data_3NIW # _entry.id 3NIW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3NIW RCSB RCSB059885 WWPDB D_1000059885 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-22060c _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3NIW _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-06-16 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bonanno, J.B.' 1 ? 'Ramagopal, U.' 2 ? 'Toro, R.' 3 ? 'Rutter, M.' 4 ? 'Bain, K.T.' 5 ? 'Wu, B.' 6 ? 'Sauder, J.M.' 7 0000-0002-0254-4955 'Burley, S.K.' 8 0000-0002-2487-9713 'Almo, S.C.' 9 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 10 ? # _citation.id primary _citation.title 'Crystal structure of a haloacid dehalogenase-like hydrolase from Bacteroides thetaiotaomicron' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bonanno, J.B.' 1 ? primary 'Ramagopal, U.' 2 ? primary 'Toro, R.' 3 ? primary 'Rutter, M.' 4 ? primary 'Bain, K.T.' 5 ? primary 'Wu, B.' 6 ? primary 'Sauder, J.M.' 7 ? primary 'Burley, S.K.' 8 0000-0002-2487-9713 primary 'Almo, S.C.' 9 ? # _cell.length_a 43.773 _cell.length_b 72.716 _cell.length_c 82.400 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3NIW _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3NIW _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Haloacid dehalogenase-like hydrolase' 31622.775 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 94 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SLKYKLIVLDLDGTLTNSKKEISSRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELR(MSE)NEFGGFILSYN GGEIINWESKE(MSE)(MSE)YENVLPNEVVPVLYECARTNHLSILTYDGAEIVTENSLDPYVQKEAFLNK(MSE)AIRE TNDFLTDITLPVAKCLIVGDAGKLIPVESELCIRLQGKINVFRSEPYFLELVPQGIDKALSLSVLLENIG(MSE)TREEV IAIGDGYNDLS(MSE)IKFAG(MSE)GVA(MSE)GNAQEPVKKAADYITLTNDEDGVAEAIERIFNVEGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLKYKLIVLDLDGTLTNSKKEISSRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFILSYNGGEIINWE SKEMMYENVLPNEVVPVLYECARTNHLSILTYDGAEIVTENSLDPYVQKEAFLNKMAIRETNDFLTDITLPVAKCLIVGD AGKLIPVESELCIRLQGKINVFRSEPYFLELVPQGIDKALSLSVLLENIGMTREEVIAIGDGYNDLSMIKFAGMGVAMGN AQEPVKKAADYITLTNDEDGVAEAIERIFNVEGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-22060c # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 LEU n 1 4 LYS n 1 5 TYR n 1 6 LYS n 1 7 LEU n 1 8 ILE n 1 9 VAL n 1 10 LEU n 1 11 ASP n 1 12 LEU n 1 13 ASP n 1 14 GLY n 1 15 THR n 1 16 LEU n 1 17 THR n 1 18 ASN n 1 19 SER n 1 20 LYS n 1 21 LYS n 1 22 GLU n 1 23 ILE n 1 24 SER n 1 25 SER n 1 26 ARG n 1 27 ASN n 1 28 ARG n 1 29 GLU n 1 30 THR n 1 31 LEU n 1 32 ILE n 1 33 ARG n 1 34 ILE n 1 35 GLN n 1 36 GLU n 1 37 GLN n 1 38 GLY n 1 39 ILE n 1 40 ARG n 1 41 LEU n 1 42 VAL n 1 43 LEU n 1 44 ALA n 1 45 SER n 1 46 GLY n 1 47 ARG n 1 48 PRO n 1 49 THR n 1 50 TYR n 1 51 GLY n 1 52 ILE n 1 53 VAL n 1 54 PRO n 1 55 LEU n 1 56 ALA n 1 57 ASN n 1 58 GLU n 1 59 LEU n 1 60 ARG n 1 61 MSE n 1 62 ASN n 1 63 GLU n 1 64 PHE n 1 65 GLY n 1 66 GLY n 1 67 PHE n 1 68 ILE n 1 69 LEU n 1 70 SER n 1 71 TYR n 1 72 ASN n 1 73 GLY n 1 74 GLY n 1 75 GLU n 1 76 ILE n 1 77 ILE n 1 78 ASN n 1 79 TRP n 1 80 GLU n 1 81 SER n 1 82 LYS n 1 83 GLU n 1 84 MSE n 1 85 MSE n 1 86 TYR n 1 87 GLU n 1 88 ASN n 1 89 VAL n 1 90 LEU n 1 91 PRO n 1 92 ASN n 1 93 GLU n 1 94 VAL n 1 95 VAL n 1 96 PRO n 1 97 VAL n 1 98 LEU n 1 99 TYR n 1 100 GLU n 1 101 CYS n 1 102 ALA n 1 103 ARG n 1 104 THR n 1 105 ASN n 1 106 HIS n 1 107 LEU n 1 108 SER n 1 109 ILE n 1 110 LEU n 1 111 THR n 1 112 TYR n 1 113 ASP n 1 114 GLY n 1 115 ALA n 1 116 GLU n 1 117 ILE n 1 118 VAL n 1 119 THR n 1 120 GLU n 1 121 ASN n 1 122 SER n 1 123 LEU n 1 124 ASP n 1 125 PRO n 1 126 TYR n 1 127 VAL n 1 128 GLN n 1 129 LYS n 1 130 GLU n 1 131 ALA n 1 132 PHE n 1 133 LEU n 1 134 ASN n 1 135 LYS n 1 136 MSE n 1 137 ALA n 1 138 ILE n 1 139 ARG n 1 140 GLU n 1 141 THR n 1 142 ASN n 1 143 ASP n 1 144 PHE n 1 145 LEU n 1 146 THR n 1 147 ASP n 1 148 ILE n 1 149 THR n 1 150 LEU n 1 151 PRO n 1 152 VAL n 1 153 ALA n 1 154 LYS n 1 155 CYS n 1 156 LEU n 1 157 ILE n 1 158 VAL n 1 159 GLY n 1 160 ASP n 1 161 ALA n 1 162 GLY n 1 163 LYS n 1 164 LEU n 1 165 ILE n 1 166 PRO n 1 167 VAL n 1 168 GLU n 1 169 SER n 1 170 GLU n 1 171 LEU n 1 172 CYS n 1 173 ILE n 1 174 ARG n 1 175 LEU n 1 176 GLN n 1 177 GLY n 1 178 LYS n 1 179 ILE n 1 180 ASN n 1 181 VAL n 1 182 PHE n 1 183 ARG n 1 184 SER n 1 185 GLU n 1 186 PRO n 1 187 TYR n 1 188 PHE n 1 189 LEU n 1 190 GLU n 1 191 LEU n 1 192 VAL n 1 193 PRO n 1 194 GLN n 1 195 GLY n 1 196 ILE n 1 197 ASP n 1 198 LYS n 1 199 ALA n 1 200 LEU n 1 201 SER n 1 202 LEU n 1 203 SER n 1 204 VAL n 1 205 LEU n 1 206 LEU n 1 207 GLU n 1 208 ASN n 1 209 ILE n 1 210 GLY n 1 211 MSE n 1 212 THR n 1 213 ARG n 1 214 GLU n 1 215 GLU n 1 216 VAL n 1 217 ILE n 1 218 ALA n 1 219 ILE n 1 220 GLY n 1 221 ASP n 1 222 GLY n 1 223 TYR n 1 224 ASN n 1 225 ASP n 1 226 LEU n 1 227 SER n 1 228 MSE n 1 229 ILE n 1 230 LYS n 1 231 PHE n 1 232 ALA n 1 233 GLY n 1 234 MSE n 1 235 GLY n 1 236 VAL n 1 237 ALA n 1 238 MSE n 1 239 GLY n 1 240 ASN n 1 241 ALA n 1 242 GLN n 1 243 GLU n 1 244 PRO n 1 245 VAL n 1 246 LYS n 1 247 LYS n 1 248 ALA n 1 249 ALA n 1 250 ASP n 1 251 TYR n 1 252 ILE n 1 253 THR n 1 254 LEU n 1 255 THR n 1 256 ASN n 1 257 ASP n 1 258 GLU n 1 259 ASP n 1 260 GLY n 1 261 VAL n 1 262 ALA n 1 263 GLU n 1 264 ALA n 1 265 ILE n 1 266 GLU n 1 267 ARG n 1 268 ILE n 1 269 PHE n 1 270 ASN n 1 271 VAL n 1 272 GLU n 1 273 GLY n 1 274 HIS n 1 275 HIS n 1 276 HIS n 1 277 HIS n 1 278 HIS n 1 279 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BT_3352 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides thetaiotaomicron' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 818 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector pET _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'modified pET26' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8A2F3_BACTN _struct_ref.pdbx_db_accession Q8A2F3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KYKLIVLDLDGTLTNSKKEISSRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFILSYNGGEIINWESKE MMYENVLPNEVVPVLYECARTNHLSILTYDGAEIVTENSLDPYVQKEAFLNKMAIRETNDFLTDITLPVAKCLIVGDAGK LIPVESELCIRLQGKINVFRSEPYFLELVPQGIDKALSLSVLLENIGMTREEVIAIGDGYNDLSMIKFAGMGVAMGNAQE PVKKAADYITLTNDEDGVAEAIERIFNV ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3NIW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 271 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8A2F3 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 269 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 269 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NIW MSE A 1 ? UNP Q8A2F3 ? ? 'expression tag' -1 1 1 3NIW SER A 2 ? UNP Q8A2F3 ? ? 'expression tag' 0 2 1 3NIW LEU A 3 ? UNP Q8A2F3 ? ? 'expression tag' 1 3 1 3NIW GLU A 272 ? UNP Q8A2F3 ? ? 'expression tag' 270 4 1 3NIW GLY A 273 ? UNP Q8A2F3 ? ? 'expression tag' 271 5 1 3NIW HIS A 274 ? UNP Q8A2F3 ? ? 'expression tag' 272 6 1 3NIW HIS A 275 ? UNP Q8A2F3 ? ? 'expression tag' 273 7 1 3NIW HIS A 276 ? UNP Q8A2F3 ? ? 'expression tag' 274 8 1 3NIW HIS A 277 ? UNP Q8A2F3 ? ? 'expression tag' 275 9 1 3NIW HIS A 278 ? UNP Q8A2F3 ? ? 'expression tag' 276 10 1 3NIW HIS A 279 ? UNP Q8A2F3 ? ? 'expression tag' 277 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3NIW _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.68 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.pdbx_details '100mM sodium acetate pH 4.6, 30% PEG 4K, 200mM ammonium acetate, vapor diffusion, temperature 294K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-04-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator Si _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97890 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength_list 0.97890 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 3NIW _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 30.000 _reflns.number_obs 21300 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_netI_over_sigmaI 13.300 _reflns.pdbx_chi_squared 1.968 _reflns.pdbx_redundancy 14.100 _reflns.percent_possible_obs 99.75 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 21353 _reflns.pdbx_Rsym_value 0.085 _reflns.B_iso_Wilson_estimate 23.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.900 1.930 ? ? ? 0.353 ? ? 1.251 14.500 ? 1018 100.000 ? 1 1.930 1.970 ? ? ? 0.319 ? ? 1.245 14.400 ? 1067 100.000 ? 2 1.970 2.010 ? ? ? 0.269 ? ? 1.306 14.500 ? 1048 100.000 ? 3 2.010 2.050 ? ? ? 0.243 ? ? 1.393 14.400 ? 1014 100.000 ? 4 2.050 2.090 ? ? ? 0.219 ? ? 1.416 14.400 ? 1053 100.000 ? 5 2.090 2.140 ? ? ? 0.193 ? ? 1.534 14.400 ? 1061 100.000 ? 6 2.140 2.190 ? ? ? 0.163 ? ? 1.649 14.400 ? 1062 100.000 ? 7 2.190 2.250 ? ? ? 0.149 ? ? 1.733 14.400 ? 1009 100.000 ? 8 2.250 2.320 ? ? ? 0.141 ? ? 1.835 14.300 ? 1076 100.000 ? 9 2.320 2.390 ? ? ? 0.125 ? ? 1.852 14.300 ? 1049 100.000 ? 10 2.390 2.480 ? ? ? 0.119 ? ? 2.031 14.300 ? 1048 100.000 ? 11 2.480 2.580 ? ? ? 0.112 ? ? 2.122 14.200 ? 1082 100.000 ? 12 2.580 2.700 ? ? ? 0.097 ? ? 2.365 14.200 ? 1047 100.000 ? 13 2.700 2.840 ? ? ? 0.087 ? ? 2.475 14.000 ? 1066 100.000 ? 14 2.840 3.020 ? ? ? 0.084 ? ? 2.837 13.900 ? 1060 100.000 ? 15 3.020 3.250 ? ? ? 0.080 ? ? 2.840 13.900 ? 1072 100.000 ? 16 3.250 3.570 ? ? ? 0.078 ? ? 2.368 14.000 ? 1082 100.000 ? 17 3.570 4.090 ? ? ? 0.066 ? ? 2.152 13.600 ? 1095 100.000 ? 18 4.090 5.150 ? ? ? 0.057 ? ? 2.343 13.100 ? 1112 100.000 ? 19 5.150 30.000 ? ? ? 0.064 ? ? 2.704 12.300 ? 1179 99.500 ? 20 # _refine.entry_id 3NIW _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 20.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7800 _refine.ls_number_reflns_obs 21229 _refine.ls_number_reflns_all 21346 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: WITH TLS ADDED ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1783 _refine.ls_R_factor_R_work 0.1769 _refine.ls_wR_factor_R_work 0.1773 _refine.ls_R_factor_R_free 0.2060 _refine.ls_wR_factor_R_free 0.2084 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1084 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 28.3668 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.6600 _refine.aniso_B[2][2] -0.4100 _refine.aniso_B[3][3] -1.2500 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9600 _refine.correlation_coeff_Fo_to_Fc_free 0.9480 _refine.overall_SU_R_Cruickshank_DPI 0.1509 _refine.overall_SU_R_free 0.1319 _refine.pdbx_overall_ESU_R_Free 0.1320 _refine.overall_SU_ML 0.0890 _refine.overall_SU_B 6.5670 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8679 _refine.B_iso_max 59.530 _refine.B_iso_min 16.130 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I 0 _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.151 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2077 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 2178 _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 20.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2140 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1443 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2903 1.446 1.990 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3555 0.948 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 275 5.872 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 98 36.829 25.510 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 393 13.723 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12 22.610 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 338 0.090 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2376 0.006 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 395 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1334 0.854 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 546 0.221 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2165 1.569 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 806 2.544 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 733 4.437 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.9020 _refine_ls_shell.d_res_low 1.9510 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.4800 _refine_ls_shell.number_reflns_R_work 1386 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1770 _refine_ls_shell.R_factor_R_free 0.1690 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 83 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1469 _refine_ls_shell.number_reflns_obs 1386 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3NIW _struct.title 'Crystal structure of a haloacid dehalogenase-like hydrolase from Bacteroides thetaiotaomicron' _struct.pdbx_descriptor 'Haloacid dehalogenase-like hydrolase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NIW _struct_keywords.text ;STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC ; _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown function' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 24 ? GLN A 37 ? SER A 22 GLN A 35 1 ? 14 HELX_P HELX_P2 2 PRO A 48 ? LEU A 59 ? PRO A 46 LEU A 57 1 ? 12 HELX_P HELX_P3 3 ARG A 60 ? PHE A 64 ? ARG A 58 PHE A 62 5 ? 5 HELX_P HELX_P4 4 GLU A 93 ? ASN A 105 ? GLU A 91 ASN A 103 1 ? 13 HELX_P HELX_P5 5 ASP A 124 ? LYS A 135 ? ASP A 122 LYS A 133 1 ? 12 HELX_P HELX_P6 6 ASP A 143 ? ILE A 148 ? ASP A 141 ILE A 146 1 ? 6 HELX_P HELX_P7 7 ASP A 160 ? LEU A 175 ? ASP A 158 LEU A 173 1 ? 16 HELX_P HELX_P8 8 ASP A 197 ? GLY A 210 ? ASP A 195 GLY A 208 1 ? 14 HELX_P HELX_P9 9 THR A 212 ? GLU A 214 ? THR A 210 GLU A 212 5 ? 3 HELX_P HELX_P10 10 GLY A 222 ? ASN A 224 ? GLY A 220 ASN A 222 5 ? 3 HELX_P HELX_P11 11 ASP A 225 ? ALA A 232 ? ASP A 223 ALA A 230 1 ? 8 HELX_P HELX_P12 12 GLN A 242 ? ALA A 249 ? GLN A 240 ALA A 247 1 ? 8 HELX_P HELX_P13 13 THR A 255 ? GLU A 258 ? THR A 253 GLU A 256 5 ? 4 HELX_P HELX_P14 14 ASP A 259 ? PHE A 269 ? ASP A 257 PHE A 267 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ARG 60 C ? ? ? 1_555 A MSE 61 N ? ? A ARG 58 A MSE 59 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A MSE 61 C ? ? ? 1_555 A ASN 62 N ? ? A MSE 59 A ASN 60 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? A GLU 83 C ? ? ? 1_555 A MSE 84 N ? ? A GLU 81 A MSE 82 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? A MSE 84 C ? ? ? 1_555 A MSE 85 N ? ? A MSE 82 A MSE 83 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale5 covale both ? A MSE 85 C ? ? ? 1_555 A TYR 86 N ? ? A MSE 83 A TYR 84 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? A LYS 135 C ? ? ? 1_555 A MSE 136 N ? ? A LYS 133 A MSE 134 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? A MSE 136 C ? ? ? 1_555 A ALA 137 N ? ? A MSE 134 A ALA 135 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale8 covale both ? A GLY 210 C ? ? ? 1_555 A MSE 211 N ? ? A GLY 208 A MSE 209 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale9 covale both ? A MSE 211 C ? ? ? 1_555 A THR 212 N ? ? A MSE 209 A THR 210 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale10 covale both ? A SER 227 C ? ? ? 1_555 A MSE 228 N ? ? A SER 225 A MSE 226 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale11 covale both ? A MSE 228 C ? ? ? 1_555 A ILE 229 N ? ? A MSE 226 A ILE 227 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale12 covale both ? A GLY 233 C ? ? ? 1_555 A MSE 234 N ? ? A GLY 231 A MSE 232 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale13 covale both ? A MSE 234 C ? ? ? 1_555 A GLY 235 N ? ? A MSE 232 A GLY 233 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale14 covale both ? A ALA 237 C ? ? ? 1_555 A MSE 238 N ? ? A ALA 235 A MSE 236 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale15 covale both ? A MSE 238 C ? ? ? 1_555 A GLY 239 N ? ? A MSE 236 A GLY 237 1_555 ? ? ? ? ? ? ? 1.329 ? ? metalc1 metalc ? ? A ASP 11 OD2 ? ? ? 1_555 B MG . MG ? ? A ASP 9 A MG 278 1_555 ? ? ? ? ? ? ? 2.385 ? ? metalc2 metalc ? ? A ASP 13 O ? ? ? 1_555 B MG . MG ? ? A ASP 11 A MG 278 1_555 ? ? ? ? ? ? ? 2.294 ? ? metalc3 metalc ? ? A ASP 221 OD2 ? ? ? 1_555 B MG . MG ? ? A ASP 219 A MG 278 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 278 A HOH 366 1_555 ? ? ? ? ? ? ? 2.461 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 278 A HOH 370 1_555 ? ? ? ? ? ? ? 2.663 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 278 A HOH 371 1_555 ? ? ? ? ? ? ? 2.316 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 150 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 148 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 151 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 149 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.33 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MSE A 84 ? GLU A 87 ? MSE A 82 GLU A 85 A 2 GLU A 75 ? ASN A 78 ? GLU A 73 ASN A 76 A 3 PHE A 67 ? SER A 70 ? PHE A 65 SER A 68 A 4 ARG A 40 ? ALA A 44 ? ARG A 38 ALA A 42 A 5 LEU A 7 ? LEU A 10 ? LEU A 5 LEU A 8 A 6 VAL A 216 ? GLY A 220 ? VAL A 214 GLY A 218 A 7 MSE A 234 ? ALA A 237 ? MSE A 232 ALA A 235 A 8 TYR A 251 ? ILE A 252 ? TYR A 249 ILE A 250 B 1 ALA A 137 ? GLU A 140 ? ALA A 135 GLU A 138 B 2 GLU A 116 ? THR A 119 ? GLU A 114 THR A 117 B 3 SER A 108 ? ASP A 113 ? SER A 106 ASP A 111 B 4 CYS A 155 ? VAL A 158 ? CYS A 153 VAL A 156 B 5 PHE A 188 ? PRO A 193 ? PHE A 186 PRO A 191 B 6 ILE A 179 ? GLU A 185 ? ILE A 177 GLU A 183 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O MSE A 85 ? O MSE A 83 N ILE A 76 ? N ILE A 74 A 2 3 O ILE A 77 ? O ILE A 75 N ILE A 68 ? N ILE A 66 A 3 4 O LEU A 69 ? O LEU A 67 N LEU A 43 ? N LEU A 41 A 4 5 O VAL A 42 ? O VAL A 40 N LEU A 10 ? N LEU A 8 A 5 6 N VAL A 9 ? N VAL A 7 O ILE A 219 ? O ILE A 217 A 6 7 N ALA A 218 ? N ALA A 216 O VAL A 236 ? O VAL A 234 A 7 8 N ALA A 237 ? N ALA A 235 O TYR A 251 ? O TYR A 249 B 1 2 O ARG A 139 ? O ARG A 137 N ILE A 117 ? N ILE A 115 B 2 3 O GLU A 116 ? O GLU A 114 N ASP A 113 ? N ASP A 111 B 3 4 N LEU A 110 ? N LEU A 108 O LEU A 156 ? O LEU A 154 B 4 5 N ILE A 157 ? N ILE A 155 O LEU A 189 ? O LEU A 187 B 5 6 O GLU A 190 ? O GLU A 188 N PHE A 182 ? N PHE A 180 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 278 ? 6 'BINDING SITE FOR RESIDUE MG A 278' AC2 Software A GOL 279 ? 7 'BINDING SITE FOR RESIDUE GOL A 279' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 11 ? ASP A 9 . ? 1_555 ? 2 AC1 6 ASP A 13 ? ASP A 11 . ? 1_555 ? 3 AC1 6 ASP A 221 ? ASP A 219 . ? 1_555 ? 4 AC1 6 HOH D . ? HOH A 366 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 370 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 371 . ? 1_555 ? 7 AC2 7 ARG A 47 ? ARG A 45 . ? 1_555 ? 8 AC2 7 TYR A 112 ? TYR A 110 . ? 1_555 ? 9 AC2 7 GLU A 130 ? GLU A 128 . ? 1_555 ? 10 AC2 7 LYS A 154 ? LYS A 152 . ? 1_555 ? 11 AC2 7 PHE A 188 ? PHE A 186 . ? 1_555 ? 12 AC2 7 GLU A 190 ? GLU A 188 . ? 1_555 ? 13 AC2 7 HOH D . ? HOH A 335 . ? 1_555 ? # _atom_sites.entry_id 3NIW _atom_sites.fract_transf_matrix[1][1] 0.022845 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013752 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012136 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -1 ? ? ? A . n A 1 2 SER 2 0 ? ? ? A . n A 1 3 LEU 3 1 ? ? ? A . n A 1 4 LYS 4 2 2 LYS LYS A . n A 1 5 TYR 5 3 3 TYR TYR A . n A 1 6 LYS 6 4 4 LYS LYS A . n A 1 7 LEU 7 5 5 LEU LEU A . n A 1 8 ILE 8 6 6 ILE ILE A . n A 1 9 VAL 9 7 7 VAL VAL A . n A 1 10 LEU 10 8 8 LEU LEU A . n A 1 11 ASP 11 9 9 ASP ASP A . n A 1 12 LEU 12 10 10 LEU LEU A . n A 1 13 ASP 13 11 11 ASP ASP A . n A 1 14 GLY 14 12 12 GLY GLY A . n A 1 15 THR 15 13 13 THR THR A . n A 1 16 LEU 16 14 14 LEU LEU A . n A 1 17 THR 17 15 15 THR THR A . n A 1 18 ASN 18 16 16 ASN ASN A . n A 1 19 SER 19 17 17 SER SER A . n A 1 20 LYS 20 18 18 LYS LYS A . n A 1 21 LYS 21 19 19 LYS LYS A . n A 1 22 GLU 22 20 20 GLU GLU A . n A 1 23 ILE 23 21 21 ILE ILE A . n A 1 24 SER 24 22 22 SER SER A . n A 1 25 SER 25 23 23 SER SER A . n A 1 26 ARG 26 24 24 ARG ARG A . n A 1 27 ASN 27 25 25 ASN ASN A . n A 1 28 ARG 28 26 26 ARG ARG A . n A 1 29 GLU 29 27 27 GLU GLU A . n A 1 30 THR 30 28 28 THR THR A . n A 1 31 LEU 31 29 29 LEU LEU A . n A 1 32 ILE 32 30 30 ILE ILE A . n A 1 33 ARG 33 31 31 ARG ARG A . n A 1 34 ILE 34 32 32 ILE ILE A . n A 1 35 GLN 35 33 33 GLN GLN A . n A 1 36 GLU 36 34 34 GLU GLU A . n A 1 37 GLN 37 35 35 GLN GLN A . n A 1 38 GLY 38 36 36 GLY GLY A . n A 1 39 ILE 39 37 37 ILE ILE A . n A 1 40 ARG 40 38 38 ARG ARG A . n A 1 41 LEU 41 39 39 LEU LEU A . n A 1 42 VAL 42 40 40 VAL VAL A . n A 1 43 LEU 43 41 41 LEU LEU A . n A 1 44 ALA 44 42 42 ALA ALA A . n A 1 45 SER 45 43 43 SER SER A . n A 1 46 GLY 46 44 44 GLY GLY A . n A 1 47 ARG 47 45 45 ARG ARG A . n A 1 48 PRO 48 46 46 PRO PRO A . n A 1 49 THR 49 47 47 THR THR A . n A 1 50 TYR 50 48 48 TYR TYR A . n A 1 51 GLY 51 49 49 GLY GLY A . n A 1 52 ILE 52 50 50 ILE ILE A . n A 1 53 VAL 53 51 51 VAL VAL A . n A 1 54 PRO 54 52 52 PRO PRO A . n A 1 55 LEU 55 53 53 LEU LEU A . n A 1 56 ALA 56 54 54 ALA ALA A . n A 1 57 ASN 57 55 55 ASN ASN A . n A 1 58 GLU 58 56 56 GLU GLU A . n A 1 59 LEU 59 57 57 LEU LEU A . n A 1 60 ARG 60 58 58 ARG ARG A . n A 1 61 MSE 61 59 59 MSE MSE A . n A 1 62 ASN 62 60 60 ASN ASN A . n A 1 63 GLU 63 61 61 GLU GLU A . n A 1 64 PHE 64 62 62 PHE PHE A . n A 1 65 GLY 65 63 63 GLY GLY A . n A 1 66 GLY 66 64 64 GLY GLY A . n A 1 67 PHE 67 65 65 PHE PHE A . n A 1 68 ILE 68 66 66 ILE ILE A . n A 1 69 LEU 69 67 67 LEU LEU A . n A 1 70 SER 70 68 68 SER SER A . n A 1 71 TYR 71 69 69 TYR TYR A . n A 1 72 ASN 72 70 70 ASN ASN A . n A 1 73 GLY 73 71 71 GLY GLY A . n A 1 74 GLY 74 72 72 GLY GLY A . n A 1 75 GLU 75 73 73 GLU GLU A . n A 1 76 ILE 76 74 74 ILE ILE A . n A 1 77 ILE 77 75 75 ILE ILE A . n A 1 78 ASN 78 76 76 ASN ASN A . n A 1 79 TRP 79 77 77 TRP TRP A . n A 1 80 GLU 80 78 78 GLU GLU A . n A 1 81 SER 81 79 79 SER SER A . n A 1 82 LYS 82 80 80 LYS LYS A . n A 1 83 GLU 83 81 81 GLU GLU A . n A 1 84 MSE 84 82 82 MSE MSE A . n A 1 85 MSE 85 83 83 MSE MSE A . n A 1 86 TYR 86 84 84 TYR TYR A . n A 1 87 GLU 87 85 85 GLU GLU A . n A 1 88 ASN 88 86 86 ASN ASN A . n A 1 89 VAL 89 87 87 VAL VAL A . n A 1 90 LEU 90 88 88 LEU LEU A . n A 1 91 PRO 91 89 89 PRO PRO A . n A 1 92 ASN 92 90 90 ASN ASN A . n A 1 93 GLU 93 91 91 GLU GLU A . n A 1 94 VAL 94 92 92 VAL VAL A . n A 1 95 VAL 95 93 93 VAL VAL A . n A 1 96 PRO 96 94 94 PRO PRO A . n A 1 97 VAL 97 95 95 VAL VAL A . n A 1 98 LEU 98 96 96 LEU LEU A . n A 1 99 TYR 99 97 97 TYR TYR A . n A 1 100 GLU 100 98 98 GLU GLU A . n A 1 101 CYS 101 99 99 CYS CYS A . n A 1 102 ALA 102 100 100 ALA ALA A . n A 1 103 ARG 103 101 101 ARG ARG A . n A 1 104 THR 104 102 102 THR THR A . n A 1 105 ASN 105 103 103 ASN ASN A . n A 1 106 HIS 106 104 104 HIS HIS A . n A 1 107 LEU 107 105 105 LEU LEU A . n A 1 108 SER 108 106 106 SER SER A . n A 1 109 ILE 109 107 107 ILE ILE A . n A 1 110 LEU 110 108 108 LEU LEU A . n A 1 111 THR 111 109 109 THR THR A . n A 1 112 TYR 112 110 110 TYR TYR A . n A 1 113 ASP 113 111 111 ASP ASP A . n A 1 114 GLY 114 112 112 GLY GLY A . n A 1 115 ALA 115 113 113 ALA ALA A . n A 1 116 GLU 116 114 114 GLU GLU A . n A 1 117 ILE 117 115 115 ILE ILE A . n A 1 118 VAL 118 116 116 VAL VAL A . n A 1 119 THR 119 117 117 THR THR A . n A 1 120 GLU 120 118 118 GLU GLU A . n A 1 121 ASN 121 119 119 ASN ASN A . n A 1 122 SER 122 120 120 SER SER A . n A 1 123 LEU 123 121 121 LEU LEU A . n A 1 124 ASP 124 122 122 ASP ASP A . n A 1 125 PRO 125 123 123 PRO PRO A . n A 1 126 TYR 126 124 124 TYR TYR A . n A 1 127 VAL 127 125 125 VAL VAL A . n A 1 128 GLN 128 126 126 GLN GLN A . n A 1 129 LYS 129 127 127 LYS LYS A . n A 1 130 GLU 130 128 128 GLU GLU A . n A 1 131 ALA 131 129 129 ALA ALA A . n A 1 132 PHE 132 130 130 PHE PHE A . n A 1 133 LEU 133 131 131 LEU LEU A . n A 1 134 ASN 134 132 132 ASN ASN A . n A 1 135 LYS 135 133 133 LYS LYS A . n A 1 136 MSE 136 134 134 MSE MSE A . n A 1 137 ALA 137 135 135 ALA ALA A . n A 1 138 ILE 138 136 136 ILE ILE A . n A 1 139 ARG 139 137 137 ARG ARG A . n A 1 140 GLU 140 138 138 GLU GLU A . n A 1 141 THR 141 139 139 THR THR A . n A 1 142 ASN 142 140 140 ASN ASN A . n A 1 143 ASP 143 141 141 ASP ASP A . n A 1 144 PHE 144 142 142 PHE PHE A . n A 1 145 LEU 145 143 143 LEU LEU A . n A 1 146 THR 146 144 144 THR THR A . n A 1 147 ASP 147 145 145 ASP ASP A . n A 1 148 ILE 148 146 146 ILE ILE A . n A 1 149 THR 149 147 147 THR THR A . n A 1 150 LEU 150 148 148 LEU LEU A . n A 1 151 PRO 151 149 149 PRO PRO A . n A 1 152 VAL 152 150 150 VAL VAL A . n A 1 153 ALA 153 151 151 ALA ALA A . n A 1 154 LYS 154 152 152 LYS LYS A . n A 1 155 CYS 155 153 153 CYS CYS A . n A 1 156 LEU 156 154 154 LEU LEU A . n A 1 157 ILE 157 155 155 ILE ILE A . n A 1 158 VAL 158 156 156 VAL VAL A . n A 1 159 GLY 159 157 157 GLY GLY A . n A 1 160 ASP 160 158 158 ASP ASP A . n A 1 161 ALA 161 159 159 ALA ALA A . n A 1 162 GLY 162 160 160 GLY GLY A . n A 1 163 LYS 163 161 161 LYS LYS A . n A 1 164 LEU 164 162 162 LEU LEU A . n A 1 165 ILE 165 163 163 ILE ILE A . n A 1 166 PRO 166 164 164 PRO PRO A . n A 1 167 VAL 167 165 165 VAL VAL A . n A 1 168 GLU 168 166 166 GLU GLU A . n A 1 169 SER 169 167 167 SER SER A . n A 1 170 GLU 170 168 168 GLU GLU A . n A 1 171 LEU 171 169 169 LEU LEU A . n A 1 172 CYS 172 170 170 CYS CYS A . n A 1 173 ILE 173 171 171 ILE ILE A . n A 1 174 ARG 174 172 172 ARG ARG A . n A 1 175 LEU 175 173 173 LEU LEU A . n A 1 176 GLN 176 174 174 GLN GLN A . n A 1 177 GLY 177 175 175 GLY GLY A . n A 1 178 LYS 178 176 176 LYS LYS A . n A 1 179 ILE 179 177 177 ILE ILE A . n A 1 180 ASN 180 178 178 ASN ASN A . n A 1 181 VAL 181 179 179 VAL VAL A . n A 1 182 PHE 182 180 180 PHE PHE A . n A 1 183 ARG 183 181 181 ARG ARG A . n A 1 184 SER 184 182 182 SER SER A . n A 1 185 GLU 185 183 183 GLU GLU A . n A 1 186 PRO 186 184 184 PRO PRO A . n A 1 187 TYR 187 185 185 TYR TYR A . n A 1 188 PHE 188 186 186 PHE PHE A . n A 1 189 LEU 189 187 187 LEU LEU A . n A 1 190 GLU 190 188 188 GLU GLU A . n A 1 191 LEU 191 189 189 LEU LEU A . n A 1 192 VAL 192 190 190 VAL VAL A . n A 1 193 PRO 193 191 191 PRO PRO A . n A 1 194 GLN 194 192 192 GLN GLN A . n A 1 195 GLY 195 193 193 GLY GLY A . n A 1 196 ILE 196 194 194 ILE ILE A . n A 1 197 ASP 197 195 195 ASP ASP A . n A 1 198 LYS 198 196 196 LYS LYS A . n A 1 199 ALA 199 197 197 ALA ALA A . n A 1 200 LEU 200 198 198 LEU LEU A . n A 1 201 SER 201 199 199 SER SER A . n A 1 202 LEU 202 200 200 LEU LEU A . n A 1 203 SER 203 201 201 SER SER A . n A 1 204 VAL 204 202 202 VAL VAL A . n A 1 205 LEU 205 203 203 LEU LEU A . n A 1 206 LEU 206 204 204 LEU LEU A . n A 1 207 GLU 207 205 205 GLU GLU A . n A 1 208 ASN 208 206 206 ASN ASN A . n A 1 209 ILE 209 207 207 ILE ILE A . n A 1 210 GLY 210 208 208 GLY GLY A . n A 1 211 MSE 211 209 209 MSE MSE A . n A 1 212 THR 212 210 210 THR THR A . n A 1 213 ARG 213 211 211 ARG ARG A . n A 1 214 GLU 214 212 212 GLU GLU A . n A 1 215 GLU 215 213 213 GLU GLU A . n A 1 216 VAL 216 214 214 VAL VAL A . n A 1 217 ILE 217 215 215 ILE ILE A . n A 1 218 ALA 218 216 216 ALA ALA A . n A 1 219 ILE 219 217 217 ILE ILE A . n A 1 220 GLY 220 218 218 GLY GLY A . n A 1 221 ASP 221 219 219 ASP ASP A . n A 1 222 GLY 222 220 220 GLY GLY A . n A 1 223 TYR 223 221 221 TYR TYR A . n A 1 224 ASN 224 222 222 ASN ASN A . n A 1 225 ASP 225 223 223 ASP ASP A . n A 1 226 LEU 226 224 224 LEU LEU A . n A 1 227 SER 227 225 225 SER SER A . n A 1 228 MSE 228 226 226 MSE MSE A . n A 1 229 ILE 229 227 227 ILE ILE A . n A 1 230 LYS 230 228 228 LYS LYS A . n A 1 231 PHE 231 229 229 PHE PHE A . n A 1 232 ALA 232 230 230 ALA ALA A . n A 1 233 GLY 233 231 231 GLY GLY A . n A 1 234 MSE 234 232 232 MSE MSE A . n A 1 235 GLY 235 233 233 GLY GLY A . n A 1 236 VAL 236 234 234 VAL VAL A . n A 1 237 ALA 237 235 235 ALA ALA A . n A 1 238 MSE 238 236 236 MSE MSE A . n A 1 239 GLY 239 237 237 GLY GLY A . n A 1 240 ASN 240 238 238 ASN ASN A . n A 1 241 ALA 241 239 239 ALA ALA A . n A 1 242 GLN 242 240 240 GLN GLN A . n A 1 243 GLU 243 241 241 GLU GLU A . n A 1 244 PRO 244 242 242 PRO PRO A . n A 1 245 VAL 245 243 243 VAL VAL A . n A 1 246 LYS 246 244 244 LYS LYS A . n A 1 247 LYS 247 245 245 LYS LYS A . n A 1 248 ALA 248 246 246 ALA ALA A . n A 1 249 ALA 249 247 247 ALA ALA A . n A 1 250 ASP 250 248 248 ASP ASP A . n A 1 251 TYR 251 249 249 TYR TYR A . n A 1 252 ILE 252 250 250 ILE ILE A . n A 1 253 THR 253 251 251 THR THR A . n A 1 254 LEU 254 252 252 LEU LEU A . n A 1 255 THR 255 253 253 THR THR A . n A 1 256 ASN 256 254 254 ASN ASN A . n A 1 257 ASP 257 255 255 ASP ASP A . n A 1 258 GLU 258 256 256 GLU GLU A . n A 1 259 ASP 259 257 257 ASP ASP A . n A 1 260 GLY 260 258 258 GLY GLY A . n A 1 261 VAL 261 259 259 VAL VAL A . n A 1 262 ALA 262 260 260 ALA ALA A . n A 1 263 GLU 263 261 261 GLU GLU A . n A 1 264 ALA 264 262 262 ALA ALA A . n A 1 265 ILE 265 263 263 ILE ILE A . n A 1 266 GLU 266 264 264 GLU GLU A . n A 1 267 ARG 267 265 265 ARG ARG A . n A 1 268 ILE 268 266 266 ILE ILE A . n A 1 269 PHE 269 267 267 PHE PHE A . n A 1 270 ASN 270 268 ? ? ? A . n A 1 271 VAL 271 269 ? ? ? A . n A 1 272 GLU 272 270 ? ? ? A . n A 1 273 GLY 273 271 ? ? ? A . n A 1 274 HIS 274 272 ? ? ? A . n A 1 275 HIS 275 273 ? ? ? A . n A 1 276 HIS 276 274 ? ? ? A . n A 1 277 HIS 277 275 ? ? ? A . n A 1 278 HIS 278 276 ? ? ? A . n A 1 279 HIS 279 277 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 278 1 MG MG A . C 3 GOL 1 279 1 GOL GOL A . D 4 HOH 1 280 1 HOH HOH A . D 4 HOH 2 281 2 HOH HOH A . D 4 HOH 3 282 3 HOH HOH A . D 4 HOH 4 283 4 HOH HOH A . D 4 HOH 5 284 5 HOH HOH A . D 4 HOH 6 285 6 HOH HOH A . D 4 HOH 7 286 7 HOH HOH A . D 4 HOH 8 287 8 HOH HOH A . D 4 HOH 9 288 9 HOH HOH A . D 4 HOH 10 289 10 HOH HOH A . D 4 HOH 11 290 11 HOH HOH A . D 4 HOH 12 291 12 HOH HOH A . D 4 HOH 13 292 13 HOH HOH A . D 4 HOH 14 293 14 HOH HOH A . D 4 HOH 15 294 15 HOH HOH A . D 4 HOH 16 295 16 HOH HOH A . D 4 HOH 17 296 17 HOH HOH A . D 4 HOH 18 297 18 HOH HOH A . D 4 HOH 19 298 19 HOH HOH A . D 4 HOH 20 299 20 HOH HOH A . D 4 HOH 21 300 21 HOH HOH A . D 4 HOH 22 301 22 HOH HOH A . D 4 HOH 23 302 23 HOH HOH A . D 4 HOH 24 303 24 HOH HOH A . D 4 HOH 25 304 25 HOH HOH A . D 4 HOH 26 305 26 HOH HOH A . D 4 HOH 27 306 27 HOH HOH A . D 4 HOH 28 307 28 HOH HOH A . D 4 HOH 29 308 29 HOH HOH A . D 4 HOH 30 309 30 HOH HOH A . D 4 HOH 31 310 31 HOH HOH A . D 4 HOH 32 311 32 HOH HOH A . D 4 HOH 33 312 33 HOH HOH A . D 4 HOH 34 313 34 HOH HOH A . D 4 HOH 35 314 35 HOH HOH A . D 4 HOH 36 315 36 HOH HOH A . D 4 HOH 37 316 37 HOH HOH A . D 4 HOH 38 317 38 HOH HOH A . D 4 HOH 39 318 39 HOH HOH A . D 4 HOH 40 319 40 HOH HOH A . D 4 HOH 41 320 41 HOH HOH A . D 4 HOH 42 321 42 HOH HOH A . D 4 HOH 43 322 43 HOH HOH A . D 4 HOH 44 323 44 HOH HOH A . D 4 HOH 45 324 45 HOH HOH A . D 4 HOH 46 325 46 HOH HOH A . D 4 HOH 47 326 47 HOH HOH A . D 4 HOH 48 327 48 HOH HOH A . D 4 HOH 49 328 49 HOH HOH A . D 4 HOH 50 329 50 HOH HOH A . D 4 HOH 51 330 51 HOH HOH A . D 4 HOH 52 331 52 HOH HOH A . D 4 HOH 53 332 53 HOH HOH A . D 4 HOH 54 333 54 HOH HOH A . D 4 HOH 55 334 55 HOH HOH A . D 4 HOH 56 335 56 HOH HOH A . D 4 HOH 57 336 57 HOH HOH A . D 4 HOH 58 337 58 HOH HOH A . D 4 HOH 59 338 59 HOH HOH A . D 4 HOH 60 339 60 HOH HOH A . D 4 HOH 61 340 61 HOH HOH A . D 4 HOH 62 341 62 HOH HOH A . D 4 HOH 63 342 63 HOH HOH A . D 4 HOH 64 343 64 HOH HOH A . D 4 HOH 65 344 65 HOH HOH A . D 4 HOH 66 345 66 HOH HOH A . D 4 HOH 67 346 67 HOH HOH A . D 4 HOH 68 347 68 HOH HOH A . D 4 HOH 69 348 69 HOH HOH A . D 4 HOH 70 349 70 HOH HOH A . D 4 HOH 71 350 71 HOH HOH A . D 4 HOH 72 351 72 HOH HOH A . D 4 HOH 73 352 73 HOH HOH A . D 4 HOH 74 353 74 HOH HOH A . D 4 HOH 75 354 75 HOH HOH A . D 4 HOH 76 355 76 HOH HOH A . D 4 HOH 77 356 78 HOH HOH A . D 4 HOH 78 357 79 HOH HOH A . D 4 HOH 79 358 80 HOH HOH A . D 4 HOH 80 359 81 HOH HOH A . D 4 HOH 81 360 82 HOH HOH A . D 4 HOH 82 361 83 HOH HOH A . D 4 HOH 83 362 84 HOH HOH A . D 4 HOH 84 363 85 HOH HOH A . D 4 HOH 85 364 86 HOH HOH A . D 4 HOH 86 365 87 HOH HOH A . D 4 HOH 87 366 88 HOH HOH A . D 4 HOH 88 367 89 HOH HOH A . D 4 HOH 89 368 90 HOH HOH A . D 4 HOH 90 369 91 HOH HOH A . D 4 HOH 91 370 92 HOH HOH A . D 4 HOH 92 371 93 HOH HOH A . D 4 HOH 93 372 94 HOH HOH A . D 4 HOH 94 373 95 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 61 A MSE 59 ? MET SELENOMETHIONINE 2 A MSE 84 A MSE 82 ? MET SELENOMETHIONINE 3 A MSE 85 A MSE 83 ? MET SELENOMETHIONINE 4 A MSE 136 A MSE 134 ? MET SELENOMETHIONINE 5 A MSE 211 A MSE 209 ? MET SELENOMETHIONINE 6 A MSE 228 A MSE 226 ? MET SELENOMETHIONINE 7 A MSE 234 A MSE 232 ? MET SELENOMETHIONINE 8 A MSE 238 A MSE 236 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 11 ? A ASP 9 ? 1_555 MG ? B MG . ? A MG 278 ? 1_555 O ? A ASP 13 ? A ASP 11 ? 1_555 110.6 ? 2 OD2 ? A ASP 11 ? A ASP 9 ? 1_555 MG ? B MG . ? A MG 278 ? 1_555 OD2 ? A ASP 221 ? A ASP 219 ? 1_555 99.3 ? 3 O ? A ASP 13 ? A ASP 11 ? 1_555 MG ? B MG . ? A MG 278 ? 1_555 OD2 ? A ASP 221 ? A ASP 219 ? 1_555 87.9 ? 4 OD2 ? A ASP 11 ? A ASP 9 ? 1_555 MG ? B MG . ? A MG 278 ? 1_555 O ? D HOH . ? A HOH 366 ? 1_555 171.8 ? 5 O ? A ASP 13 ? A ASP 11 ? 1_555 MG ? B MG . ? A MG 278 ? 1_555 O ? D HOH . ? A HOH 366 ? 1_555 77.2 ? 6 OD2 ? A ASP 221 ? A ASP 219 ? 1_555 MG ? B MG . ? A MG 278 ? 1_555 O ? D HOH . ? A HOH 366 ? 1_555 83.1 ? 7 OD2 ? A ASP 11 ? A ASP 9 ? 1_555 MG ? B MG . ? A MG 278 ? 1_555 O ? D HOH . ? A HOH 370 ? 1_555 79.2 ? 8 O ? A ASP 13 ? A ASP 11 ? 1_555 MG ? B MG . ? A MG 278 ? 1_555 O ? D HOH . ? A HOH 370 ? 1_555 168.8 ? 9 OD2 ? A ASP 221 ? A ASP 219 ? 1_555 MG ? B MG . ? A MG 278 ? 1_555 O ? D HOH . ? A HOH 370 ? 1_555 95.9 ? 10 O ? D HOH . ? A HOH 366 ? 1_555 MG ? B MG . ? A MG 278 ? 1_555 O ? D HOH . ? A HOH 370 ? 1_555 92.7 ? 11 OD2 ? A ASP 11 ? A ASP 9 ? 1_555 MG ? B MG . ? A MG 278 ? 1_555 O ? D HOH . ? A HOH 371 ? 1_555 72.9 ? 12 O ? A ASP 13 ? A ASP 11 ? 1_555 MG ? B MG . ? A MG 278 ? 1_555 O ? D HOH . ? A HOH 371 ? 1_555 91.9 ? 13 OD2 ? A ASP 221 ? A ASP 219 ? 1_555 MG ? B MG . ? A MG 278 ? 1_555 O ? D HOH . ? A HOH 371 ? 1_555 171.6 ? 14 O ? D HOH . ? A HOH 366 ? 1_555 MG ? B MG . ? A MG 278 ? 1_555 O ? D HOH . ? A HOH 371 ? 1_555 105.1 ? 15 O ? D HOH . ? A HOH 370 ? 1_555 MG ? B MG . ? A MG 278 ? 1_555 O ? D HOH . ? A HOH 371 ? 1_555 85.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2018-11-21 5 'Structure model' 1 4 2021-02-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' audit_author 3 5 'Structure model' audit_author 4 5 'Structure model' citation_author 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.identifier_ORCID' 2 5 'Structure model' '_audit_author.identifier_ORCID' 3 5 'Structure model' '_citation_author.identifier_ORCID' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.value' 17 5 'Structure model' '_struct_conn.pdbx_dist_value' 18 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 5 'Structure model' '_struct_ref_seq_dif.details' 31 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -12.5032 _pdbx_refine_tls.origin_y -21.5278 _pdbx_refine_tls.origin_z -15.0301 _pdbx_refine_tls.T[1][1] 0.0253 _pdbx_refine_tls.T[2][2] 0.0236 _pdbx_refine_tls.T[3][3] 0.0366 _pdbx_refine_tls.T[1][2] 0.0080 _pdbx_refine_tls.T[1][3] 0.0035 _pdbx_refine_tls.T[2][3] -0.0164 _pdbx_refine_tls.L[1][1] 0.2747 _pdbx_refine_tls.L[2][2] 0.3224 _pdbx_refine_tls.L[3][3] 0.7655 _pdbx_refine_tls.L[1][2] 0.0178 _pdbx_refine_tls.L[1][3] 0.2378 _pdbx_refine_tls.L[2][3] -0.1903 _pdbx_refine_tls.S[1][1] 0.0315 _pdbx_refine_tls.S[2][2] -0.0192 _pdbx_refine_tls.S[3][3] -0.0123 _pdbx_refine_tls.S[1][2] 0.0263 _pdbx_refine_tls.S[1][3] 0.0416 _pdbx_refine_tls.S[2][3] -0.0243 _pdbx_refine_tls.S[2][1] -0.0294 _pdbx_refine_tls.S[3][1] -0.0184 _pdbx_refine_tls.S[3][2] 0.0940 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 2 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 267 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 7 SHELXCD . ? ? ? ? phasing ? ? ? 8 SHELXE . ? ? ? ? 'model building' ? ? ? 9 Coot . ? ? ? ? 'model building' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 10 ? ? -95.24 -76.04 2 1 THR A 13 ? ? -133.37 -83.20 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -1 ? A MSE 1 2 1 Y 1 A SER 0 ? A SER 2 3 1 Y 1 A LEU 1 ? A LEU 3 4 1 Y 1 A ASN 268 ? A ASN 270 5 1 Y 1 A VAL 269 ? A VAL 271 6 1 Y 1 A GLU 270 ? A GLU 272 7 1 Y 1 A GLY 271 ? A GLY 273 8 1 Y 1 A HIS 272 ? A HIS 274 9 1 Y 1 A HIS 273 ? A HIS 275 10 1 Y 1 A HIS 274 ? A HIS 276 11 1 Y 1 A HIS 275 ? A HIS 277 12 1 Y 1 A HIS 276 ? A HIS 278 13 1 Y 1 A HIS 277 ? A HIS 279 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 GLYCEROL GOL 4 water HOH #