HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-JUN-10 3NJA TITLE THE CRYSTAL STRUCTURE OF THE PAS DOMAIN OF A GGDEF FAMILY PROTEIN FROM TITLE 2 CHROMOBACTERIUM VIOLACEUM ATCC 12472. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE GGDEF FAMILY PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHROMOBACTERIUM VIOLACEUM; SOURCE 3 ORGANISM_TAXID: 243365; SOURCE 4 STRAIN: ATCC 12472; SOURCE 5 GENE: CV_1582; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,R.WU,B.FELDMANN,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 1 18-AUG-10 3NJA 0 JRNL AUTH K.TAN,R.WU,B.FELDMANN,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE PAS DOMAIN OF A GGDEF FAMILY JRNL TITL 2 PROTEIN FROM CHROMOBACTERIUM VIOLACEUM ATCC 12472. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 18876 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0873 - 4.5277 0.97 2913 143 0.1707 0.2156 REMARK 3 2 4.5277 - 3.5948 0.99 2800 148 0.1759 0.2721 REMARK 3 3 3.5948 - 3.1407 0.98 2720 162 0.2217 0.3028 REMARK 3 4 3.1407 - 2.8537 0.94 2594 149 0.2471 0.4443 REMARK 3 5 2.8537 - 2.6492 0.89 2463 126 0.2574 0.3486 REMARK 3 6 2.6492 - 2.4930 0.83 2287 134 0.2730 0.4322 REMARK 3 7 2.4930 - 2.3682 0.77 2121 116 0.3075 0.3671 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 41.96 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.13230 REMARK 3 B22 (A**2) : 11.92820 REMARK 3 B33 (A**2) : -20.06040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3676 REMARK 3 ANGLE : 1.066 4978 REMARK 3 CHIRALITY : 0.070 510 REMARK 3 PLANARITY : 0.004 669 REMARK 3 DIHEDRAL : 20.229 1362 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A OR CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 7.4493 60.8196 21.8337 REMARK 3 T TENSOR REMARK 3 T11: 0.3702 T22: 0.2669 REMARK 3 T33: 0.2055 T12: -0.0157 REMARK 3 T13: -0.0100 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.5892 L22: 0.3640 REMARK 3 L33: 2.9806 L12: 0.0194 REMARK 3 L13: 0.4125 L23: 1.0179 REMARK 3 S TENSOR REMARK 3 S11: 0.2349 S12: 0.1409 S13: -0.0306 REMARK 3 S21: -0.0173 S22: -0.2462 S23: 0.0150 REMARK 3 S31: 0.0791 S32: -0.1546 S33: 0.0038 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN C OR CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 28.1281 41.1038 38.3716 REMARK 3 T TENSOR REMARK 3 T11: 0.2792 T22: 0.3492 REMARK 3 T33: 0.2121 T12: -0.1094 REMARK 3 T13: -0.0418 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.4420 L22: 0.5973 REMARK 3 L33: 2.7060 L12: 0.0586 REMARK 3 L13: 0.1001 L23: -0.2277 REMARK 3 S TENSOR REMARK 3 S11: -0.4011 S12: 0.2626 S13: 0.0275 REMARK 3 S21: -0.1571 S22: 0.2496 S23: -0.0124 REMARK 3 S31: -0.0021 S32: -0.2514 S33: 0.0962 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NJA COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB059899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.368 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.67600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/RESOLVE/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M BIS-TRIS, REMARK 280 25% W/V PEG3350, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.28500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.76350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.28500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.76350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. THE CHAINS A AND B, C AND D MAY REMARK 300 FORM DIMERS RESPECTIVELY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 131.05400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 60.57000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 65.52700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL C 124 LIES ON A SPECIAL POSITION. REMARK 375 CL CL D 125 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 HIS A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 ASP A 12 REMARK 465 ALA A 13 REMARK 465 HIS A 120 REMARK 465 LYS A 121 REMARK 465 GLN A 122 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 4 REMARK 465 LEU B 5 REMARK 465 LEU B 6 REMARK 465 HIS B 7 REMARK 465 THR B 8 REMARK 465 ALA B 9 REMARK 465 GLU B 10 REMARK 465 SER B 11 REMARK 465 HIS B 120 REMARK 465 LYS B 121 REMARK 465 GLN B 122 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MSE C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 LYS C 4 REMARK 465 LEU C 5 REMARK 465 LEU C 6 REMARK 465 HIS C 7 REMARK 465 THR C 8 REMARK 465 ALA C 9 REMARK 465 GLU C 10 REMARK 465 SER C 11 REMARK 465 ASP C 12 REMARK 465 LYS C 121 REMARK 465 GLN C 122 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 MSE D 1 REMARK 465 ALA D 2 REMARK 465 GLU D 3 REMARK 465 LYS D 4 REMARK 465 LEU D 5 REMARK 465 LEU D 6 REMARK 465 HIS D 7 REMARK 465 THR D 8 REMARK 465 ALA D 9 REMARK 465 GLU D 10 REMARK 465 SER D 11 REMARK 465 ASP D 12 REMARK 465 ALA D 13 REMARK 465 GLY D 14 REMARK 465 HIS D 120 REMARK 465 LYS D 121 REMARK 465 GLN D 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 76 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 76 174.29 -51.98 REMARK 500 PHE A 77 161.30 175.61 REMARK 500 THR A 118 -15.35 -49.55 REMARK 500 ALA C 46 58.90 38.98 REMARK 500 HIS C 109 147.84 -172.21 REMARK 500 GLU D 23 -69.12 -95.44 REMARK 500 SER D 24 -33.23 -34.87 REMARK 500 ASP D 74 108.21 -55.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 125 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC67511.1 RELATED DB: TARGETDB DBREF 3NJA A 1 122 UNP Q7NXP4 Q7NXP4_CHRVO 1 122 DBREF 3NJA B 1 122 UNP Q7NXP4 Q7NXP4_CHRVO 1 122 DBREF 3NJA C 1 122 UNP Q7NXP4 Q7NXP4_CHRVO 1 122 DBREF 3NJA D 1 122 UNP Q7NXP4 Q7NXP4_CHRVO 1 122 SEQADV 3NJA SER A -2 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ASN A -1 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ALA A 0 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA SER B -2 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ASN B -1 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ALA B 0 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA SER C -2 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ASN C -1 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ALA C 0 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA SER D -2 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ASN D -1 UNP Q7NXP4 EXPRESSION TAG SEQADV 3NJA ALA D 0 UNP Q7NXP4 EXPRESSION TAG SEQRES 1 A 125 SER ASN ALA MSE ALA GLU LYS LEU LEU HIS THR ALA GLU SEQRES 2 A 125 SER ASP ALA GLY ILE GLY SER TRP VAL LEU HIS MSE GLU SEQRES 3 A 125 SER GLY ARG LEU GLU TRP SER GLN ALA VAL HIS ASP ILE SEQRES 4 A 125 PHE GLY THR ASP SER ALA THR PHE ASP ALA THR GLU ASP SEQRES 5 A 125 ALA TYR PHE GLN ARG VAL HIS PRO ASP ASP ARG ALA ARG SEQRES 6 A 125 VAL ARG ARG GLU LEU ASP ARG HIS VAL LEU GLY ASP ARG SEQRES 7 A 125 PRO PHE ASP VAL GLU TYR ARG ILE VAL ARG PRO ASP GLY SEQRES 8 A 125 GLN VAL ARG GLU LEU LEU GLU ARG ASN HIS ILE GLN ARG SEQRES 9 A 125 GLN ALA SER GLY GLN VAL ASP HIS LEU TRP GLY THR VAL SEQRES 10 A 125 ILE ASP MSE THR GLU HIS LYS GLN SEQRES 1 B 125 SER ASN ALA MSE ALA GLU LYS LEU LEU HIS THR ALA GLU SEQRES 2 B 125 SER ASP ALA GLY ILE GLY SER TRP VAL LEU HIS MSE GLU SEQRES 3 B 125 SER GLY ARG LEU GLU TRP SER GLN ALA VAL HIS ASP ILE SEQRES 4 B 125 PHE GLY THR ASP SER ALA THR PHE ASP ALA THR GLU ASP SEQRES 5 B 125 ALA TYR PHE GLN ARG VAL HIS PRO ASP ASP ARG ALA ARG SEQRES 6 B 125 VAL ARG ARG GLU LEU ASP ARG HIS VAL LEU GLY ASP ARG SEQRES 7 B 125 PRO PHE ASP VAL GLU TYR ARG ILE VAL ARG PRO ASP GLY SEQRES 8 B 125 GLN VAL ARG GLU LEU LEU GLU ARG ASN HIS ILE GLN ARG SEQRES 9 B 125 GLN ALA SER GLY GLN VAL ASP HIS LEU TRP GLY THR VAL SEQRES 10 B 125 ILE ASP MSE THR GLU HIS LYS GLN SEQRES 1 C 125 SER ASN ALA MSE ALA GLU LYS LEU LEU HIS THR ALA GLU SEQRES 2 C 125 SER ASP ALA GLY ILE GLY SER TRP VAL LEU HIS MSE GLU SEQRES 3 C 125 SER GLY ARG LEU GLU TRP SER GLN ALA VAL HIS ASP ILE SEQRES 4 C 125 PHE GLY THR ASP SER ALA THR PHE ASP ALA THR GLU ASP SEQRES 5 C 125 ALA TYR PHE GLN ARG VAL HIS PRO ASP ASP ARG ALA ARG SEQRES 6 C 125 VAL ARG ARG GLU LEU ASP ARG HIS VAL LEU GLY ASP ARG SEQRES 7 C 125 PRO PHE ASP VAL GLU TYR ARG ILE VAL ARG PRO ASP GLY SEQRES 8 C 125 GLN VAL ARG GLU LEU LEU GLU ARG ASN HIS ILE GLN ARG SEQRES 9 C 125 GLN ALA SER GLY GLN VAL ASP HIS LEU TRP GLY THR VAL SEQRES 10 C 125 ILE ASP MSE THR GLU HIS LYS GLN SEQRES 1 D 125 SER ASN ALA MSE ALA GLU LYS LEU LEU HIS THR ALA GLU SEQRES 2 D 125 SER ASP ALA GLY ILE GLY SER TRP VAL LEU HIS MSE GLU SEQRES 3 D 125 SER GLY ARG LEU GLU TRP SER GLN ALA VAL HIS ASP ILE SEQRES 4 D 125 PHE GLY THR ASP SER ALA THR PHE ASP ALA THR GLU ASP SEQRES 5 D 125 ALA TYR PHE GLN ARG VAL HIS PRO ASP ASP ARG ALA ARG SEQRES 6 D 125 VAL ARG ARG GLU LEU ASP ARG HIS VAL LEU GLY ASP ARG SEQRES 7 D 125 PRO PHE ASP VAL GLU TYR ARG ILE VAL ARG PRO ASP GLY SEQRES 8 D 125 GLN VAL ARG GLU LEU LEU GLU ARG ASN HIS ILE GLN ARG SEQRES 9 D 125 GLN ALA SER GLY GLN VAL ASP HIS LEU TRP GLY THR VAL SEQRES 10 D 125 ILE ASP MSE THR GLU HIS LYS GLN MODRES 3NJA MSE A 22 MET SELENOMETHIONINE MODRES 3NJA MSE A 117 MET SELENOMETHIONINE MODRES 3NJA MSE B 22 MET SELENOMETHIONINE MODRES 3NJA MSE B 117 MET SELENOMETHIONINE MODRES 3NJA MSE C 22 MET SELENOMETHIONINE MODRES 3NJA MSE C 117 MET SELENOMETHIONINE MODRES 3NJA MSE D 22 MET SELENOMETHIONINE MODRES 3NJA MSE D 117 MET SELENOMETHIONINE HET MSE A 22 8 HET MSE A 117 8 HET MSE B 22 8 HET MSE B 117 8 HET MSE C 22 8 HET MSE C 117 8 HET MSE D 22 8 HET MSE D 117 8 HET GOL A 123 6 HET GOL B 123 6 HET SO4 B 124 5 HET SO4 C 123 5 HET CL C 124 1 HET GOL D 123 6 HET GOL D 124 6 HET CL D 125 1 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 CL 2(CL 1-) FORMUL 13 HOH *21(H2 O) HELIX 1 1 SER A 30 GLY A 38 1 9 HELIX 2 2 THR A 47 VAL A 55 1 9 HELIX 3 3 ASP A 59 GLY A 73 1 15 HELIX 4 4 SER B 30 GLY B 38 1 9 HELIX 5 5 ASP B 40 PHE B 44 5 5 HELIX 6 6 THR B 47 ARG B 54 1 8 HELIX 7 7 ASP B 59 LEU B 72 1 14 HELIX 8 8 SER C 30 GLY C 38 1 9 HELIX 9 9 THR C 47 GLN C 53 1 7 HELIX 10 10 ASP C 59 LEU C 72 1 14 HELIX 11 11 SER D 30 GLY D 38 1 9 HELIX 12 12 THR D 47 GLN D 53 1 7 HELIX 13 13 HIS D 56 LEU D 72 1 17 SHEET 1 A 5 ARG A 26 TRP A 29 0 SHEET 2 A 5 GLY A 16 HIS A 21 -1 N HIS A 21 O ARG A 26 SHEET 3 A 5 VAL B 107 ASP B 116 -1 O GLY B 112 N TRP A 18 SHEET 4 A 5 VAL B 90 ARG B 101 -1 N LEU B 94 O ILE B 115 SHEET 5 A 5 PHE B 77 VAL B 84 -1 N PHE B 77 O ASN B 97 SHEET 1 B 5 PHE A 77 VAL A 84 0 SHEET 2 B 5 VAL A 90 ARG A 101 -1 O ASN A 97 N PHE A 77 SHEET 3 B 5 VAL A 107 ASP A 116 -1 O ASP A 108 N GLN A 100 SHEET 4 B 5 GLY B 16 HIS B 21 -1 O TRP B 18 N GLY A 112 SHEET 5 B 5 LEU B 27 TRP B 29 -1 O GLU B 28 N VAL B 19 SHEET 1 C 5 LEU C 27 TRP C 29 0 SHEET 2 C 5 GLY C 16 HIS C 21 -1 N VAL C 19 O GLU C 28 SHEET 3 C 5 VAL D 107 ASP D 116 -1 O LEU D 110 N LEU C 20 SHEET 4 C 5 VAL D 90 ARG D 101 -1 N GLN D 100 O ASP D 108 SHEET 5 C 5 PHE D 77 VAL D 84 -1 N PHE D 77 O ASN D 97 SHEET 1 D 5 PHE C 77 VAL C 84 0 SHEET 2 D 5 VAL C 90 ARG C 101 -1 O LEU C 93 N TYR C 81 SHEET 3 D 5 VAL C 107 ASP C 116 -1 O TRP C 111 N HIS C 98 SHEET 4 D 5 GLY D 16 HIS D 21 -1 O LEU D 20 N LEU C 110 SHEET 5 D 5 LEU D 27 TRP D 29 -1 O GLU D 28 N VAL D 19 LINK C HIS A 21 N MSE A 22 1555 1555 1.33 LINK C MSE A 22 N GLU A 23 1555 1555 1.33 LINK C ASP A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N THR A 118 1555 1555 1.33 LINK C HIS B 21 N MSE B 22 1555 1555 1.33 LINK C MSE B 22 N GLU B 23 1555 1555 1.32 LINK C ASP B 116 N MSE B 117 1555 1555 1.33 LINK C MSE B 117 N THR B 118 1555 1555 1.32 LINK C HIS C 21 N MSE C 22 1555 1555 1.32 LINK C MSE C 22 N GLU C 23 1555 1555 1.32 LINK C ASP C 116 N MSE C 117 1555 1555 1.33 LINK C MSE C 117 N THR C 118 1555 1555 1.33 LINK C HIS D 21 N MSE D 22 1555 1555 1.33 LINK C MSE D 22 N GLU D 23 1555 1555 1.33 LINK C ASP D 116 N MSE D 117 1555 1555 1.33 LINK C MSE D 117 N THR D 118 1555 1555 1.33 SITE 1 AC1 5 GLU A 95 TRP B 18 LEU B 20 TRP B 29 SITE 2 AC1 5 TYR B 51 SITE 1 AC2 7 TRP A 18 LEU A 27 TRP A 29 TYR A 51 SITE 2 AC2 7 TYR B 81 GLU B 95 VAL B 114 SITE 1 AC3 3 PRO B 76 ARG B 96 HIS B 98 SITE 1 AC4 3 ARG C 96 HIS C 98 ARG D 96 SITE 1 AC5 1 ARG C 75 SITE 1 AC6 5 GLU C 95 TRP D 18 LEU D 27 TRP D 29 SITE 2 AC6 5 TYR D 51 SITE 1 AC7 5 TRP C 18 LEU C 27 TRP C 29 TYR D 81 SITE 2 AC7 5 GLU D 95 SITE 1 AC8 2 HIS D 70 ARG D 75 CRYST1 60.570 65.527 123.423 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015261 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008102 0.00000