HEADER TRANSCRIPTION REGULATOR 15-JUN-10 3NI7 TITLE CRYSTAL STRUCTURE OF THE TETR TRANSCRIPTIONAL REGULATOR FROM TITLE 2 NITROSOMONAS EUROPAEA ATCC 19718 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIAL REGULATORY PROTEINS, TETR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA; SOURCE 3 ORGANISM_TAXID: 915; SOURCE 4 GENE: NE0300; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 GOLD MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS TETR, TRANSCRIPTIONAL REGULATOR, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR A.KNAPIK,M.CHRUSZCZ,M.CYMBOROWSKI,X.XU,A.SAVCHENKO,A.EDWARDS, AUTHOR 2 A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-APR-22 3NI7 1 AUTHOR JRNL SEQADV LINK REVDAT 2 20-JUN-12 3NI7 1 JRNL VERSN REVDAT 1 11-AUG-10 3NI7 0 JRNL AUTH A.KNAPIK,M.CHRUSZCZ,M.CYMBOROWSKI,X.XU,A.SAVCHENKO, JRNL AUTH 2 A.EDWARDS,A.JOACHIMIAK,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF THE TETR TRANSCRIPTIONAL REGULATOR FROM JRNL TITL 2 NITROSOMONAS EUROPAEA ATCC 19718 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 12223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 590 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 797 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3610 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2727 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.319 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.382 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.466 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 55.820 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2787 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1829 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3781 ; 1.637 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4408 ; 4.169 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 343 ; 4.627 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;31.440 ;22.377 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 468 ;17.873 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.219 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 444 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3073 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 613 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1735 ; 0.683 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 691 ; 0.903 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2763 ; 1.334 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1052 ; 2.834 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1018 ; 4.349 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 6 A 190 1 REMARK 3 1 B 6 B 190 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2187 ; 0.24 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 2187 ; 0.30 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5380 43.6430 47.3950 REMARK 3 T TENSOR REMARK 3 T11: 1.5228 T22: 0.2404 REMARK 3 T33: 0.5188 T12: 0.0167 REMARK 3 T13: -0.1687 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 6.0537 L22: 11.8113 REMARK 3 L33: 8.3818 L12: 1.7979 REMARK 3 L13: -3.0158 L23: -1.7150 REMARK 3 S TENSOR REMARK 3 S11: 0.4026 S12: 0.3088 S13: 0.0789 REMARK 3 S21: 0.7215 S22: -0.1885 S23: 0.7955 REMARK 3 S31: -0.5676 S32: 0.3664 S33: -0.2141 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 40.0380 23.4950 33.5220 REMARK 3 T TENSOR REMARK 3 T11: 1.4670 T22: 0.2193 REMARK 3 T33: 0.7130 T12: 0.0435 REMARK 3 T13: -0.2290 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.3407 L22: 11.3378 REMARK 3 L33: 6.2745 L12: 0.1393 REMARK 3 L13: 0.2821 L23: 2.3940 REMARK 3 S TENSOR REMARK 3 S11: -0.1447 S12: -0.0142 S13: -0.0749 REMARK 3 S21: 0.0042 S22: -0.0520 S23: 0.4358 REMARK 3 S31: -0.0667 S32: 0.0760 S33: 0.1968 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9180 -0.0080 31.4010 REMARK 3 T TENSOR REMARK 3 T11: 1.5226 T22: 0.2505 REMARK 3 T33: 0.5748 T12: 0.0301 REMARK 3 T13: -0.0908 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 7.6673 L22: 14.1276 REMARK 3 L33: 11.1391 L12: 0.3850 REMARK 3 L13: -1.1127 L23: 3.1183 REMARK 3 S TENSOR REMARK 3 S11: -0.0812 S12: 0.6464 S13: -0.0224 REMARK 3 S21: 0.7394 S22: -0.2544 S23: 0.6559 REMARK 3 S31: 0.2708 S32: -0.3381 S33: 0.3357 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 188 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9490 20.6440 23.3360 REMARK 3 T TENSOR REMARK 3 T11: 1.6899 T22: 0.2336 REMARK 3 T33: 0.6267 T12: 0.0295 REMARK 3 T13: -0.2679 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 4.6808 L22: 12.6013 REMARK 3 L33: 2.5982 L12: 2.9765 REMARK 3 L13: -2.3792 L23: -1.4834 REMARK 3 S TENSOR REMARK 3 S11: 0.0703 S12: 0.1230 S13: -0.0551 REMARK 3 S21: 0.8549 S22: 0.0858 S23: -0.2017 REMARK 3 S31: -0.1911 S32: -0.1052 S33: -0.1561 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3NI7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12269 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : 0.12200 REMARK 200 FOR THE DATA SET : 19.7970 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.70800 REMARK 200 R SYM FOR SHELL (I) : 0.70800 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, RESOLVE, BUCCANEER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 0.65M MGFORMATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.11100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.03950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.68900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.03950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.11100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.68900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ILE A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 PHE A 112 REMARK 465 GLY A 113 REMARK 465 ASP A 139 REMARK 465 ALA A 140 REMARK 465 THR A 141 REMARK 465 PHE A 142 REMARK 465 MSE A 143 REMARK 465 ARG A 144 REMARK 465 ARG A 145 REMARK 465 GLY A 189 REMARK 465 GLN A 190 REMARK 465 LYS A 191 REMARK 465 VAL A 192 REMARK 465 TYR A 193 REMARK 465 GLY A 194 REMARK 465 LYS A 195 REMARK 465 ASP A 196 REMARK 465 PRO A 197 REMARK 465 GLU A 198 REMARK 465 LYS A 199 REMARK 465 SER A 200 REMARK 465 THR A 201 REMARK 465 VAL A 202 REMARK 465 PRO A 203 REMARK 465 HIS A 204 REMARK 465 LYS A 205 REMARK 465 GLN A 206 REMARK 465 GLN A 207 REMARK 465 ILE A 208 REMARK 465 PRO A 209 REMARK 465 LEU A 210 REMARK 465 GLN A 211 REMARK 465 PHE A 212 REMARK 465 ASP A 213 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 ILE B 3 REMARK 465 ASN B 4 REMARK 465 ASN B 5 REMARK 465 PHE B 112 REMARK 465 GLY B 113 REMARK 465 ASP B 139 REMARK 465 ALA B 140 REMARK 465 THR B 141 REMARK 465 PHE B 142 REMARK 465 MSE B 143 REMARK 465 ARG B 144 REMARK 465 ARG B 145 REMARK 465 ALA B 146 REMARK 465 GLY B 189 REMARK 465 GLN B 190 REMARK 465 LYS B 191 REMARK 465 VAL B 192 REMARK 465 TYR B 193 REMARK 465 GLY B 194 REMARK 465 LYS B 195 REMARK 465 ASP B 196 REMARK 465 PRO B 197 REMARK 465 GLU B 198 REMARK 465 LYS B 199 REMARK 465 SER B 200 REMARK 465 THR B 201 REMARK 465 VAL B 202 REMARK 465 PRO B 203 REMARK 465 HIS B 204 REMARK 465 LYS B 205 REMARK 465 GLN B 206 REMARK 465 GLN B 207 REMARK 465 ILE B 208 REMARK 465 PRO B 209 REMARK 465 LEU B 210 REMARK 465 GLN B 211 REMARK 465 PHE B 212 REMARK 465 ASP B 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 9 CZ NH1 NH2 REMARK 470 TYR A 31 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LEU A 76 CG CD1 CD2 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 HIS A 114 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 115 CG1 CG2 CD1 REMARK 470 HIS A 116 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 117 CG1 CG2 CD1 REMARK 470 GLN A 118 CG CD OE1 NE2 REMARK 470 GLN A 137 CG CD OE1 NE2 REMARK 470 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 179 CE NZ REMARK 470 ASP B 6 N CB CG OD1 OD2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 GLU B 26 CG CD OE1 OE2 REMARK 470 ARG B 29 CZ NH1 NH2 REMARK 470 ARG B 65 NE CZ NH1 NH2 REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 GLU B 82 CD OE1 OE2 REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 HIS B 114 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 115 CG1 CG2 CD1 REMARK 470 HIS B 116 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 117 CG1 CG2 CD1 REMARK 470 GLN B 118 CG CD OE1 NE2 REMARK 470 ARG B 127 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 133 CZ NH1 NH2 REMARK 470 GLU B 134 CG CD OE1 OE2 REMARK 470 ARG B 138 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 172 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 176 CG CD OE1 NE2 REMARK 470 LYS B 179 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 23 -90.11 -115.67 REMARK 500 THR B 23 -90.02 -114.22 REMARK 500 ASN B 170 15.36 57.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5892 RELATED DB: TARGETDB DBREF 3NI7 A 2 213 UNP Q82XH4 Q82XH4_NITEU 2 213 DBREF 3NI7 B 2 213 UNP Q82XH4 Q82XH4_NITEU 2 213 SEQADV 3NI7 MSE A 1 UNP Q82XH4 INITIATING METHIONINE SEQADV 3NI7 MSE B 1 UNP Q82XH4 INITIATING METHIONINE SEQRES 1 A 213 MSE THR ILE ASN ASN ASP PRO MSE ARG ASP ALA ILE VAL SEQRES 2 A 213 ASP THR ALA VAL GLU LEU ALA ALA HIS THR SER TRP GLU SEQRES 3 A 213 ALA VAL ARG LEU TYR ASP ILE ALA ALA ARG LEU ALA VAL SEQRES 4 A 213 SER LEU ASP GLU ILE ARG LEU TYR PHE ARG GLU LYS ASP SEQRES 5 A 213 GLU LEU ILE ASP ALA TRP PHE ASP ARG ALA ASP SER ARG SEQRES 6 A 213 MSE LEU LYS GLU ALA GLU SER ALA GLY PHE LEU ASP LEU SEQRES 7 A 213 VAL ALA SER GLU ARG ILE HIS HIS LEU ILE MSE ILE TRP SEQRES 8 A 213 LEU ASP ALA LEU ALA VAL GLN ARG LYS VAL THR ARG GLN SEQRES 9 A 213 MSE ILE MSE SER LYS LEU GLU PHE GLY HIS ILE HIS ILE SEQRES 10 A 213 GLN ILE PRO ALA VAL MSE ARG VAL SER ARG THR VAL GLN SEQRES 11 A 213 TRP VAL ARG GLU ALA ALA GLN ARG ASP ALA THR PHE MSE SEQRES 12 A 213 ARG ARG ALA LEU GLU GLU SER THR LEU THR THR ILE TYR SEQRES 13 A 213 LEU MSE THR PHE PHE PHE TRP MSE ARG ASP GLU SER GLU SEQRES 14 A 213 ASN SER ARG HIS THR ARG GLN PHE LEU LYS ARG HIS LEU SEQRES 15 A 213 THR MSE ALA ALA TRP LEU GLY GLN LYS VAL TYR GLY LYS SEQRES 16 A 213 ASP PRO GLU LYS SER THR VAL PRO HIS LYS GLN GLN ILE SEQRES 17 A 213 PRO LEU GLN PHE ASP SEQRES 1 B 213 MSE THR ILE ASN ASN ASP PRO MSE ARG ASP ALA ILE VAL SEQRES 2 B 213 ASP THR ALA VAL GLU LEU ALA ALA HIS THR SER TRP GLU SEQRES 3 B 213 ALA VAL ARG LEU TYR ASP ILE ALA ALA ARG LEU ALA VAL SEQRES 4 B 213 SER LEU ASP GLU ILE ARG LEU TYR PHE ARG GLU LYS ASP SEQRES 5 B 213 GLU LEU ILE ASP ALA TRP PHE ASP ARG ALA ASP SER ARG SEQRES 6 B 213 MSE LEU LYS GLU ALA GLU SER ALA GLY PHE LEU ASP LEU SEQRES 7 B 213 VAL ALA SER GLU ARG ILE HIS HIS LEU ILE MSE ILE TRP SEQRES 8 B 213 LEU ASP ALA LEU ALA VAL GLN ARG LYS VAL THR ARG GLN SEQRES 9 B 213 MSE ILE MSE SER LYS LEU GLU PHE GLY HIS ILE HIS ILE SEQRES 10 B 213 GLN ILE PRO ALA VAL MSE ARG VAL SER ARG THR VAL GLN SEQRES 11 B 213 TRP VAL ARG GLU ALA ALA GLN ARG ASP ALA THR PHE MSE SEQRES 12 B 213 ARG ARG ALA LEU GLU GLU SER THR LEU THR THR ILE TYR SEQRES 13 B 213 LEU MSE THR PHE PHE PHE TRP MSE ARG ASP GLU SER GLU SEQRES 14 B 213 ASN SER ARG HIS THR ARG GLN PHE LEU LYS ARG HIS LEU SEQRES 15 B 213 THR MSE ALA ALA TRP LEU GLY GLN LYS VAL TYR GLY LYS SEQRES 16 B 213 ASP PRO GLU LYS SER THR VAL PRO HIS LYS GLN GLN ILE SEQRES 17 B 213 PRO LEU GLN PHE ASP MODRES 3NI7 MSE A 8 MET SELENOMETHIONINE MODRES 3NI7 MSE A 66 MET SELENOMETHIONINE MODRES 3NI7 MSE A 89 MET SELENOMETHIONINE MODRES 3NI7 MSE A 105 MET SELENOMETHIONINE MODRES 3NI7 MSE A 107 MET SELENOMETHIONINE MODRES 3NI7 MSE A 123 MET SELENOMETHIONINE MODRES 3NI7 MSE A 158 MET SELENOMETHIONINE MODRES 3NI7 MSE A 164 MET SELENOMETHIONINE MODRES 3NI7 MSE A 184 MET SELENOMETHIONINE MODRES 3NI7 MSE B 8 MET SELENOMETHIONINE MODRES 3NI7 MSE B 66 MET SELENOMETHIONINE MODRES 3NI7 MSE B 89 MET SELENOMETHIONINE MODRES 3NI7 MSE B 105 MET SELENOMETHIONINE MODRES 3NI7 MSE B 107 MET SELENOMETHIONINE MODRES 3NI7 MSE B 123 MET SELENOMETHIONINE MODRES 3NI7 MSE B 158 MET SELENOMETHIONINE MODRES 3NI7 MSE B 164 MET SELENOMETHIONINE MODRES 3NI7 MSE B 184 MET SELENOMETHIONINE HET MSE A 8 8 HET MSE A 66 8 HET MSE A 89 8 HET MSE A 105 8 HET MSE A 107 8 HET MSE A 123 8 HET MSE A 158 8 HET MSE A 164 8 HET MSE A 184 16 HET MSE B 8 8 HET MSE B 66 8 HET MSE B 89 8 HET MSE B 105 8 HET MSE B 107 8 HET MSE B 123 8 HET MSE B 158 8 HET MSE B 164 8 HET MSE B 184 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 18(C5 H11 N O2 SE) HELIX 1 1 ASP A 6 THR A 23 1 18 HELIX 2 2 ARG A 29 LEU A 37 1 9 HELIX 3 3 SER A 40 PHE A 48 1 9 HELIX 4 4 GLU A 50 ALA A 70 1 21 HELIX 5 5 GLY A 74 LEU A 78 5 5 HELIX 6 6 VAL A 79 VAL A 97 1 19 HELIX 7 7 GLN A 98 LYS A 109 1 12 HELIX 8 8 HIS A 114 ALA A 136 1 23 HELIX 9 9 GLU A 148 ARG A 165 1 18 HELIX 10 10 SER A 168 ASN A 170 5 3 HELIX 11 11 SER A 171 LEU A 188 1 18 HELIX 12 12 ASP B 6 THR B 23 1 18 HELIX 13 13 ARG B 29 ALA B 38 1 10 HELIX 14 14 SER B 40 PHE B 48 1 9 HELIX 15 15 GLU B 50 GLU B 71 1 22 HELIX 16 16 SER B 72 LEU B 78 1 7 HELIX 17 17 VAL B 79 VAL B 97 1 19 HELIX 18 18 GLN B 98 LYS B 109 1 12 HELIX 19 19 HIS B 114 ALA B 135 1 22 HELIX 20 20 GLU B 148 ARG B 165 1 18 HELIX 21 21 SER B 168 ASN B 170 5 3 HELIX 22 22 SER B 171 LEU B 188 1 18 LINK C PRO A 7 N MSE A 8 1555 1555 1.32 LINK C MSE A 8 N ARG A 9 1555 1555 1.33 LINK C ARG A 65 N MSE A 66 1555 1555 1.31 LINK C MSE A 66 N LEU A 67 1555 1555 1.32 LINK C ILE A 88 N MSE A 89 1555 1555 1.31 LINK C MSE A 89 N ILE A 90 1555 1555 1.34 LINK C GLN A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N ILE A 106 1555 1555 1.34 LINK C ILE A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N SER A 108 1555 1555 1.32 LINK C VAL A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N ARG A 124 1555 1555 1.33 LINK C LEU A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N THR A 159 1555 1555 1.32 LINK C TRP A 163 N MSE A 164 1555 1555 1.32 LINK C MSE A 164 N ARG A 165 1555 1555 1.33 LINK C THR A 183 N AMSE A 184 1555 1555 1.33 LINK C THR A 183 N BMSE A 184 1555 1555 1.33 LINK C AMSE A 184 N ALA A 185 1555 1555 1.33 LINK C BMSE A 184 N ALA A 185 1555 1555 1.33 LINK C PRO B 7 N MSE B 8 1555 1555 1.33 LINK C MSE B 8 N ARG B 9 1555 1555 1.33 LINK C ARG B 65 N MSE B 66 1555 1555 1.32 LINK C MSE B 66 N LEU B 67 1555 1555 1.32 LINK C ILE B 88 N MSE B 89 1555 1555 1.32 LINK C MSE B 89 N ILE B 90 1555 1555 1.33 LINK C GLN B 104 N MSE B 105 1555 1555 1.33 LINK C MSE B 105 N ILE B 106 1555 1555 1.35 LINK C ILE B 106 N MSE B 107 1555 1555 1.33 LINK C MSE B 107 N SER B 108 1555 1555 1.32 LINK C VAL B 122 N MSE B 123 1555 1555 1.36 LINK C MSE B 123 N ARG B 124 1555 1555 1.33 LINK C LEU B 157 N MSE B 158 1555 1555 1.33 LINK C MSE B 158 N THR B 159 1555 1555 1.32 LINK C TRP B 163 N MSE B 164 1555 1555 1.32 LINK C MSE B 164 N ARG B 165 1555 1555 1.33 LINK C THR B 183 N MSE B 184 1555 1555 1.32 LINK C MSE B 184 N ALA B 185 1555 1555 1.32 CRYST1 64.222 75.378 98.079 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015570 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010200 0.00000