HEADER TRANSFERASE 21-JUN-10 3NKY TITLE STRUCTURE OF A MUTANT P44S OF FOOT-AND-MOUTH DISEASE VIRUS RNA- TITLE 2 DEPENDENT RNA POLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3D POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS - TYPE C; SOURCE 3 ORGANISM_TAXID: 12116; SOURCE 4 STRAIN: C-S8C1; SOURCE 5 GENE: 3D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A (NOVAGEN) KEYWDS FOOT-AND-MOUTH DISEASE VIRUS RNA DEPENDENT RNA POLYMERASE, RIBAVIRIN, KEYWDS 2 3D POLYMERASE PICORNAVIRUS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.AGUDO,C.FERRER-ORTA,A.ARIAS,R.PEREZ-LUQUE,N.VERDAGUER,E.DOMINGO REVDAT 2 01-NOV-23 3NKY 1 REMARK SEQADV LINK REVDAT 1 25-MAY-11 3NKY 0 JRNL AUTH R.AGUDO,C.FERRER-ORTA,A.ARIAS,I.DE LA HIGUERA,C.PERALES, JRNL AUTH 2 R.PEREZ-LUQUE,N.VERDAGUER,E.DOMINGO JRNL TITL A MULTI-STEP PROCESS OF VIRAL ADAPTATION TO A MUTAGENIC JRNL TITL 2 NUCLEOSIDE ANALOGUE BY MODULATION OF TRANSITION TYPES LEADS JRNL TITL 3 TO EXTINCTION-ESCAPE. JRNL REF PLOS PATHOG. V. 6 01072 2010 JRNL REFN ISSN 1553-7366 JRNL PMID 20865120 JRNL DOI 10.1371/JOURNAL.PPAT.1001072 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC (RIGID BODY REFINEMENT) REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 22889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1237 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1433 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3731 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.253 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.209 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.514 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3823 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5183 ; 0.856 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 4.476 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;34.146 ;23.481 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 622 ;14.837 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;12.174 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 565 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2947 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2365 ; 0.223 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3801 ; 0.418 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1458 ; 0.435 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1382 ; 0.752 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 476 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4331 25.4877 30.9951 REMARK 3 T TENSOR REMARK 3 T11: 0.1655 T22: 0.1079 REMARK 3 T33: 0.0465 T12: -0.0124 REMARK 3 T13: 0.0157 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 2.4629 L22: 1.1473 REMARK 3 L33: 0.8405 L12: -0.9786 REMARK 3 L13: -0.3694 L23: 0.1163 REMARK 3 S TENSOR REMARK 3 S11: 0.1898 S12: 0.0145 S13: -0.0070 REMARK 3 S21: -0.3796 S22: -0.0911 S23: -0.0556 REMARK 3 S31: -0.0386 S32: 0.0071 S33: -0.0988 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 477 A 527 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6800 24.9877 33.2772 REMARK 3 T TENSOR REMARK 3 T11: 0.2603 T22: 0.2993 REMARK 3 T33: 0.2506 T12: -0.0391 REMARK 3 T13: 0.0678 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 1.2935 L22: 0.9559 REMARK 3 L33: 0.3606 L12: -0.5177 REMARK 3 L13: 0.1941 L23: 0.1150 REMARK 3 S TENSOR REMARK 3 S11: 0.1012 S12: 0.0861 S13: 0.0929 REMARK 3 S21: -0.2189 S22: -0.0800 S23: -0.0989 REMARK 3 S31: -0.0128 S32: 0.0098 S33: -0.0212 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NKY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000059959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24188 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 46.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC (RIGID BODY REFINEMENT) REMARK 200 STARTING MODEL: PDB ENTRY 1U09 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG 4000, 0.2M SODIUM ACETATE, REMARK 280 0.1M SODIUM CITRATE, 4% BUTYROLACTONE, PH 5.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.50500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.76500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.76500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.25250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.76500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.76500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.75750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.76500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.76500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.25250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.76500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.76500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 90.75750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.50500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 16 CG SD CE REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 ARG A 127 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 ARG A 417 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 16 98.98 -68.11 REMARK 500 LYS A 18 122.36 67.84 REMARK 500 GLU A 33 46.53 -76.02 REMARK 500 VAL A 105 -165.84 -125.65 REMARK 500 ALA A 116 122.37 98.36 REMARK 500 PHE A 261 49.72 -105.05 REMARK 500 GLU A 286 -110.99 49.22 REMARK 500 LYS A 369 -162.52 46.14 REMARK 500 SER A 370 73.49 -101.46 REMARK 500 HIS A 475 33.96 -98.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 115 O REMARK 620 2 HOH A 513 O 140.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WNE RELATED DB: PDB REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN REMARK 900 COMPLEX WITH A TEMPLATE-PRIMER RNA REMARK 900 RELATED ID: 1U09 RELATED DB: PDB REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE REMARK 900 RELATED ID: 2E9R RELATED DB: PDB REMARK 900 FOOT-AND-MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN REMARK 900 COMPLEX WITH A TEMPLATE-PRIMER RNA AND WITH RIBAVIRIN REMARK 900 RELATED ID: 2E9T RELATED DB: PDB REMARK 900 FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE RNA DEPENDENT IN REMARK 900 COMPLEX WITH A TEMPLATE-PRIMER RNA AND 5F-UTP REMARK 900 RELATED ID: 2E9Z RELATED DB: PDB REMARK 900 FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN COMPLEX WITH A REMARK 900 TEMPLATE- PRIMER RNA, ATP AND UTP REMARK 900 RELATED ID: 2EC0 RELATED DB: PDB REMARK 900 RNA-DEPENDENT RNA POLYMERASE OF FOOT-AND-MOUTH DISEASE VIRUS IN REMARK 900 COMPLEX WITH A TEMPLATE-PRIMER RNA AND ATP REMARK 900 RELATED ID: 3NL0 RELATED DB: PDB DBREF 3NKY A 1 470 UNP Q9QCE4 Q9QCE4_9PICO 1858 2327 SEQADV 3NKY SER A 44 UNP Q9QCE4 PRO 1901 ENGINEERED MUTATION SEQADV 3NKY ALA A 471 UNP Q9QCE4 EXPRESSION TAG SEQADV 3NKY ALA A 472 UNP Q9QCE4 EXPRESSION TAG SEQADV 3NKY ALA A 473 UNP Q9QCE4 EXPRESSION TAG SEQADV 3NKY GLU A 474 UNP Q9QCE4 EXPRESSION TAG SEQADV 3NKY HIS A 475 UNP Q9QCE4 EXPRESSION TAG SEQADV 3NKY HIS A 476 UNP Q9QCE4 EXPRESSION TAG SEQRES 1 A 476 GLY LEU ILE VAL ASP THR ARG ASP VAL GLU GLU ARG VAL SEQRES 2 A 476 HIS VAL MET ARG LYS THR LYS LEU ALA PRO THR VAL ALA SEQRES 3 A 476 HIS GLY VAL PHE ASN PRO GLU PHE GLY PRO ALA ALA LEU SEQRES 4 A 476 SER ASN LYS ASP SER ARG LEU ASN GLU GLY VAL VAL LEU SEQRES 5 A 476 ASP GLU VAL ILE PHE SER LYS HIS LYS GLY ASP THR LYS SEQRES 6 A 476 MET SER ALA GLU ASP LYS ALA LEU PHE ARG ARG CYS ALA SEQRES 7 A 476 ALA ASP TYR ALA SER ARG LEU HIS SER VAL LEU GLY THR SEQRES 8 A 476 ALA ASN ALA PRO LEU SER ILE TYR GLU ALA ILE LYS GLY SEQRES 9 A 476 VAL ASP GLY LEU ASP ALA MET GLU PRO ASP THR ALA PRO SEQRES 10 A 476 GLY LEU PRO TRP ALA LEU GLN GLY LYS ARG ARG GLY ALA SEQRES 11 A 476 LEU ILE ASP PHE GLU ASN GLY THR VAL GLY PRO GLU VAL SEQRES 12 A 476 GLU ALA ALA LEU LYS LEU MET GLU LYS ARG GLU TYR LYS SEQRES 13 A 476 PHE ALA CYS GLN THR PHE LEU LYS ASP GLU ILE ARG PRO SEQRES 14 A 476 MET GLU LYS VAL ARG ALA GLY LYS THR ARG ILE VAL ASP SEQRES 15 A 476 VAL LEU PRO VAL GLU HIS ILE LEU TYR THR ARG MET MET SEQRES 16 A 476 ILE GLY ARG PHE CYS ALA GLN MET HIS SER ASN ASN GLY SEQRES 17 A 476 PRO GLN ILE GLY SER ALA VAL GLY CYS ASN PRO ASP VAL SEQRES 18 A 476 ASP TRP GLN ARG PHE GLY THR HIS PHE ALA GLN TYR ARG SEQRES 19 A 476 ASN VAL TRP ASP VAL ASP TYR SER ALA PHE ASP ALA ASN SEQRES 20 A 476 HIS CYS SER ASP ALA MET ASN ILE MET PHE GLU GLU VAL SEQRES 21 A 476 PHE ARG THR GLU PHE GLY PHE HIS PRO ASN ALA GLU TRP SEQRES 22 A 476 ILE LEU LYS THR LEU VAL ASN THR GLU HIS ALA TYR GLU SEQRES 23 A 476 ASN LYS ARG ILE THR VAL GLU GLY GLY MET PRO SER GLY SEQRES 24 A 476 CYS SER ALA THR SER ILE ILE ASN THR ILE LEU ASN ASN SEQRES 25 A 476 ILE TYR VAL LEU TYR ALA LEU ARG ARG HIS TYR GLU GLY SEQRES 26 A 476 VAL GLU LEU ASP THR TYR THR MET ILE SER TYR GLY ASP SEQRES 27 A 476 ASP ILE VAL VAL ALA SER ASP TYR ASP LEU ASP PHE GLU SEQRES 28 A 476 ALA LEU LYS PRO HIS PHE LYS SER LEU GLY GLN THR ILE SEQRES 29 A 476 THR PRO ALA ASP LYS SER ASP LYS GLY PHE VAL LEU GLY SEQRES 30 A 476 HIS SER ILE THR ASP VAL THR PHE LEU LYS ARG HIS PHE SEQRES 31 A 476 HIS MET ASP TYR GLY THR GLY PHE TYR LYS PRO VAL MET SEQRES 32 A 476 ALA SER LYS THR LEU GLU ALA ILE LEU SER PHE ALA ARG SEQRES 33 A 476 ARG GLY THR ILE GLN GLU LYS LEU ILE SER VAL ALA GLY SEQRES 34 A 476 LEU ALA VAL HIS SER GLY PRO ASP GLU TYR ARG ARG LEU SEQRES 35 A 476 PHE GLU PRO PHE GLN GLY LEU PHE GLU ILE PRO SER TYR SEQRES 36 A 476 ARG SER LEU TYR LEU ARG TRP VAL ASN ALA VAL CYS GLY SEQRES 37 A 476 ASP ALA ALA ALA ALA GLU HIS HIS HET MG A 500 1 HET MG A 501 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG 2(MG 2+) FORMUL 4 HOH *49(H2 O) HELIX 1 1 ALA A 26 ASN A 31 1 6 HELIX 2 2 VAL A 51 PHE A 57 1 7 HELIX 3 3 SER A 67 GLY A 90 1 24 HELIX 4 4 SER A 97 GLY A 104 1 8 HELIX 5 5 ARG A 127 LEU A 131 1 5 HELIX 6 6 GLY A 140 LYS A 152 1 13 HELIX 7 7 MET A 170 ALA A 175 1 6 HELIX 8 8 PRO A 185 ASN A 206 1 22 HELIX 9 9 ASN A 218 ALA A 231 1 14 HELIX 10 10 PHE A 244 HIS A 248 5 5 HELIX 11 11 CYS A 249 PHE A 261 1 13 HELIX 12 12 ARG A 262 GLY A 266 5 5 HELIX 13 13 PRO A 269 THR A 277 1 9 HELIX 14 14 ALA A 302 ARG A 321 1 20 HELIX 15 15 LEU A 353 SER A 359 1 7 HELIX 16 16 ALA A 404 SER A 413 1 10 HELIX 17 17 THR A 419 VAL A 432 1 14 HELIX 18 18 GLY A 435 GLU A 444 1 10 HELIX 19 19 PRO A 445 GLN A 447 5 3 HELIX 20 20 SER A 454 CYS A 467 1 14 HELIX 21 21 CYS A 467 GLU A 474 1 8 SHEET 1 A 4 LEU A 2 VAL A 13 0 SHEET 2 A 4 ASN A 280 GLU A 293 -1 O GLU A 293 N LEU A 2 SHEET 3 A 4 CYS A 159 LEU A 163 1 N CYS A 159 O GLU A 282 SHEET 4 A 4 ILE A 180 VAL A 183 -1 O VAL A 183 N GLN A 160 SHEET 1 B 2 LEU A 21 PRO A 23 0 SHEET 2 B 2 PHE A 414 ARG A 416 -1 O ALA A 415 N ALA A 22 SHEET 1 C 2 PHE A 34 PRO A 36 0 SHEET 2 C 2 ILE A 167 PRO A 169 -1 O ARG A 168 N GLY A 35 SHEET 1 D 2 ILE A 132 ASP A 133 0 SHEET 2 D 2 THR A 138 VAL A 139 -1 O THR A 138 N ASP A 133 SHEET 1 E 4 THR A 332 TYR A 336 0 SHEET 2 E 4 ASP A 339 SER A 344 -1 O ALA A 343 N THR A 332 SHEET 3 E 4 ASN A 235 TYR A 241 -1 N TRP A 237 O VAL A 342 SHEET 4 E 4 ILE A 364 PRO A 366 -1 O THR A 365 N ASP A 240 SHEET 1 F 3 THR A 384 PHE A 385 0 SHEET 2 F 3 ARG A 388 MET A 392 -1 O ARG A 388 N PHE A 385 SHEET 3 F 3 TYR A 399 MET A 403 -1 O VAL A 402 N HIS A 389 LINK O THR A 115 MG MG A 501 1555 1555 2.43 LINK MG MG A 501 O HOH A 513 1555 1555 1.93 CISPEP 1 LEU A 119 PRO A 120 0 2.26 SITE 1 AC1 1 ARG A 128 SITE 1 AC2 2 THR A 115 HOH A 513 CRYST1 93.530 93.530 121.010 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008264 0.00000