258 SER N H sing N N 259 SER N H2 sing N N 260 SER CA C sing N N 261 SER CA CB sing N N 262 SER CA HA sing N N 263 SER C O doub N N 264 SER C OXT sing N N 265 SER CB OG sing N N 266 SER CB HB2 sing N N 267 SER CB HB3 sing N N 268 SER OG HG sing N N 269 SER OXT HXT sing N N 270 THR N CA sing N N 271 THR N H sing N N 272 THR N H2 sing N N 273 THR CA C sing N N 274 THR CA CB sing N N 275 THR CA HA sing N N 276 THR C O doub N N 277 THR C OXT sing N N 278 THR CB OG1 sing N N 279 THR CB CG2 sing N N 280 THR CB HB sing N N 281 THR OG1 HG1 sing N N 282 THR CG2 HG21 sing N N 283 THR CG2 HG22 sing N N 284 THR CG2 HG23 sing N N 285 THR OXT HXT sing N N 286 TYR N CA sing N N 287 TYR N H sing N N 288 TYR N H2 sing N N 289 TYR CA C sing N N 290 TYR CA CB sing N N 291 TYR CA HA sing N N 292 TYR C O doub N N 293 TYR C OXT sing N N 294 TYR CB CG sing N N 295 TYR CB HB2 sing N N 296 TYR CB HB3 sing N N 297 TYR CG CD1 doub Y N 298 TYR CG CD2 sing Y N 299 TYR CD1 CE1 sing Y N 300 TYR CD1 HD1 sing N N 301 TYR CD2 CE2 doub Y N 302 TYR CD2 HD2 sing N N 303 TYR CE1 CZ doub Y N 304 TYR CE1 HE1 sing N N 305 TYR CE2 CZ sing Y N 306 TYR CE2 HE2 sing N N 307 TYR CZ OH sing N N 308 TYR OH HH sing N N 309 TYR OXT HXT sing N N 310 VAL N CA sing N N 311 VAL N H sing N N 312 VAL N H2 sing N N 313 VAL CA C sing N N 314 VAL CA CB sing N N 315 VAL CA HA sing N N 316 VAL C O doub N N 317 VAL C OXT sing N N 318 VAL CB CG1 sing N N 319 VAL CB CG2 sing N N 320 VAL CB HB sing N N 321 VAL CG1 HG11 sing N N 322 VAL CG1 HG12 sing N N 323 VAL CG1 HG13 sing N N 324 VAL CG2 HG21 sing N N 325 VAL CG2 HG22 sing N N 326 VAL CG2 HG23 sing N N 327 VAL OXT HXT sing N N 328 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2EDZ _pdbx_initial_refinement_model.details ? #