HEADER HYDROLASE 17-JUN-10 3NJI TITLE S114A MUTANT OF SO1698 PROTEIN, AN ASPARTIC PEPTIDASE FROM SHEWANELLA TITLE 2 ONEIDENSIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPTIDASE; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: C-TERMINAL DOMAIN 117-125; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 70863; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: SO_1698; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 13 ORGANISM_TAXID: 70863; SOURCE 14 STRAIN: MR-1; SOURCE 15 GENE: SO_1698; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, ASPARTIC PEPTIDASE, AUTOCATALYSIS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,R.MULLIGAN,M.BARGASSA,F.COLLART,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 06-SEP-23 3NJI 1 SEQADV REVDAT 3 08-NOV-17 3NJI 1 REMARK REVDAT 2 10-OCT-12 3NJI 1 JRNL VERSN REVDAT 1 22-SEP-10 3NJI 0 JRNL AUTH J.OSIPIUK,R.MULLIGAN,M.BARGASSA,J.E.HAMILTON,M.A.CUNNINGHAM, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL CHARACTERIZATION OF MEMBER OF DUF1888 PROTEIN FAMILY, JRNL TITL 2 SELF-CLEAVING AND SELF-ASSEMBLING ENDOPEPTIDASE. JRNL REF J.BIOL.CHEM. V. 287 19452 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22493430 JRNL DOI 10.1074/JBC.M112.358069 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 17729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 907 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1065 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 955 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.535 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1044 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 681 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1438 ; 1.609 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1710 ; 0.892 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 144 ; 6.523 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 44 ;41.423 ;27.045 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 181 ;16.491 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;19.525 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 180 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1160 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 178 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 663 ; 1.010 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 268 ; 0.294 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1099 ; 1.700 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 381 ; 2.374 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 330 ; 3.831 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): -18.6857 10.1709 54.2317 REMARK 3 T TENSOR REMARK 3 T11: 0.0203 T22: 0.0571 REMARK 3 T33: 0.0789 T12: 0.0223 REMARK 3 T13: 0.0104 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.8567 L22: 1.1667 REMARK 3 L33: 1.4545 L12: -0.1803 REMARK 3 L13: 0.2136 L23: 0.0619 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.0009 S13: 0.1371 REMARK 3 S21: 0.0044 S22: -0.0354 S23: 0.2007 REMARK 3 S31: -0.0962 S32: -0.1200 S33: 0.0330 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): -27.6229 17.1693 44.8112 REMARK 3 T TENSOR REMARK 3 T11: 0.2264 T22: 0.2780 REMARK 3 T33: 0.2835 T12: 0.0927 REMARK 3 T13: -0.0619 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 5.7783 L22: 14.1024 REMARK 3 L33: 15.0770 L12: -1.7237 REMARK 3 L13: -3.7764 L23: -3.1681 REMARK 3 S TENSOR REMARK 3 S11: -0.0806 S12: -0.0284 S13: 0.4232 REMARK 3 S21: 0.7271 S22: 0.2254 S23: 0.9680 REMARK 3 S31: -0.5899 S32: -1.2488 S33: -0.1448 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 117 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): -27.4121 17.4280 44.9583 REMARK 3 T TENSOR REMARK 3 T11: 0.5788 T22: 0.7092 REMARK 3 T33: 1.2834 T12: 0.5512 REMARK 3 T13: -0.1003 T23: -0.2322 REMARK 3 L TENSOR REMARK 3 L11: 23.8354 L22: 48.4833 REMARK 3 L33: 31.9731 L12: -25.2083 REMARK 3 L13: 22.3321 L23: -8.0908 REMARK 3 S TENSOR REMARK 3 S11: 0.8988 S12: 2.4920 S13: -0.7999 REMARK 3 S21: -1.9863 S22: -3.2796 S23: 5.0559 REMARK 3 S31: -0.1646 S32: 1.7546 S33: 2.3808 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3NJI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000059907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17886 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.61300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3N55 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M AMMONIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 BUFFER, 1% PEG-3350, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 49.91650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.81930 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 33.26667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 49.91650 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 28.81930 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 33.26667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 49.91650 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 28.81930 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 33.26667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 49.91650 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 28.81930 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.26667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 49.91650 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 28.81930 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 33.26667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 49.91650 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 28.81930 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.26667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.63861 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 66.53333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 57.63861 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 66.53333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 57.63861 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 66.53333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 57.63861 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.53333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 57.63861 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 66.53333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 57.63861 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 66.53333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE AUTHORS STATE THAT THERE IS A PARTIAL HYDROLYSIS OF THE BOND REMARK 400 BETWEEN RESIDUES 116 AND 117. FOR RESIDUES 115-123, CONFORMER A REMARK 400 REPRESENTS UNCLEAVED PROTEIN WITH A BOND BETWEEN RESIDUES 116-117. REMARK 400 CONFORMER B REPRESENTS CLEAVED CHAIN AND THERE IS NO COVALENT BOND REMARK 400 BETWEEN RESIDUES A116 AND B117 DUE TO AUTOCATALYTIC CLEAVAGE DURING REMARK 400 CRYSTALLIZATION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 4 REMARK 465 GLN A 124 REMARK 465 ASN A 125 REMARK 465 GLN B 124 REMARK 465 ASN B 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 39 O HOH A 198 2.08 REMARK 500 OD2 ASP A 74 O HOH A 183 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 117 C - N - CD ANGL. DEV. = -15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3N55 RELATED DB: PDB REMARK 900 WILD-TYPE SO1698 PROTEIN, AN ASPARTIC PEPTIDASE FROM SHEWANELLA REMARK 900 ONEIDENSIS. REMARK 900 RELATED ID: 3NJF RELATED DB: PDB REMARK 900 RELATED ID: 3NJG RELATED DB: PDB REMARK 900 RELATED ID: 3NJH RELATED DB: PDB REMARK 900 RELATED ID: 3NJJ RELATED DB: PDB REMARK 900 RELATED ID: 3NJK RELATED DB: PDB REMARK 900 RELATED ID: 3NJL RELATED DB: PDB REMARK 900 RELATED ID: 3NJM RELATED DB: PDB REMARK 900 RELATED ID: 3NJN RELATED DB: PDB REMARK 900 RELATED ID: APC83618 RELATED DB: TARGETDB DBREF 3NJI A 1 125 UNP Q8EGA7 Q8EGA7_SHEON 1 125 DBREF 3NJI B 117 125 UNP Q8EGA7 Q8EGA7_SHEON 117 125 SEQADV 3NJI SER A -2 UNP Q8EGA7 EXPRESSION TAG SEQADV 3NJI ASN A -1 UNP Q8EGA7 EXPRESSION TAG SEQADV 3NJI ALA A 0 UNP Q8EGA7 EXPRESSION TAG SEQADV 3NJI ALA A 114 UNP Q8EGA7 SER 114 ENGINEERED MUTATION SEQRES 1 A 128 SER ASN ALA MET PHE ALA PRO GLN GLY LEU ALA GLN PHE SEQRES 2 A 128 ILE LYS VAL ASN VAL THR LEU GLU ASN GLY GLU PRO VAL SEQRES 3 A 128 PHE ILE TYR THR ASP ALA ASN GLY GLN VAL CYS GLN GLY SEQRES 4 A 128 ASP ILE THR VAL THR GLN ALA GLY THR ILE THR TYR LEU SEQRES 5 A 128 LEU ASN ASP GLN THR LEU LYS GLY LEU LYS PHE VAL GLY SEQRES 6 A 128 VAL GLY PHE VAL THR PRO PHE ASP GLY ILE ILE ASP ALA SEQRES 7 A 128 VAL THR ILE SER SER ASP GLY MET LEU VAL GLN LEU VAL SEQRES 8 A 128 ASP LEU ASP LYS THR PRO GLY THR THR LYS PHE GLN PHE SEQRES 9 A 128 VAL LEU SER ASN THR ALA ASN THR LEU LEU VAL LEU ALA SEQRES 10 A 128 PRO ASP PRO GLN ILE ILE ASN ARG PRO GLN ASN SEQRES 1 B 9 PRO GLN ILE ILE ASN ARG PRO GLN ASN FORMUL 3 HOH *104(H2 O) SHEET 1 A 6 VAL A 33 CYS A 34 0 SHEET 2 A 6 GLU A 21 THR A 27 -1 N TYR A 26 O CYS A 34 SHEET 3 A 6 LEU A 7 GLU A 18 -1 N ASN A 14 O ILE A 25 SHEET 4 A 6 GLY A 44 ASP A 52 1 O LEU A 49 N VAL A 13 SHEET 5 A 6 LEU A 84 ASP A 89 -1 O VAL A 85 N TYR A 48 SHEET 6 A 6 ALA A 75 ILE A 78 -1 N THR A 77 O GLN A 86 SHEET 1 B 4 ILE A 38 VAL A 40 0 SHEET 2 B 4 GLN A 118 ASN A 121 1 O ILE A 120 N VAL A 40 SHEET 3 B 4 GLY A 95 SER A 104 -1 N THR A 97 O ILE A 119 SHEET 4 B 4 VAL A 112 LEU A 113 -1 O VAL A 112 N LEU A 103 SHEET 1 C 4 GLN A 118 ASN A 121 0 SHEET 2 C 4 GLN B 118 ASN B 121 1 O ILE B 119 N ILE A 120 SHEET 3 C 4 GLY A 95 SER A 104 -1 O GLY A 95 N ASN B 121 SHEET 4 C 4 LYS A 59 PHE A 65 -1 N GLY A 64 O GLN A 100 CRYST1 99.833 99.833 99.800 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010017 0.005783 0.000000 0.00000 SCALE2 0.000000 0.011566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010020 0.00000