HEADER HYDROLASE 17-JUN-10 3NJF TITLE Y26F MUTANT OF SO1698 PROTEIN, AN ASPARTIC PEPTIDASE FROM SHEWANELLA TITLE 2 ONEIDENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN 1-116; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEPTIDASE; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: C-TERMINAL DOMAIN 117-125; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 70863; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: SO_1698; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 13 ORGANISM_TAXID: 70863; SOURCE 14 STRAIN: MR-1; SOURCE 15 GENE: SO_1698; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, ASPARTIC PEPTIDASE, AUTOCATALYSIS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,R.MULLIGAN,M.BARGASSA,F.COLLART,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 06-SEP-23 3NJF 1 SEQADV LINK REVDAT 4 08-NOV-17 3NJF 1 REMARK REVDAT 3 31-OCT-12 3NJF 1 LINK REVDAT 2 10-OCT-12 3NJF 1 JRNL VERSN REVDAT 1 07-JUL-10 3NJF 0 JRNL AUTH J.OSIPIUK,R.MULLIGAN,M.BARGASSA,J.E.HAMILTON,M.A.CUNNINGHAM, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL CHARACTERIZATION OF MEMBER OF DUF1888 PROTEIN FAMILY, JRNL TITL 2 SELF-CLEAVING AND SELF-ASSEMBLING ENDOPEPTIDASE. JRNL REF J.BIOL.CHEM. V. 287 19452 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22493430 JRNL DOI 10.1074/JBC.M112.358069 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 12905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 642 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 913 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.4660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1794 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -0.78000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.360 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.268 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.520 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1860 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1186 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2542 ; 1.667 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2962 ; 0.940 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 246 ; 6.630 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;43.323 ;27.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 312 ;17.841 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 8.527 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 320 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2060 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 326 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1194 ; 0.794 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 494 ; 0.133 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1958 ; 1.466 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 666 ; 1.934 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 578 ; 3.004 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4672 21.4073 -0.5434 REMARK 3 T TENSOR REMARK 3 T11: 0.1321 T22: 0.0294 REMARK 3 T33: 0.1228 T12: -0.0036 REMARK 3 T13: -0.0104 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 1.0774 L22: 0.2497 REMARK 3 L33: 1.1056 L12: -0.1857 REMARK 3 L13: -0.1440 L23: 0.2521 REMARK 3 S TENSOR REMARK 3 S11: -0.0408 S12: 0.0454 S13: 0.1606 REMARK 3 S21: -0.0470 S22: 0.0005 S23: -0.0322 REMARK 3 S31: -0.1175 S32: -0.0280 S33: 0.0403 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 117 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3358 32.2748 8.5767 REMARK 3 T TENSOR REMARK 3 T11: 0.3679 T22: 0.0277 REMARK 3 T33: 0.1951 T12: 0.0895 REMARK 3 T13: -0.0476 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: -5.0990 L22: 12.0296 REMARK 3 L33: -3.6055 L12: 1.6134 REMARK 3 L13: 5.6064 L23: -1.3531 REMARK 3 S TENSOR REMARK 3 S11: -0.1525 S12: 0.8192 S13: 0.6544 REMARK 3 S21: 0.9717 S22: -0.1679 S23: -0.5152 REMARK 3 S31: -0.5169 S32: -0.3385 S33: 0.3204 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 116 REMARK 3 ORIGIN FOR THE GROUP (A): -18.7865 10.2807 7.8500 REMARK 3 T TENSOR REMARK 3 T11: 0.0441 T22: 0.1119 REMARK 3 T33: 0.1146 T12: 0.0382 REMARK 3 T13: 0.0308 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.3382 L22: 1.1268 REMARK 3 L33: 1.2942 L12: 0.1185 REMARK 3 L13: 0.1198 L23: -0.0711 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: -0.0661 S13: 0.0491 REMARK 3 S21: 0.0333 S22: -0.0017 S23: 0.1526 REMARK 3 S31: -0.0876 S32: -0.1000 S33: 0.0277 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 117 D 124 REMARK 3 ORIGIN FOR THE GROUP (A): -27.2345 17.2426 -1.1577 REMARK 3 T TENSOR REMARK 3 T11: 0.1821 T22: 0.2040 REMARK 3 T33: 0.1686 T12: 0.1534 REMARK 3 T13: -0.0458 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 5.6548 L22: -7.2899 REMARK 3 L33: -1.4324 L12: -2.0598 REMARK 3 L13: -4.2524 L23: 3.9399 REMARK 3 S TENSOR REMARK 3 S11: 0.5333 S12: 0.5696 S13: -0.0381 REMARK 3 S21: 0.2407 S22: -0.6685 S23: 0.4725 REMARK 3 S31: -0.5403 S32: -0.2761 S33: 0.1352 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3NJF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13378 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 31.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.67600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3N55 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG-3000, 0.1 M SODIUM/POTASSIUM REMARK 280 PHOSPHATE, PH 6.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.08300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.91543 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.60800 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 50.08300 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 28.91543 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.60800 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 50.08300 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 28.91543 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.60800 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.83087 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 67.21600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 57.83087 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 67.21600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 57.83087 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.21600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -129.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 4 REMARK 465 GLN B 124 REMARK 465 ASN B 125 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 PHE C 2 REMARK 465 ALA C 3 REMARK 465 PRO C 4 REMARK 465 GLN D 124 REMARK 465 ASN D 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS C 98 CA ASP C 116 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 67 66.73 -119.40 REMARK 500 THR C 67 70.65 -117.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N55 RELATED DB: PDB REMARK 900 WILD-TYPE SO1698 PROTEIN, AN ASPARTIC PEPTIDASE FROM SHEWANELLA REMARK 900 ONEIDENSIS. REMARK 900 RELATED ID: 3NJG RELATED DB: PDB REMARK 900 RELATED ID: 3NJH RELATED DB: PDB REMARK 900 RELATED ID: 3NJI RELATED DB: PDB REMARK 900 RELATED ID: 3NJJ RELATED DB: PDB REMARK 900 RELATED ID: 3NJK RELATED DB: PDB REMARK 900 RELATED ID: 3NJL RELATED DB: PDB REMARK 900 RELATED ID: 3NJM RELATED DB: PDB REMARK 900 RELATED ID: 3NJN RELATED DB: PDB REMARK 900 RELATED ID: APC83618 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CHAIN-B PEPTIDE IS A PRODUCT OF AUTOCATALYTIC CLEAVAGE DURING REMARK 999 CRYSTALLIZATION DBREF 3NJF A 1 116 UNP Q8EGA7 Q8EGA7_SHEON 1 116 DBREF 3NJF B 117 125 UNP Q8EGA7 Q8EGA7_SHEON 117 125 DBREF 3NJF C 1 116 UNP Q8EGA7 Q8EGA7_SHEON 1 116 DBREF 3NJF D 117 125 UNP Q8EGA7 Q8EGA7_SHEON 117 125 SEQADV 3NJF SER A -2 UNP Q8EGA7 EXPRESSION TAG SEQADV 3NJF ASN A -1 UNP Q8EGA7 EXPRESSION TAG SEQADV 3NJF ALA A 0 UNP Q8EGA7 EXPRESSION TAG SEQADV 3NJF PHE A 26 UNP Q8EGA7 TYR 26 ENGINEERED MUTATION SEQADV 3NJF SER C -2 UNP Q8EGA7 EXPRESSION TAG SEQADV 3NJF ASN C -1 UNP Q8EGA7 EXPRESSION TAG SEQADV 3NJF ALA C 0 UNP Q8EGA7 EXPRESSION TAG SEQADV 3NJF PHE C 26 UNP Q8EGA7 TYR 26 ENGINEERED MUTATION SEQRES 1 A 119 SER ASN ALA MET PHE ALA PRO GLN GLY LEU ALA GLN PHE SEQRES 2 A 119 ILE LYS VAL ASN VAL THR LEU GLU ASN GLY GLU PRO VAL SEQRES 3 A 119 PHE ILE PHE THR ASP ALA ASN GLY GLN VAL CYS GLN GLY SEQRES 4 A 119 ASP ILE THR VAL THR GLN ALA GLY THR ILE THR TYR LEU SEQRES 5 A 119 LEU ASN ASP GLN THR LEU LYS GLY LEU LYS PHE VAL GLY SEQRES 6 A 119 VAL GLY PHE VAL THR PRO PHE ASP GLY ILE ILE ASP ALA SEQRES 7 A 119 VAL THR ILE SER SER ASP GLY MET LEU VAL GLN LEU VAL SEQRES 8 A 119 ASP LEU ASP LYS THR PRO GLY THR THR LYS PHE GLN PHE SEQRES 9 A 119 VAL LEU SER ASN THR ALA ASN THR LEU LEU VAL LEU SER SEQRES 10 A 119 PRO ASP SEQRES 1 B 9 PRO GLN ILE ILE ASN ARG PRO GLN ASN SEQRES 1 C 119 SER ASN ALA MET PHE ALA PRO GLN GLY LEU ALA GLN PHE SEQRES 2 C 119 ILE LYS VAL ASN VAL THR LEU GLU ASN GLY GLU PRO VAL SEQRES 3 C 119 PHE ILE PHE THR ASP ALA ASN GLY GLN VAL CYS GLN GLY SEQRES 4 C 119 ASP ILE THR VAL THR GLN ALA GLY THR ILE THR TYR LEU SEQRES 5 C 119 LEU ASN ASP GLN THR LEU LYS GLY LEU LYS PHE VAL GLY SEQRES 6 C 119 VAL GLY PHE VAL THR PRO PHE ASP GLY ILE ILE ASP ALA SEQRES 7 C 119 VAL THR ILE SER SER ASP GLY MET LEU VAL GLN LEU VAL SEQRES 8 C 119 ASP LEU ASP LYS THR PRO GLY THR THR LYS PHE GLN PHE SEQRES 9 C 119 VAL LEU SER ASN THR ALA ASN THR LEU LEU VAL LEU SER SEQRES 10 C 119 PRO ASP SEQRES 1 D 9 PRO GLN ILE ILE ASN ARG PRO GLN ASN FORMUL 5 HOH *70(H2 O) SHEET 1 A12 VAL A 33 CYS A 34 0 SHEET 2 A12 GLU A 21 THR A 27 -1 N PHE A 26 O CYS A 34 SHEET 3 A12 GLY A 6 GLU A 18 -1 N ASN A 14 O ILE A 25 SHEET 4 A12 GLY A 44 ASP A 52 1 O ASN A 51 N VAL A 13 SHEET 5 A12 LEU A 84 ASP A 89 -1 O VAL A 85 N TYR A 48 SHEET 6 A12 ALA A 75 ILE A 78 -1 N THR A 77 O GLN A 86 SHEET 7 A12 ALA C 75 ILE C 78 -1 O ILE C 78 N ILE A 78 SHEET 8 A12 LEU C 84 ASP C 89 -1 O GLN C 86 N THR C 77 SHEET 9 A12 GLY C 44 ASP C 52 -1 N GLY C 44 O ASP C 89 SHEET 10 A12 GLY C 6 GLU C 18 1 N VAL C 13 O ASN C 51 SHEET 11 A12 GLU C 21 THR C 27 -1 O ILE C 25 N ASN C 14 SHEET 12 A12 VAL C 33 CYS C 34 -1 O CYS C 34 N PHE C 26 SHEET 1 B 6 VAL A 33 CYS A 34 0 SHEET 2 B 6 GLU A 21 THR A 27 -1 N PHE A 26 O CYS A 34 SHEET 3 B 6 GLY A 6 GLU A 18 -1 N ASN A 14 O ILE A 25 SHEET 4 B 6 GLY C 6 GLU C 18 -1 O GLY C 6 N ALA A 8 SHEET 5 B 6 GLU C 21 THR C 27 -1 O ILE C 25 N ASN C 14 SHEET 6 B 6 VAL C 33 CYS C 34 -1 O CYS C 34 N PHE C 26 SHEET 1 C 4 ILE A 38 VAL A 40 0 SHEET 2 C 4 GLN B 118 ASN B 121 1 O ILE B 120 N VAL A 40 SHEET 3 C 4 GLY A 95 SER A 104 -1 N THR A 97 O ILE B 119 SHEET 4 C 4 LYS A 59 PHE A 65 -1 N GLY A 64 O GLN A 100 SHEET 1 D 4 ILE A 38 VAL A 40 0 SHEET 2 D 4 GLN B 118 ASN B 121 1 O ILE B 120 N VAL A 40 SHEET 3 D 4 GLY A 95 SER A 104 -1 N THR A 97 O ILE B 119 SHEET 4 D 4 VAL A 112 LEU A 113 -1 O VAL A 112 N LEU A 103 SHEET 1 E 4 ILE C 38 VAL C 40 0 SHEET 2 E 4 GLN D 118 ASN D 121 1 O ILE D 120 N VAL C 40 SHEET 3 E 4 GLY C 95 SER C 104 -1 N THR C 97 O ILE D 119 SHEET 4 E 4 LYS C 59 PHE C 65 -1 N GLY C 64 O GLN C 100 SHEET 1 F 4 ILE C 38 VAL C 40 0 SHEET 2 F 4 GLN D 118 ASN D 121 1 O ILE D 120 N VAL C 40 SHEET 3 F 4 GLY C 95 SER C 104 -1 N THR C 97 O ILE D 119 SHEET 4 F 4 VAL C 112 LEU C 113 -1 O VAL C 112 N LEU C 103 LINK NZ LYS A 98 C ASP A 116 1555 1555 1.56 LINK NZ LYS C 98 C ASP C 116 1555 1555 1.38 CRYST1 100.166 100.166 100.824 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009983 0.005764 0.000000 0.00000 SCALE2 0.000000 0.011528 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009918 0.00000