HEADER HORMONE RECEPTOR 17-JUN-10 3NJO TITLE X-RAY CRYSTAL STRUCTURE OF THE PYR1-PYRABACTIN A COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABSCISIC ACID RECEPTOR PYR1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PROTEIN PYRABACTIN RESISTANCE 1, ABI1-BINDING PROTEIN 6, COMPND 5 REGULATORY COMPONENTS OF ABA RECEPTOR 11; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: COLUMBIA; SOURCE 6 GENE: ABIP6, AT4G17870, PYR1, RCAR11, T6K21.50; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS START, ABA, PYR/PYL/RCAR, PLANT HORMONE, STRUCTURAL GENOMICS, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, PSI, CENTER FOR EUKARYOTIC STRUCTURAL KEYWDS 3 GENOMICS, CESG, HORMONE RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR E.S.BURGIE,C.A.BINGMAN,G.N.PHILLIPS JR.,F.C.PETERSON,B.F.VOLKMAN, AUTHOR 2 S.R.CUTLER,D.R.JENSEN,CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS AUTHOR 3 (CESG) REVDAT 6 06-SEP-23 3NJO 1 REMARK REVDAT 5 06-OCT-21 3NJO 1 REMARK SEQADV LINK REVDAT 4 08-NOV-17 3NJO 1 REMARK REVDAT 3 15-SEP-10 3NJO 1 JRNL REVDAT 2 25-AUG-10 3NJO 1 JRNL REVDAT 1 18-AUG-10 3NJO 0 JRNL AUTH F.C.PETERSON,E.S.BURGIE,S.Y.PARK,D.R.JENSEN,J.J.WEINER, JRNL AUTH 2 C.A.BINGMAN,C.E.CHANG,S.R.CUTLER,G.N.PHILLIPS,B.F.VOLKMAN JRNL TITL STRUCTURAL BASIS FOR SELECTIVE ACTIVATION OF ABA RECEPTORS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 1109 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20729860 JRNL DOI 10.1038/NSMB.1898 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 19707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.550 REMARK 3 FREE R VALUE TEST SET COUNT : 1882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0491 - 5.8043 0.89 1567 165 0.2528 0.2755 REMARK 3 2 5.8043 - 4.6114 0.89 1426 148 0.1884 0.2248 REMARK 3 3 4.6114 - 4.0298 0.93 1433 153 0.1598 0.1903 REMARK 3 4 4.0298 - 3.6619 0.88 1384 145 0.1990 0.2468 REMARK 3 5 3.6619 - 3.3997 0.89 1325 140 0.2058 0.2391 REMARK 3 6 3.3997 - 3.1995 0.95 1426 151 0.2211 0.2739 REMARK 3 7 3.1995 - 3.0394 0.96 1443 151 0.2270 0.2742 REMARK 3 8 3.0394 - 2.9072 0.95 1416 150 0.2223 0.2802 REMARK 3 9 2.9072 - 2.7953 0.93 1381 147 0.2445 0.3139 REMARK 3 10 2.7953 - 2.6989 0.90 1347 144 0.2528 0.3256 REMARK 3 11 2.6989 - 2.6146 0.88 1253 136 0.2783 0.3403 REMARK 3 12 2.6146 - 2.5399 0.84 1257 131 0.2660 0.3480 REMARK 3 13 2.5399 - 2.4730 0.78 1167 121 0.2951 0.3577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 45.55 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.63980 REMARK 3 B22 (A**2) : 5.63980 REMARK 3 B33 (A**2) : -11.27970 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.026 4403 REMARK 3 ANGLE : 1.572 5968 REMARK 3 CHIRALITY : 0.130 667 REMARK 3 PLANARITY : 0.010 757 REMARK 3 DIHEDRAL : 17.951 1615 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 6:300) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8608 -15.1199 14.2856 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.2115 REMARK 3 T33: 0.0922 T12: 0.0258 REMARK 3 T13: -0.0083 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 1.8986 L22: 1.6280 REMARK 3 L33: 3.1237 L12: -0.1235 REMARK 3 L13: 0.2784 L23: -0.8448 REMARK 3 S TENSOR REMARK 3 S11: 0.1283 S12: 0.2237 S13: -0.0057 REMARK 3 S21: 0.1889 S22: 0.0471 S23: -0.0800 REMARK 3 S31: -0.0420 S32: 0.1539 S33: -0.1324 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 4:300) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3765 -3.6302 15.0198 REMARK 3 T TENSOR REMARK 3 T11: 0.0760 T22: 0.2893 REMARK 3 T33: 0.0987 T12: -0.1026 REMARK 3 T13: 0.0238 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.6715 L22: 1.1209 REMARK 3 L33: 4.0367 L12: -0.2208 REMARK 3 L13: -0.7480 L23: 0.2119 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: 0.0526 S13: 0.0226 REMARK 3 S21: 0.0513 S22: -0.0566 S23: 0.0039 REMARK 3 S31: 0.1202 S32: -0.4707 S33: 0.0558 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESID 3:300) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6913 -7.2460 45.0031 REMARK 3 T TENSOR REMARK 3 T11: 0.0504 T22: 0.1300 REMARK 3 T33: 0.1109 T12: 0.0576 REMARK 3 T13: 0.0242 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.4471 L22: 1.8266 REMARK 3 L33: 4.6723 L12: -0.1718 REMARK 3 L13: -0.1918 L23: 0.0296 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: -0.0761 S13: 0.0474 REMARK 3 S21: -0.0118 S22: 0.0240 S23: -0.1244 REMARK 3 S31: 0.1398 S32: 0.1307 S33: -0.0243 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059913. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0781 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21108 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3JRS, SUBUNIT A ONLY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION 100 NL- 20 MM NACL, 2 REMARK 280 MM DTT 20 MM TRIS, PH 7.6, PRECIPITANT SOLUTION 100 NL- 2.0 M REMARK 280 AMMONIUM SULFATE, 100 MM BISTRIS, PH 5.5, CRYOPROTECTANT- REMARK 280 FOMBLIN 06/6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 175.86633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 351.73267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 263.79950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 439.66583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.93317 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 175.86633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 351.73267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 439.66583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 263.79950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 87.93317 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.93317 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 211 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 LEU A 5 REMARK 465 GLU A 149 REMARK 465 GLY A 150 REMARK 465 ASN A 151 REMARK 465 SER A 152 REMARK 465 GLU A 153 REMARK 465 ASP A 154 REMARK 465 ASN A 181 REMARK 465 SER A 182 REMARK 465 GLY A 183 REMARK 465 ASP A 184 REMARK 465 GLY A 185 REMARK 465 SER A 186 REMARK 465 GLY A 187 REMARK 465 SER A 188 REMARK 465 GLN A 189 REMARK 465 VAL A 190 REMARK 465 THR A 191 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 ASN B 181 REMARK 465 SER B 182 REMARK 465 GLY B 183 REMARK 465 ASP B 184 REMARK 465 GLY B 185 REMARK 465 SER B 186 REMARK 465 GLY B 187 REMARK 465 SER B 188 REMARK 465 GLN B 189 REMARK 465 VAL B 190 REMARK 465 THR B 191 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 PRO C 148 REMARK 465 GLU C 149 REMARK 465 GLY C 150 REMARK 465 ASN C 151 REMARK 465 SER C 152 REMARK 465 GLU C 153 REMARK 465 ASP C 154 REMARK 465 ASN C 181 REMARK 465 SER C 182 REMARK 465 GLY C 183 REMARK 465 ASP C 184 REMARK 465 GLY C 185 REMARK 465 SER C 186 REMARK 465 GLY C 187 REMARK 465 SER C 188 REMARK 465 GLN C 189 REMARK 465 VAL C 190 REMARK 465 THR C 191 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 206 O HOH B 203 8555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 148 C - N - CD ANGL. DEV. = -13.4 DEGREES REMARK 500 PRO B 148 CA - N - CD ANGL. DEV. = -13.0 DEGREES REMARK 500 GLU C 19 N - CA - CB ANGL. DEV. = -10.8 DEGREES REMARK 500 ASP C 155 CB - CA - C ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 61 30.36 81.48 REMARK 500 VAL A 67 -100.39 -103.32 REMARK 500 GLU A 68 145.45 -174.80 REMARK 500 ASN A 70 41.01 -104.12 REMARK 500 ILE A 84 166.00 -45.46 REMARK 500 SER A 88 -73.45 -56.10 REMARK 500 ALA A 89 150.90 -45.59 REMARK 500 GLU A 114 56.72 -101.92 REMARK 500 LEU A 117 78.40 -67.22 REMARK 500 LYS A 131 -157.27 -134.09 REMARK 500 GLU A 132 106.31 -52.28 REMARK 500 ASN A 133 -51.79 67.74 REMARK 500 TRP A 136 -167.02 -110.79 REMARK 500 ARG B 51 79.96 -66.49 REMARK 500 ILE B 84 164.52 -46.88 REMARK 500 ASN B 90 -72.59 -108.35 REMARK 500 ARG B 104 48.39 70.91 REMARK 500 GLU B 132 -102.62 55.55 REMARK 500 ARG C 51 81.67 -68.41 REMARK 500 ASN C 70 16.74 59.08 REMARK 500 PHE C 71 131.00 -38.24 REMARK 500 SER C 88 -71.65 -49.15 REMARK 500 LEU C 99 116.62 -161.90 REMARK 500 LEU C 117 77.91 -105.30 REMARK 500 GLU C 132 -137.55 63.41 REMARK 500 ALA C 179 46.80 -86.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 PYV C 300 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 193 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 88 OG REMARK 620 2 HOH B 202 O 107.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYV A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P2M B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYV C 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 192 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NJ0 RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF THE PY12-PYRABACTIN A COMPLEX REMARK 900 RELATED ID: 3NJ1 RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF THE PY12(V114I)-PYRABACTIN A COMPLEX REMARK 900 RELATED ID: GO.20814 RELATED DB: TARGETDB DBREF 3NJO A 1 191 UNP O49686 PYR1_ARATH 1 191 DBREF 3NJO B 1 191 UNP O49686 PYR1_ARATH 1 191 DBREF 3NJO C 1 191 UNP O49686 PYR1_ARATH 1 191 SEQADV 3NJO GLY A -2 UNP O49686 EXPRESSION TAG SEQADV 3NJO SER A -1 UNP O49686 EXPRESSION TAG SEQADV 3NJO HIS A 0 UNP O49686 EXPRESSION TAG SEQADV 3NJO SER A 88 UNP O49686 PRO 88 ENGINEERED MUTATION SEQADV 3NJO GLY B -2 UNP O49686 EXPRESSION TAG SEQADV 3NJO SER B -1 UNP O49686 EXPRESSION TAG SEQADV 3NJO HIS B 0 UNP O49686 EXPRESSION TAG SEQADV 3NJO SER B 88 UNP O49686 PRO 88 ENGINEERED MUTATION SEQADV 3NJO GLY C -2 UNP O49686 EXPRESSION TAG SEQADV 3NJO SER C -1 UNP O49686 EXPRESSION TAG SEQADV 3NJO HIS C 0 UNP O49686 EXPRESSION TAG SEQADV 3NJO SER C 88 UNP O49686 PRO 88 ENGINEERED MUTATION SEQRES 1 A 194 GLY SER HIS MET PRO SER GLU LEU THR PRO GLU GLU ARG SEQRES 2 A 194 SER GLU LEU LYS ASN SER ILE ALA GLU PHE HIS THR TYR SEQRES 3 A 194 GLN LEU ASP PRO GLY SER CYS SER SER LEU HIS ALA GLN SEQRES 4 A 194 ARG ILE HIS ALA PRO PRO GLU LEU VAL TRP SER ILE VAL SEQRES 5 A 194 ARG ARG PHE ASP LYS PRO GLN THR TYR LYS HIS PHE ILE SEQRES 6 A 194 LYS SER CYS SER VAL GLU GLN ASN PHE GLU MET ARG VAL SEQRES 7 A 194 GLY CYS THR ARG ASP VAL ILE VAL ILE SER GLY LEU SER SEQRES 8 A 194 ALA ASN THR SER THR GLU ARG LEU ASP ILE LEU ASP ASP SEQRES 9 A 194 GLU ARG ARG VAL THR GLY PHE SER ILE ILE GLY GLY GLU SEQRES 10 A 194 HIS ARG LEU THR ASN TYR LYS SER VAL THR THR VAL HIS SEQRES 11 A 194 ARG PHE GLU LYS GLU ASN ARG ILE TRP THR VAL VAL LEU SEQRES 12 A 194 GLU SER TYR VAL VAL ASP MET PRO GLU GLY ASN SER GLU SEQRES 13 A 194 ASP ASP THR ARG MET PHE ALA ASP THR VAL VAL LYS LEU SEQRES 14 A 194 ASN LEU GLN LYS LEU ALA THR VAL ALA GLU ALA MET ALA SEQRES 15 A 194 ARG ASN SER GLY ASP GLY SER GLY SER GLN VAL THR SEQRES 1 B 194 GLY SER HIS MET PRO SER GLU LEU THR PRO GLU GLU ARG SEQRES 2 B 194 SER GLU LEU LYS ASN SER ILE ALA GLU PHE HIS THR TYR SEQRES 3 B 194 GLN LEU ASP PRO GLY SER CYS SER SER LEU HIS ALA GLN SEQRES 4 B 194 ARG ILE HIS ALA PRO PRO GLU LEU VAL TRP SER ILE VAL SEQRES 5 B 194 ARG ARG PHE ASP LYS PRO GLN THR TYR LYS HIS PHE ILE SEQRES 6 B 194 LYS SER CYS SER VAL GLU GLN ASN PHE GLU MET ARG VAL SEQRES 7 B 194 GLY CYS THR ARG ASP VAL ILE VAL ILE SER GLY LEU SER SEQRES 8 B 194 ALA ASN THR SER THR GLU ARG LEU ASP ILE LEU ASP ASP SEQRES 9 B 194 GLU ARG ARG VAL THR GLY PHE SER ILE ILE GLY GLY GLU SEQRES 10 B 194 HIS ARG LEU THR ASN TYR LYS SER VAL THR THR VAL HIS SEQRES 11 B 194 ARG PHE GLU LYS GLU ASN ARG ILE TRP THR VAL VAL LEU SEQRES 12 B 194 GLU SER TYR VAL VAL ASP MET PRO GLU GLY ASN SER GLU SEQRES 13 B 194 ASP ASP THR ARG MET PHE ALA ASP THR VAL VAL LYS LEU SEQRES 14 B 194 ASN LEU GLN LYS LEU ALA THR VAL ALA GLU ALA MET ALA SEQRES 15 B 194 ARG ASN SER GLY ASP GLY SER GLY SER GLN VAL THR SEQRES 1 C 194 GLY SER HIS MET PRO SER GLU LEU THR PRO GLU GLU ARG SEQRES 2 C 194 SER GLU LEU LYS ASN SER ILE ALA GLU PHE HIS THR TYR SEQRES 3 C 194 GLN LEU ASP PRO GLY SER CYS SER SER LEU HIS ALA GLN SEQRES 4 C 194 ARG ILE HIS ALA PRO PRO GLU LEU VAL TRP SER ILE VAL SEQRES 5 C 194 ARG ARG PHE ASP LYS PRO GLN THR TYR LYS HIS PHE ILE SEQRES 6 C 194 LYS SER CYS SER VAL GLU GLN ASN PHE GLU MET ARG VAL SEQRES 7 C 194 GLY CYS THR ARG ASP VAL ILE VAL ILE SER GLY LEU SER SEQRES 8 C 194 ALA ASN THR SER THR GLU ARG LEU ASP ILE LEU ASP ASP SEQRES 9 C 194 GLU ARG ARG VAL THR GLY PHE SER ILE ILE GLY GLY GLU SEQRES 10 C 194 HIS ARG LEU THR ASN TYR LYS SER VAL THR THR VAL HIS SEQRES 11 C 194 ARG PHE GLU LYS GLU ASN ARG ILE TRP THR VAL VAL LEU SEQRES 12 C 194 GLU SER TYR VAL VAL ASP MET PRO GLU GLY ASN SER GLU SEQRES 13 C 194 ASP ASP THR ARG MET PHE ALA ASP THR VAL VAL LYS LEU SEQRES 14 C 194 ASN LEU GLN LYS LEU ALA THR VAL ALA GLU ALA MET ALA SEQRES 15 C 194 ARG ASN SER GLY ASP GLY SER GLY SER GLN VAL THR HET PYV A 300 31 HET SO4 A 192 5 HET NA A 193 1 HET P2M B 300 21 HET CL B 192 1 HET PYV C 300 44 HET SO4 C 192 5 HETNAM PYV 4-BROMO-N-(PYRIDIN-2-YLMETHYL)NAPHTHALENE-1-SULFONAMIDE HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM P2M N-(PYRIDIN-2-YLMETHYL)NAPHTHALENE-1-SULFONAMIDE HETNAM CL CHLORIDE ION HETSYN PYV PYRABACTIN FORMUL 4 PYV 2(C16 H13 BR N2 O2 S) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 NA NA 1+ FORMUL 7 P2M C16 H14 N2 O2 S FORMUL 8 CL CL 1- FORMUL 11 HOH *68(H2 O) HELIX 1 1 THR A 6 HIS A 21 1 16 HELIX 2 2 PRO A 41 ARG A 50 1 10 HELIX 3 3 LYS A 54 TYR A 58 5 5 HELIX 4 4 ASP A 155 ARG A 180 1 26 HELIX 5 5 THR B 6 HIS B 21 1 16 HELIX 6 6 PRO B 41 ARG B 51 1 11 HELIX 7 7 LYS B 54 TYR B 58 5 5 HELIX 8 8 ASN B 151 ASP B 155 5 5 HELIX 9 9 MET B 158 ARG B 180 1 23 HELIX 10 10 THR C 6 LEU C 13 1 8 HELIX 11 11 LEU C 13 HIS C 21 1 9 HELIX 12 12 PRO C 41 ARG C 50 1 10 HELIX 13 13 LYS C 54 TYR C 58 5 5 HELIX 14 14 ASP C 155 MET C 178 1 24 SHEET 1 A14 ILE A 62 SER A 66 0 SHEET 2 A14 THR A 78 VAL A 83 -1 O ASP A 80 N SER A 66 SHEET 3 A14 THR A 91 ASP A 100 -1 O SER A 92 N VAL A 81 SHEET 4 A14 VAL A 105 GLY A 113 -1 O ILE A 111 N THR A 93 SHEET 5 A14 LYS A 121 GLU A 130 -1 O THR A 124 N THR A 106 SHEET 6 A14 ILE A 135 ASP A 146 -1 O TRP A 136 N PHE A 129 SHEET 7 A14 SER A 29 ILE A 38 -1 N ILE A 38 O THR A 137 SHEET 8 A14 SER C 29 ILE C 38 -1 O SER C 31 N SER A 31 SHEET 9 A14 ARG C 134 ASP C 146 -1 O THR C 137 N ILE C 38 SHEET 10 A14 LYS C 121 LYS C 131 -1 N LYS C 131 O ARG C 134 SHEET 11 A14 VAL C 105 GLY C 113 -1 N THR C 106 O THR C 124 SHEET 12 A14 THR C 91 ASP C 100 -1 N ARG C 95 O SER C 109 SHEET 13 A14 THR C 78 VAL C 83 -1 N VAL C 81 O SER C 92 SHEET 14 A14 ILE C 62 SER C 66 -1 N LYS C 63 O ILE C 82 SHEET 1 B 7 SER B 29 ILE B 38 0 SHEET 2 B 7 ARG B 134 ASP B 146 -1 O THR B 137 N ILE B 38 SHEET 3 B 7 LYS B 121 LYS B 131 -1 N LYS B 131 O ARG B 134 SHEET 4 B 7 VAL B 105 GLY B 112 -1 N THR B 106 O THR B 124 SHEET 5 B 7 THR B 91 ASP B 100 -1 N ASP B 97 O GLY B 107 SHEET 6 B 7 THR B 78 VAL B 83 -1 N VAL B 81 O SER B 92 SHEET 7 B 7 ILE B 62 SER B 66 -1 N SER B 64 O ILE B 82 LINK NA NA A 193 OG SER B 88 1555 1555 2.63 LINK NA NA A 193 O HOH B 202 1555 1555 2.55 SITE 1 AC1 10 LYS A 59 HIS A 60 PHE A 61 LEU A 87 SITE 2 AC1 10 SER A 92 GLU A 94 TYR A 120 VAL A 163 SITE 3 AC1 10 HOH A 216 HOH A 218 SITE 1 AC2 7 LYS A 59 HIS A 60 LYS A 170 HOH A 206 SITE 2 AC2 7 GLY B 150 ASN B 151 SER B 152 SITE 1 AC3 4 SER A 85 GLY A 86 SER B 88 HOH B 202 SITE 1 AC4 7 LYS B 59 ILE B 62 LEU B 87 SER B 92 SITE 2 AC4 7 GLU B 94 TYR B 120 VAL B 163 SITE 1 AC5 1 HIS B 60 SITE 1 AC6 11 ILE C 62 VAL C 81 LEU C 87 SER C 92 SITE 2 AC6 11 GLU C 94 LEU C 117 PHE C 159 VAL C 163 SITE 3 AC6 11 HOH C 219 HOH C 222 HOH C 223 SITE 1 AC7 2 HIS C 60 LYS C 170 CRYST1 60.307 60.307 527.599 90.00 90.00 120.00 P 61 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016582 0.009574 0.000000 0.00000 SCALE2 0.000000 0.019147 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001895 0.00000