HEADER SIGNALING PROTEIN 11-JUN-10 3NGH TITLE MOLECULAR ANALYSIS OF THE INTERACTION OF THE HDL RECEPTOR SR-BI WITH TITLE 2 THE ADAPTOR PROTEIN PDZK1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PDZ DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 7-106; COMPND 5 SYNONYM: NHERF-3, NA(+)/H(+) EXCHANGE REGULATORY COFACTOR NHE-RF3, COMPND 6 CFTR-ASSOCIATED PROTEIN OF 70 KDA, NA/PI COTRANSPORTER C-TERMINAL- COMPND 7 ASSOCIATED PROTEIN 1, NAPI-CAP1, SODIUM-HYDROGEN EXCHANGER REGULATORY COMPND 8 FACTOR 3, NA(+)/H(+) EXCHANGER REGULATORY FACTOR 3; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CAP70, NHERF3, PDZK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAL-C2X KEYWDS PDZ DOMAIN, ADAPTOR PROTEIN, SR-BI, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.KOCHER,G.BIRRANE,M.KRIEGER,J.A.LADIAS REVDAT 3 06-SEP-23 3NGH 1 SEQADV REVDAT 2 26-JAN-11 3NGH 1 JRNL REVDAT 1 25-AUG-10 3NGH 0 JRNL AUTH O.KOCHER,G.BIRRANE,K.TSUKAMOTO,S.FENSKE,A.YESILALTAY,R.PAL, JRNL AUTH 2 K.DANIELS,J.A.LADIAS,M.KRIEGER JRNL TITL IN VITRO AND IN VIVO ANALYSIS OF THE BINDING OF THE C JRNL TITL 2 TERMINUS OF THE HDL RECEPTOR SCAVENGER RECEPTOR CLASS B, JRNL TITL 3 TYPE I (SR-BI), TO THE PDZ1 DOMAIN OF ITS ADAPTOR PROTEIN JRNL TITL 4 PDZK1. JRNL REF J.BIOL.CHEM. V. 285 34999 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20739281 JRNL DOI 10.1074/JBC.M110.164418 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 19752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1396 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1666 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.595 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1722 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1217 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2315 ; 1.851 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2987 ; 0.967 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 6.209 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;44.405 ;25.506 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 345 ;15.274 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.297 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 257 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1935 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 318 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1062 ; 1.100 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 444 ; 0.335 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1705 ; 1.887 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 660 ; 2.900 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 606 ; 4.677 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3980 -3.2210 90.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.1521 T22: 0.1919 REMARK 3 T33: 0.2201 T12: 0.0003 REMARK 3 T13: 0.0045 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.5701 L22: 1.1013 REMARK 3 L33: 1.5369 L12: -0.0877 REMARK 3 L13: 0.8374 L23: -0.3681 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: 0.1568 S13: 0.0893 REMARK 3 S21: 0.0808 S22: -0.0457 S23: -0.0716 REMARK 3 S31: -0.0463 S32: 0.1046 S33: 0.0696 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3770 -3.9300 89.7560 REMARK 3 T TENSOR REMARK 3 T11: 0.1558 T22: 0.1902 REMARK 3 T33: 0.2016 T12: -0.0039 REMARK 3 T13: 0.0130 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.1115 L22: 1.2121 REMARK 3 L33: 1.3843 L12: -0.4334 REMARK 3 L13: 1.1835 L23: -0.1307 REMARK 3 S TENSOR REMARK 3 S11: -0.0652 S12: 0.0292 S13: 0.0793 REMARK 3 S21: 0.0396 S22: 0.0446 S23: 0.0933 REMARK 3 S31: 0.0342 S32: 0.0024 S33: 0.0205 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5060 8.3450 82.6640 REMARK 3 T TENSOR REMARK 3 T11: 0.1646 T22: 0.1994 REMARK 3 T33: 0.2622 T12: -0.0330 REMARK 3 T13: -0.0120 T23: -0.0441 REMARK 3 L TENSOR REMARK 3 L11: -0.4222 L22: 1.0958 REMARK 3 L33: 5.8104 L12: -1.3470 REMARK 3 L13: -1.1809 L23: -2.7093 REMARK 3 S TENSOR REMARK 3 S11: -0.1824 S12: 0.0113 S13: -0.1405 REMARK 3 S21: 0.0494 S22: 0.3593 S23: 0.2417 REMARK 3 S31: -0.5712 S32: -0.0321 S33: -0.1769 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 25 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7470 7.6140 62.2800 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: 0.2089 REMARK 3 T33: 0.1876 T12: -0.0140 REMARK 3 T13: -0.0745 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.1069 L22: 2.4873 REMARK 3 L33: 0.6313 L12: 1.9538 REMARK 3 L13: 1.0905 L23: 1.3113 REMARK 3 S TENSOR REMARK 3 S11: -0.1083 S12: 0.0600 S13: 0.2139 REMARK 3 S21: -0.1645 S22: 0.0182 S23: 0.2481 REMARK 3 S31: -0.0953 S32: 0.1864 S33: 0.0901 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 67 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7250 3.3160 63.4720 REMARK 3 T TENSOR REMARK 3 T11: 0.3850 T22: 0.0348 REMARK 3 T33: 0.3360 T12: 0.0763 REMARK 3 T13: -0.1314 T23: -0.1263 REMARK 3 L TENSOR REMARK 3 L11: 2.2263 L22: 0.3615 REMARK 3 L33: 3.2109 L12: 2.8643 REMARK 3 L13: 3.5969 L23: 3.0369 REMARK 3 S TENSOR REMARK 3 S11: -0.4213 S12: -0.3222 S13: 0.7078 REMARK 3 S21: -0.3695 S22: -0.3885 S23: 0.6122 REMARK 3 S31: 0.1411 S32: -0.1253 S33: 0.8099 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 68 B 111 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0200 -0.9950 58.0290 REMARK 3 T TENSOR REMARK 3 T11: 0.2279 T22: 0.1784 REMARK 3 T33: 0.2333 T12: -0.0189 REMARK 3 T13: -0.0421 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: -0.1002 L22: 0.4931 REMARK 3 L33: 0.5351 L12: -0.1122 REMARK 3 L13: -0.2516 L23: 0.6674 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: -0.0009 S13: 0.0242 REMARK 3 S21: 0.0855 S22: -0.0780 S23: 0.1339 REMARK 3 S31: 0.1381 S32: 0.0632 S33: 0.0592 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059798. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26518 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.48800 REMARK 200 R SYM (I) : 0.54500 REMARK 200 FOR THE DATA SET : 41.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.05500 REMARK 200 R SYM FOR SHELL (I) : 0.05600 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2EDZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS/HCL, 40% PEG 200, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.80200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.52750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.55700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.52750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.80200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.55700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 53.40600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 55.52750 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 8 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 8 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EDZ RELATED DB: PDB REMARK 900 NMR STRUCTURE OF MOUSE PDZK1 PDZ1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 MOUSE SR-BI PROTEIN AS IN UNP ENTRY Q61009, RESIDUES 505-509 DBREF 3NGH A 7 106 UNP Q9JIL4 NHRF3_MOUSE 7 106 DBREF 3NGH B 7 106 UNP Q9JIL4 NHRF3_MOUSE 7 106 SEQADV 3NGH GLY A 6 UNP Q9JIL4 EXPRESSION TAG SEQADV 3NGH SER A 10 UNP Q9JIL4 CYS 10 ENGINEERED MUTATION SEQADV 3NGH GLN A 107 UNP Q9JIL4 SEE REMARK 999 SEQADV 3NGH GLU A 108 UNP Q9JIL4 SEE REMARK 999 SEQADV 3NGH ALA A 109 UNP Q9JIL4 SEE REMARK 999 SEQADV 3NGH LYS A 110 UNP Q9JIL4 SEE REMARK 999 SEQADV 3NGH LEU A 111 UNP Q9JIL4 SEE REMARK 999 SEQADV 3NGH GLY B 6 UNP Q9JIL4 EXPRESSION TAG SEQADV 3NGH SER B 10 UNP Q9JIL4 CYS 10 ENGINEERED MUTATION SEQADV 3NGH GLN B 107 UNP Q9JIL4 SEE REMARK 999 SEQADV 3NGH GLU B 108 UNP Q9JIL4 SEE REMARK 999 SEQADV 3NGH ALA B 109 UNP Q9JIL4 SEE REMARK 999 SEQADV 3NGH LYS B 110 UNP Q9JIL4 SEE REMARK 999 SEQADV 3NGH LEU B 111 UNP Q9JIL4 SEE REMARK 999 SEQRES 1 A 106 GLY PRO ARG GLU SER LYS LEU SER LYS GLN GLU GLY GLN SEQRES 2 A 106 ASN TYR GLY PHE PHE LEU ARG ILE GLU LYS ASP THR ASP SEQRES 3 A 106 GLY HIS LEU ILE ARG VAL ILE GLU GLU GLY SER PRO ALA SEQRES 4 A 106 GLU LYS ALA GLY LEU LEU ASP GLY ASP ARG VAL LEU ARG SEQRES 5 A 106 ILE ASN GLY VAL PHE VAL ASP LYS GLU GLU HIS ALA GLN SEQRES 6 A 106 VAL VAL GLU LEU VAL ARG LYS SER GLY ASN SER VAL THR SEQRES 7 A 106 LEU LEU VAL LEU ASP GLY ASP SER TYR GLU LYS ALA VAL SEQRES 8 A 106 LYS ASN GLN VAL ASP LEU LYS GLU LEU ASP GLN GLU ALA SEQRES 9 A 106 LYS LEU SEQRES 1 B 106 GLY PRO ARG GLU SER LYS LEU SER LYS GLN GLU GLY GLN SEQRES 2 B 106 ASN TYR GLY PHE PHE LEU ARG ILE GLU LYS ASP THR ASP SEQRES 3 B 106 GLY HIS LEU ILE ARG VAL ILE GLU GLU GLY SER PRO ALA SEQRES 4 B 106 GLU LYS ALA GLY LEU LEU ASP GLY ASP ARG VAL LEU ARG SEQRES 5 B 106 ILE ASN GLY VAL PHE VAL ASP LYS GLU GLU HIS ALA GLN SEQRES 6 B 106 VAL VAL GLU LEU VAL ARG LYS SER GLY ASN SER VAL THR SEQRES 7 B 106 LEU LEU VAL LEU ASP GLY ASP SER TYR GLU LYS ALA VAL SEQRES 8 B 106 LYS ASN GLN VAL ASP LEU LYS GLU LEU ASP GLN GLU ALA SEQRES 9 B 106 LYS LEU FORMUL 3 HOH *187(H2 O) HELIX 1 1 SER A 42 ALA A 47 1 6 HELIX 2 2 GLU A 67 SER A 78 1 12 HELIX 3 3 ASP A 88 ASN A 98 1 11 HELIX 4 4 ASP A 101 LEU A 105 5 5 HELIX 5 5 SER B 42 GLY B 48 1 7 HELIX 6 6 GLU B 67 SER B 78 1 12 HELIX 7 7 ASP B 88 ASN B 98 1 11 HELIX 8 8 ASP B 101 LEU B 105 5 5 SHEET 1 A 4 ARG A 8 SER A 13 0 SHEET 2 A 4 SER A 81 LEU A 87 -1 O LEU A 84 N SER A 10 SHEET 3 A 4 ARG A 54 ILE A 58 -1 N LEU A 56 O LEU A 85 SHEET 4 A 4 VAL A 61 PHE A 62 -1 O VAL A 61 N ILE A 58 SHEET 1 B 2 PHE A 23 ARG A 25 0 SHEET 2 B 2 LEU A 34 ARG A 36 -1 O ARG A 36 N PHE A 23 SHEET 1 C 3 GLU A 108 LYS A 110 0 SHEET 2 C 3 PHE B 23 ARG B 25 -1 O LEU B 24 N ALA A 109 SHEET 3 C 3 LEU B 34 ARG B 36 -1 O ARG B 36 N PHE B 23 SHEET 1 D 4 ARG B 8 SER B 13 0 SHEET 2 D 4 SER B 81 LEU B 87 -1 O LEU B 84 N SER B 10 SHEET 3 D 4 ARG B 54 ILE B 58 -1 N LEU B 56 O LEU B 85 SHEET 4 D 4 VAL B 61 PHE B 62 -1 O VAL B 61 N ILE B 58 CRYST1 35.604 55.114 111.055 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028087 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009005 0.00000