HEADER PROTEIN TRANSPORT 21-JUN-10 3NKU TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF DRRA/SIDM FROM TITLE 2 LEGIONELLA PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DRRA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 9-218); COMPND 5 SYNONYM: SIDM; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 272624; SOURCE 4 STRAIN: PHILADELPHIA; SOURCE 5 GENE: DRRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POPIN-NHIS-3C KEYWDS POSTTRANSLATIONAL MODIFICATION, AMPYLATION, ADENYLYLATION, RAB1B, KEYWDS 2 RAB1, DRRA, SIDM, VESICULAR TRANSPORT, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.P.MUELLER,H.PETERS,W.BLANKENFELDT,R.S.GOODY,A.ITZEN REVDAT 2 15-SEP-10 3NKU 1 JRNL REVDAT 1 04-AUG-10 3NKU 0 JRNL AUTH M.P.MULLER,H.PETERS,J.BLUMER,W.BLANKENFELDT,R.S.GOODY, JRNL AUTH 2 A.ITZEN JRNL TITL THE LEGIONELLA EFFECTOR PROTEIN DRRA AMPYLATES THE MEMBRANE JRNL TITL 2 TRAFFIC REGULATOR RAB1B. JRNL REF SCIENCE V. 329 946 2010 JRNL REFN ISSN 0036-8075 JRNL PMID 20651120 JRNL DOI 10.1126/SCIENCE.1192276 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1129 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1601 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.1670 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2968 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.522 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3064 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2117 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4139 ; 1.708 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5170 ; 0.971 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 380 ; 5.736 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;36.563 ;25.811 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 552 ;17.315 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.885 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 451 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3384 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 562 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1891 ; 1.118 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 751 ; 0.307 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3053 ; 2.057 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1173 ; 3.632 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1082 ; 5.808 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1172 16.4765 35.8773 REMARK 3 T TENSOR REMARK 3 T11: 0.0945 T22: 0.1129 REMARK 3 T33: 0.0730 T12: 0.0241 REMARK 3 T13: -0.0516 T23: 0.0449 REMARK 3 L TENSOR REMARK 3 L11: 2.0910 L22: 2.7701 REMARK 3 L33: 1.6120 L12: 1.2060 REMARK 3 L13: 0.4269 L23: 0.5541 REMARK 3 S TENSOR REMARK 3 S11: 0.0703 S12: -0.2159 S13: -0.1201 REMARK 3 S21: 0.1208 S22: 0.1751 S23: 0.0101 REMARK 3 S31: 0.1148 S32: -0.0793 S33: -0.2455 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6982 37.0310 5.6648 REMARK 3 T TENSOR REMARK 3 T11: 0.0336 T22: 0.0317 REMARK 3 T33: 0.0147 T12: 0.0021 REMARK 3 T13: -0.0042 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.1480 L22: 0.7833 REMARK 3 L33: 0.7402 L12: -0.0120 REMARK 3 L13: -0.0488 L23: -0.3807 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: -0.0191 S13: 0.0271 REMARK 3 S21: 0.0625 S22: 0.0242 S23: -0.0511 REMARK 3 S31: -0.0141 S32: -0.0178 S33: -0.0481 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NKU COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB059955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 - 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35 - 40% (V/V) PEG600, 0.1 M REMARK 280 PHOSPHATE/CITRATE, 3% (W/V) GLUCOSE MONOHYDRATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.80450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.88750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.97750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.88750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.80450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.97750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 6 REMARK 465 HIS A 7 REMARK 465 MSE A 8 REMARK 465 MSE A 9 REMARK 465 SER A 10 REMARK 465 VAL A 11 REMARK 465 ASN A 12 REMARK 465 GLU A 13 REMARK 465 GLU A 14 REMARK 465 GLN A 15 REMARK 465 PHE A 16 REMARK 465 LEU A 100 REMARK 465 ALA A 101 REMARK 465 LYS A 102 REMARK 465 ALA A 103 REMARK 465 GLN A 104 REMARK 465 ALA A 105 REMARK 465 THR A 106 REMARK 465 GLU A 107 REMARK 465 TYR A 108 REMARK 465 ASN A 145 REMARK 465 GLN A 146 REMARK 465 ILE A 147 REMARK 465 TYR A 148 REMARK 465 PRO A 149 REMARK 465 ASP A 150 REMARK 465 PRO A 151 REMARK 465 ILE A 152 REMARK 465 GLY A 153 REMARK 465 PHE A 211 REMARK 465 SER A 212 REMARK 465 ASN A 213 REMARK 465 MSE A 214 REMARK 465 VAL A 215 REMARK 465 SER A 216 REMARK 465 ALA A 217 REMARK 465 LYS A 218 REMARK 465 GLY B 6 REMARK 465 HIS B 7 REMARK 465 MSE B 8 REMARK 465 MSE B 9 REMARK 465 SER B 10 REMARK 465 VAL B 11 REMARK 465 ASN B 12 REMARK 465 GLU B 13 REMARK 465 GLU B 14 REMARK 465 GLN B 15 REMARK 465 SER B 216 REMARK 465 ALA B 217 REMARK 465 LYS B 218 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 LEU A 28 CG CD1 CD2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 GLN A 207 CG CD OE1 NE2 REMARK 470 SER A 210 OG REMARK 470 LYS B 90 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 247 O HOH B 277 2.04 REMARK 500 OD1 ASP A 164 NZ LYS A 204 2.11 REMARK 500 O LEU A 111 O HOH A 254 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 117 CB VAL B 117 CG2 0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 79 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 79 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 70 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 112 -143.48 63.71 REMARK 500 ASP A 177 66.47 65.13 REMARK 500 ALA B 176 -70.59 -57.74 REMARK 500 PRO B 193 48.07 -80.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 299 DISTANCE = 5.34 ANGSTROMS REMARK 525 HOH B 300 DISTANCE = 5.17 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 220 DBREF 3NKU A 9 218 UNP Q29ST3 Q29ST3_LEGPN 9 218 DBREF 3NKU B 9 218 UNP Q29ST3 Q29ST3_LEGPN 9 218 SEQADV 3NKU GLY A 6 UNP Q29ST3 EXPRESSION TAG SEQADV 3NKU HIS A 7 UNP Q29ST3 EXPRESSION TAG SEQADV 3NKU MSE A 8 UNP Q29ST3 EXPRESSION TAG SEQADV 3NKU GLY B 6 UNP Q29ST3 EXPRESSION TAG SEQADV 3NKU HIS B 7 UNP Q29ST3 EXPRESSION TAG SEQADV 3NKU MSE B 8 UNP Q29ST3 EXPRESSION TAG SEQRES 1 A 213 GLY HIS MSE MSE SER VAL ASN GLU GLU GLN PHE GLY SER SEQRES 2 A 213 LEU TYR SER ASP GLU ARG ASP LYS PRO LEU LEU SER PRO SEQRES 3 A 213 THR ALA GLN LYS LYS PHE GLU GLU TYR GLN ASN LYS LEU SEQRES 4 A 213 ALA ASN LEU SER LYS ILE ILE ARG GLU ASN GLU GLY ASN SEQRES 5 A 213 GLU VAL SER PRO TRP GLN GLU TRP GLU ASN GLY LEU ARG SEQRES 6 A 213 GLN ILE TYR LYS GLU MSE ILE TYR ASP ALA PHE ASP ALA SEQRES 7 A 213 LEU GLY VAL GLU MSE PRO LYS ASP MSE GLU VAL HIS PHE SEQRES 8 A 213 ALA GLY SER LEU ALA LYS ALA GLN ALA THR GLU TYR SER SEQRES 9 A 213 ASP LEU ASP ALA PHE VAL ILE VAL LYS ASN ASP GLU ASP SEQRES 10 A 213 ILE LYS LYS VAL LYS PRO VAL PHE ASP ALA LEU ASN ASN SEQRES 11 A 213 LEU CYS GLN ARG ILE PHE THR ALA SER ASN GLN ILE TYR SEQRES 12 A 213 PRO ASP PRO ILE GLY ILE ASN PRO SER ARG LEU ILE GLY SEQRES 13 A 213 THR PRO ASP ASP LEU PHE GLY MSE LEU LYS ASP GLY MSE SEQRES 14 A 213 VAL ALA ASP VAL GLU ALA THR ALA MSE SER ILE LEU THR SEQRES 15 A 213 SER LYS PRO VAL LEU PRO ARG TYR GLU LEU GLY GLU GLU SEQRES 16 A 213 LEU ARG ASP LYS ILE LYS GLN GLU PRO SER PHE SER ASN SEQRES 17 A 213 MSE VAL SER ALA LYS SEQRES 1 B 213 GLY HIS MSE MSE SER VAL ASN GLU GLU GLN PHE GLY SER SEQRES 2 B 213 LEU TYR SER ASP GLU ARG ASP LYS PRO LEU LEU SER PRO SEQRES 3 B 213 THR ALA GLN LYS LYS PHE GLU GLU TYR GLN ASN LYS LEU SEQRES 4 B 213 ALA ASN LEU SER LYS ILE ILE ARG GLU ASN GLU GLY ASN SEQRES 5 B 213 GLU VAL SER PRO TRP GLN GLU TRP GLU ASN GLY LEU ARG SEQRES 6 B 213 GLN ILE TYR LYS GLU MSE ILE TYR ASP ALA PHE ASP ALA SEQRES 7 B 213 LEU GLY VAL GLU MSE PRO LYS ASP MSE GLU VAL HIS PHE SEQRES 8 B 213 ALA GLY SER LEU ALA LYS ALA GLN ALA THR GLU TYR SER SEQRES 9 B 213 ASP LEU ASP ALA PHE VAL ILE VAL LYS ASN ASP GLU ASP SEQRES 10 B 213 ILE LYS LYS VAL LYS PRO VAL PHE ASP ALA LEU ASN ASN SEQRES 11 B 213 LEU CYS GLN ARG ILE PHE THR ALA SER ASN GLN ILE TYR SEQRES 12 B 213 PRO ASP PRO ILE GLY ILE ASN PRO SER ARG LEU ILE GLY SEQRES 13 B 213 THR PRO ASP ASP LEU PHE GLY MSE LEU LYS ASP GLY MSE SEQRES 14 B 213 VAL ALA ASP VAL GLU ALA THR ALA MSE SER ILE LEU THR SEQRES 15 B 213 SER LYS PRO VAL LEU PRO ARG TYR GLU LEU GLY GLU GLU SEQRES 16 B 213 LEU ARG ASP LYS ILE LYS GLN GLU PRO SER PHE SER ASN SEQRES 17 B 213 MSE VAL SER ALA LYS MODRES 3NKU MSE A 76 MET SELENOMETHIONINE MODRES 3NKU MSE A 88 MET SELENOMETHIONINE MODRES 3NKU MSE A 92 MET SELENOMETHIONINE MODRES 3NKU MSE A 169 MET SELENOMETHIONINE MODRES 3NKU MSE A 174 MET SELENOMETHIONINE MODRES 3NKU MSE A 183 MET SELENOMETHIONINE MODRES 3NKU MSE B 76 MET SELENOMETHIONINE MODRES 3NKU MSE B 88 MET SELENOMETHIONINE MODRES 3NKU MSE B 92 MET SELENOMETHIONINE MODRES 3NKU MSE B 169 MET SELENOMETHIONINE MODRES 3NKU MSE B 174 MET SELENOMETHIONINE MODRES 3NKU MSE B 183 MET SELENOMETHIONINE MODRES 3NKU MSE B 214 MET SELENOMETHIONINE HET MSE A 76 8 HET MSE A 88 8 HET MSE A 92 8 HET MSE A 169 8 HET MSE A 174 8 HET MSE A 183 8 HET MSE B 76 8 HET MSE B 88 8 HET MSE B 92 8 HET MSE B 169 8 HET MSE B 174 13 HET MSE B 183 8 HET MSE B 214 8 HET PEG A 1 7 HET PGE A 220 10 HETNAM MSE SELENOMETHIONINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 3 PEG C4 H10 O3 FORMUL 4 PGE C6 H14 O4 FORMUL 5 HOH *161(H2 O) HELIX 1 1 SER A 30 ASN A 54 1 25 HELIX 2 2 GLU A 55 GLU A 58 5 4 HELIX 3 3 SER A 60 GLY A 85 1 26 HELIX 4 4 ASP A 120 SER A 144 1 25 HELIX 5 5 THR A 162 ASP A 172 1 11 HELIX 6 6 ASP A 177 THR A 187 1 11 HELIX 7 7 TYR A 195 GLU A 208 1 14 HELIX 8 8 SER B 30 ASN B 54 1 25 HELIX 9 9 GLU B 55 GLU B 58 5 4 HELIX 10 10 SER B 60 GLY B 85 1 26 HELIX 11 11 SER B 99 GLU B 107 5 9 HELIX 12 12 ASN B 119 GLU B 121 5 3 HELIX 13 13 ASP B 122 SER B 144 1 23 HELIX 14 14 THR B 162 ASP B 172 1 11 HELIX 15 15 ASP B 177 THR B 187 1 11 HELIX 16 16 TYR B 195 GLU B 208 1 14 HELIX 17 17 PRO B 209 VAL B 215 5 7 SHEET 1 A 4 SER A 157 GLY A 161 0 SHEET 2 A 4 ASP A 112 ILE A 116 -1 N VAL A 115 O LEU A 159 SHEET 3 A 4 GLU A 93 ALA A 97 -1 N GLU A 93 O ILE A 116 SHEET 4 A 4 LYS A 189 PRO A 190 -1 O LYS A 189 N PHE A 96 SHEET 1 B 4 ILE B 160 GLY B 161 0 SHEET 2 B 4 ASP B 112 ILE B 116 1 N VAL B 115 O GLY B 161 SHEET 3 B 4 GLU B 93 ALA B 97 -1 N ALA B 97 O ASP B 112 SHEET 4 B 4 LYS B 189 PRO B 190 -1 O LYS B 189 N PHE B 96 LINK C GLU A 75 N MSE A 76 1555 1555 1.31 LINK C MSE A 76 N ILE A 77 1555 1555 1.32 LINK C GLU A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N PRO A 89 1555 1555 1.35 LINK C ASP A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N GLU A 93 1555 1555 1.34 LINK C GLY A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N LEU A 170 1555 1555 1.33 LINK C GLY A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N VAL A 175 1555 1555 1.33 LINK C ALA A 182 N MSE A 183 1555 1555 1.32 LINK C MSE A 183 N SER A 184 1555 1555 1.33 LINK C GLU B 75 N MSE B 76 1555 1555 1.32 LINK C MSE B 76 N ILE B 77 1555 1555 1.32 LINK C GLU B 87 N MSE B 88 1555 1555 1.33 LINK C MSE B 88 N PRO B 89 1555 1555 1.34 LINK C ASP B 91 N MSE B 92 1555 1555 1.33 LINK C MSE B 92 N GLU B 93 1555 1555 1.33 LINK C GLY B 168 N MSE B 169 1555 1555 1.31 LINK C MSE B 169 N LEU B 170 1555 1555 1.32 LINK C GLY B 173 N MSE B 174 1555 1555 1.34 LINK C MSE B 174 N VAL B 175 1555 1555 1.33 LINK C ALA B 182 N MSE B 183 1555 1555 1.32 LINK C MSE B 183 N SER B 184 1555 1555 1.33 LINK C ASN B 213 N MSE B 214 1555 1555 1.34 LINK C MSE B 214 N VAL B 215 1555 1555 1.35 CISPEP 1 PHE B 16 GLY B 17 0 10.16 SITE 1 AC1 2 ILE A 51 ARG A 52 SITE 1 AC2 4 GLU A 58 ARG A 158 VAL A 175 ALA A 176 CRYST1 47.609 49.955 159.775 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021004 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006259 0.00000