data_3NL8 # _entry.id 3NL8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3NL8 RCSB RCSB059969 WWPDB D_1000059969 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2011-11-23 _pdbx_database_PDB_obs_spr.pdb_id 3UD6 _pdbx_database_PDB_obs_spr.replace_pdb_id 3NL8 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 3NL8 _pdbx_database_status.recvd_initial_deposition_date 2010-06-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baker, D.' 1 'Stoddard, B.L.' 2 'Althoff, E.A.' 3 'Wang, L.' 4 'Jiang, L.' 5 'Moody, J.' 6 'Bolduc, J.' 7 'Lassila, J.' 8 'Wang, Z.' 9 'Smith, M.' 10 'Hari, S.' 11 'Herschlag, D.' 12 # _citation.id primary _citation.title 'Robust computational design, optimization, and structural characterization of retroaldol enzymes' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Baker, D.' 1 primary 'Stoddard, B.L.' 2 primary 'Althoff, E.A.' 3 primary 'Wang, L.' 4 primary 'Jiang, L.' 5 primary 'Moody, J.' 6 primary 'Bolduc, J.' 7 primary 'Lassila, J.' 8 primary 'Wang, Z.' 9 primary 'Smith, M.' 10 primary 'Hari, S.' 11 primary 'Herschlag, D.' 12 # _cell.entry_id 3NL8 _cell.length_a 62.684 _cell.length_b 62.684 _cell.length_c 123.680 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NL8 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Retro-aldolase 29961.520 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 61 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MPRYLKGWLEDVVQLSLRRPSVRASRQRPIISLNERILEFNKRNITAIIATYMRKSPWGLDVERDPIEYAKFMERYAVGL SICTEEKYANGSYETLRKIASSVSIPILMADFIVKESQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPII (LLZ)INDENDLDIALRIGARFIGICSRDWETLEINKENQRKLISMIPSNVVKVASTGISERNEIEELRKLGVNAFSIIS SLMRNPEKIKELIEGSLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MPRYLKGWLEDVVQLSLRRPSVRASRQRPIISLNERILEFNKRNITAIIATYMRKSPWGLDVERDPIEYAKFMERYAVGL SICTEEKYANGSYETLRKIASSVSIPILMADFIVKESQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIXI NDENDLDIALRIGARFIGICSRDWETLEINKENQRKLISMIPSNVVKVASTGISERNEIEELRKLGVNAFSIISSLMRNP EKIKELIEGSLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 ARG n 1 4 TYR n 1 5 LEU n 1 6 LYS n 1 7 GLY n 1 8 TRP n 1 9 LEU n 1 10 GLU n 1 11 ASP n 1 12 VAL n 1 13 VAL n 1 14 GLN n 1 15 LEU n 1 16 SER n 1 17 LEU n 1 18 ARG n 1 19 ARG n 1 20 PRO n 1 21 SER n 1 22 VAL n 1 23 ARG n 1 24 ALA n 1 25 SER n 1 26 ARG n 1 27 GLN n 1 28 ARG n 1 29 PRO n 1 30 ILE n 1 31 ILE n 1 32 SER n 1 33 LEU n 1 34 ASN n 1 35 GLU n 1 36 ARG n 1 37 ILE n 1 38 LEU n 1 39 GLU n 1 40 PHE n 1 41 ASN n 1 42 LYS n 1 43 ARG n 1 44 ASN n 1 45 ILE n 1 46 THR n 1 47 ALA n 1 48 ILE n 1 49 ILE n 1 50 ALA n 1 51 THR n 1 52 TYR n 1 53 MET n 1 54 ARG n 1 55 LYS n 1 56 SER n 1 57 PRO n 1 58 TRP n 1 59 GLY n 1 60 LEU n 1 61 ASP n 1 62 VAL n 1 63 GLU n 1 64 ARG n 1 65 ASP n 1 66 PRO n 1 67 ILE n 1 68 GLU n 1 69 TYR n 1 70 ALA n 1 71 LYS n 1 72 PHE n 1 73 MET n 1 74 GLU n 1 75 ARG n 1 76 TYR n 1 77 ALA n 1 78 VAL n 1 79 GLY n 1 80 LEU n 1 81 SER n 1 82 ILE n 1 83 CYS n 1 84 THR n 1 85 GLU n 1 86 GLU n 1 87 LYS n 1 88 TYR n 1 89 ALA n 1 90 ASN n 1 91 GLY n 1 92 SER n 1 93 TYR n 1 94 GLU n 1 95 THR n 1 96 LEU n 1 97 ARG n 1 98 LYS n 1 99 ILE n 1 100 ALA n 1 101 SER n 1 102 SER n 1 103 VAL n 1 104 SER n 1 105 ILE n 1 106 PRO n 1 107 ILE n 1 108 LEU n 1 109 MET n 1 110 ALA n 1 111 ASP n 1 112 PHE n 1 113 ILE n 1 114 VAL n 1 115 LYS n 1 116 GLU n 1 117 SER n 1 118 GLN n 1 119 ILE n 1 120 ASP n 1 121 ASP n 1 122 ALA n 1 123 TYR n 1 124 ASN n 1 125 LEU n 1 126 GLY n 1 127 ALA n 1 128 ASP n 1 129 THR n 1 130 VAL n 1 131 PRO n 1 132 LEU n 1 133 ILE n 1 134 VAL n 1 135 LYS n 1 136 ILE n 1 137 LEU n 1 138 THR n 1 139 GLU n 1 140 ARG n 1 141 GLU n 1 142 LEU n 1 143 GLU n 1 144 SER n 1 145 LEU n 1 146 LEU n 1 147 GLU n 1 148 TYR n 1 149 ALA n 1 150 ARG n 1 151 SER n 1 152 TYR n 1 153 GLY n 1 154 MET n 1 155 GLU n 1 156 PRO n 1 157 ILE n 1 158 ILE n 1 159 LLZ n 1 160 ILE n 1 161 ASN n 1 162 ASP n 1 163 GLU n 1 164 ASN n 1 165 ASP n 1 166 LEU n 1 167 ASP n 1 168 ILE n 1 169 ALA n 1 170 LEU n 1 171 ARG n 1 172 ILE n 1 173 GLY n 1 174 ALA n 1 175 ARG n 1 176 PHE n 1 177 ILE n 1 178 GLY n 1 179 ILE n 1 180 CYS n 1 181 SER n 1 182 ARG n 1 183 ASP n 1 184 TRP n 1 185 GLU n 1 186 THR n 1 187 LEU n 1 188 GLU n 1 189 ILE n 1 190 ASN n 1 191 LYS n 1 192 GLU n 1 193 ASN n 1 194 GLN n 1 195 ARG n 1 196 LYS n 1 197 LEU n 1 198 ILE n 1 199 SER n 1 200 MET n 1 201 ILE n 1 202 PRO n 1 203 SER n 1 204 ASN n 1 205 VAL n 1 206 VAL n 1 207 LYS n 1 208 VAL n 1 209 ALA n 1 210 SER n 1 211 THR n 1 212 GLY n 1 213 ILE n 1 214 SER n 1 215 GLU n 1 216 ARG n 1 217 ASN n 1 218 GLU n 1 219 ILE n 1 220 GLU n 1 221 GLU n 1 222 LEU n 1 223 ARG n 1 224 LYS n 1 225 LEU n 1 226 GLY n 1 227 VAL n 1 228 ASN n 1 229 ALA n 1 230 PHE n 1 231 SER n 1 232 ILE n 1 233 ILE n 1 234 SER n 1 235 SER n 1 236 LEU n 1 237 MET n 1 238 ARG n 1 239 ASN n 1 240 PRO n 1 241 GLU n 1 242 LYS n 1 243 ILE n 1 244 LYS n 1 245 GLU n 1 246 LEU n 1 247 ILE n 1 248 GLU n 1 249 GLY n 1 250 SER n 1 251 LEU n 1 252 GLU n 1 253 HIS n 1 254 HIS n 1 255 HIS n 1 256 HIS n 1 257 HIS n 1 258 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'artificial gene' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET29b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'THE SEQUENCE WAS COMPUTATIONALLY DESIGNED BASED ON INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE NATURALLY FOUND IN SULFOLOBUS SOLFATARICUS.' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3NL8 _struct_ref.pdbx_db_accession 3NL8 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MPRYLKGWLEDVVQLSLRRPSVRASRQRPIISLNERILEFNKRNITAIIATYMRKSPWGLDVERDPIEYAKFMERYAVGL SICTEEKYANGSYETLRKIASSVSIPILMADFIVKESQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIKI NDENDLDIALRIGARFIGICSRDWETLEINKENQRKLISMIPSNVVKVASTGISERNEIEELRKLGVNAFSIISSLMRNP EKIKELIEGSLEHHHHHH ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3NL8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 258 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3NL8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 258 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 258 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LLZ 'L-peptide linking' n 'N~6~-[(1S)-3-(6-methoxynaphthalen-2-yl)-1-methyl-3-oxopropyl]-L-lysine' ? 'C21 H28 N2 O4' 372.458 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3NL8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_percent_sol 49.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details ;Protein at 5mg/ml in 100mM NaCl, 25mM Tris pH7.5. Crystals grew at and near 2M Ammonium Sulfate, 4% PEG400, 100mM Na Acetate pH5.5, VAPOR DIFFUSION, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.pdbx_collection_date 2009-07-18 _diffrn_detector.details 'Varimax HF' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Varimax HR mirrors/optics' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 3NL8 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.091 _reflns.number_obs 17137 _reflns.number_all ? _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.037 _reflns.pdbx_netI_over_sigmaI 22.0 _reflns.B_iso_Wilson_estimate 29.82 _reflns.pdbx_redundancy 2.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_low 2.16 _reflns_shell.d_res_high 2.091 _reflns_shell.percent_possible_all 95.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.153 _reflns_shell.meanI_over_sigI_obs 6.86 _reflns_shell.pdbx_redundancy 2.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1612 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3NL8 _refine.ls_number_reflns_obs 16229 _refine.ls_number_reflns_all 16229 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.47 _refine.ls_d_res_high 2.091 _refine.ls_percent_reflns_obs 99.35 _refine.ls_R_factor_obs 0.22693 _refine.ls_R_factor_all 0.22849 _refine.ls_R_factor_R_work 0.22693 _refine.ls_R_factor_R_free 0.25779 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 868 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.912 _refine.B_iso_mean 32.849 _refine.aniso_B[1][1] -0.01 _refine.aniso_B[2][2] -0.01 _refine.aniso_B[3][3] 0.02 _refine.aniso_B[1][2] -0.01 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 1A53, modified to prevent model bias' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model anisotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.247 _refine.pdbx_overall_ESU_R_Free 0.196 _refine.overall_SU_ML 0.134 _refine.overall_SU_B 4.894 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3NL8 _refine_analyze.Luzzati_coordinate_error_obs 0.134 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.196 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1996 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 61 _refine_hist.number_atoms_total 2067 _refine_hist.d_res_high 2.091 _refine_hist.d_res_low 19.47 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.022 ? 2035 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.028 2.003 ? 2749 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.933 5.000 ? 247 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.439 23.820 ? 89 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.268 15.000 ? 384 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.778 15.000 ? 19 'X-RAY DIFFRACTION' ? r_chiral_restr 0.066 0.200 ? 314 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1484 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.194 0.200 ? 902 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.299 0.200 ? 1409 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.133 0.200 ? 119 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.163 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.110 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.765 2.000 ? 1285 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.376 3.000 ? 2011 'X-RAY DIFFRACTION' ? r_scbond_it 1.908 4.000 ? 871 'X-RAY DIFFRACTION' ? r_scangle_it 3.215 6.000 ? 738 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.091 _refine_ls_shell.d_res_low 2.145 _refine_ls_shell.number_reflns_R_work 1121 _refine_ls_shell.R_factor_R_work 0.246 _refine_ls_shell.percent_reflns_obs 96.71 _refine_ls_shell.R_factor_R_free 0.317 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1121 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3NL8 _struct.title 'Robust computational design, optimization, and structural characterization of retroaldol enzymes' _struct.pdbx_descriptor Retro-aldolase _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NL8 _struct_keywords.pdbx_keywords LYASE _struct_keywords.text 'Computationally Designed, Retroaldolase, TimBarrel, LYASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 6 ? ARG A 18 ? LYS A 6 ARG A 18 1 ? 13 HELX_P HELX_P2 2 SER A 32 ? ARG A 43 ? SER A 32 ARG A 43 1 ? 12 HELX_P HELX_P3 3 ASP A 65 ? ARG A 75 ? ASP A 65 ARG A 75 1 ? 11 HELX_P HELX_P4 4 SER A 92 ? VAL A 103 ? SER A 92 VAL A 103 1 ? 12 HELX_P HELX_P5 5 LYS A 115 ? GLY A 126 ? LYS A 115 GLY A 126 1 ? 12 HELX_P HELX_P6 6 THR A 138 ? TYR A 152 ? THR A 138 TYR A 152 1 ? 15 HELX_P HELX_P7 7 ASP A 162 ? ILE A 172 ? ASP A 162 ILE A 172 1 ? 11 HELX_P HELX_P8 8 ASN A 190 ? SER A 199 ? ASN A 190 SER A 199 1 ? 10 HELX_P HELX_P9 9 ARG A 216 ? LEU A 225 ? ARG A 216 LEU A 225 1 ? 10 HELX_P HELX_P10 10 ILE A 233 ? ASN A 239 ? ILE A 233 ASN A 239 1 ? 7 HELX_P HELX_P11 11 GLU A 241 ? GLU A 248 ? GLU A 241 GLU A 248 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id LLZ _struct_conn.ptnr1_label_seq_id 159 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id ILE _struct_conn.ptnr2_label_seq_id 160 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LLZ _struct_conn.ptnr1_auth_seq_id 159 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ILE _struct_conn.ptnr2_auth_seq_id 160 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.334 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 107 ? ALA A 110 ? ILE A 107 ALA A 110 A 2 GLY A 79 ? CYS A 83 ? GLY A 79 CYS A 83 A 3 ILE A 48 ? TYR A 52 ? ILE A 48 TYR A 52 A 4 ALA A 229 ? ILE A 232 ? ALA A 229 ILE A 232 A 5 VAL A 206 ? SER A 210 ? VAL A 206 SER A 210 A 6 PHE A 176 ? ILE A 179 ? PHE A 176 ILE A 179 A 7 ILE A 157 ? ILE A 160 ? ILE A 157 ILE A 160 A 8 PRO A 131 ? ILE A 133 ? PRO A 131 ILE A 133 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 108 ? O LEU A 108 N LEU A 80 ? N LEU A 80 A 2 3 O SER A 81 ? O SER A 81 N TYR A 52 ? N TYR A 52 A 3 4 N ILE A 49 ? N ILE A 49 O PHE A 230 ? O PHE A 230 A 4 5 O ALA A 229 ? O ALA A 229 N ALA A 209 ? N ALA A 209 A 5 6 O VAL A 208 ? O VAL A 208 N ILE A 179 ? N ILE A 179 A 6 7 O PHE A 176 ? O PHE A 176 N ILE A 158 ? N ILE A 158 A 7 8 O LLZ A 159 ? O LLZ A 159 N LEU A 132 ? N LEU A 132 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 401' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 TRP A 58 ? TRP A 58 . ? 1_555 ? 2 AC1 7 ARG A 171 ? ARG A 171 . ? 4_455 ? 3 AC1 7 ARG A 182 ? ARG A 182 . ? 1_555 ? 4 AC1 7 ILE A 233 ? ILE A 233 . ? 1_555 ? 5 AC1 7 SER A 234 ? SER A 234 . ? 1_555 ? 6 AC1 7 HOH D . ? HOH A 356 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 357 . ? 1_555 ? 8 AC2 3 ARG A 36 ? ARG A 36 . ? 1_555 ? 9 AC2 3 LYS A 42 ? LYS A 42 . ? 6_555 ? 10 AC2 3 ARG A 43 ? ARG A 43 . ? 1_555 ? # _database_PDB_matrix.entry_id 3NL8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3NL8 _atom_sites.fract_transf_matrix[1][1] 0.015953 _atom_sites.fract_transf_matrix[1][2] 0.009210 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018421 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008085 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 TRP 58 58 58 TRP TRP A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 MET 73 73 73 MET MET A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 CYS 83 83 83 CYS CYS A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 MET 109 109 109 MET MET A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 TYR 123 123 123 TYR TYR A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 THR 129 129 129 THR THR A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 PRO 131 131 131 PRO PRO A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 THR 138 138 138 THR THR A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 TYR 148 148 148 TYR TYR A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 TYR 152 152 152 TYR TYR A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 MET 154 154 154 MET MET A . n A 1 155 GLU 155 155 155 GLU GLU A . n A 1 156 PRO 156 156 156 PRO PRO A . n A 1 157 ILE 157 157 157 ILE ILE A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 LLZ 159 159 159 LLZ LLX A . n A 1 160 ILE 160 160 160 ILE ILE A . n A 1 161 ASN 161 161 161 ASN ASN A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 ASP 165 165 165 ASP ASP A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 ILE 168 168 168 ILE ILE A . n A 1 169 ALA 169 169 169 ALA ALA A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 GLY 173 173 173 GLY GLY A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 ARG 175 175 175 ARG ARG A . n A 1 176 PHE 176 176 176 PHE PHE A . n A 1 177 ILE 177 177 177 ILE ILE A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 CYS 180 180 180 CYS CYS A . n A 1 181 SER 181 181 181 SER SER A . n A 1 182 ARG 182 182 182 ARG ARG A . n A 1 183 ASP 183 183 183 ASP ASP A . n A 1 184 TRP 184 184 184 TRP TRP A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 THR 186 186 186 THR THR A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 ASN 190 190 190 ASN ASN A . n A 1 191 LYS 191 191 191 LYS LYS A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 ASN 193 193 193 ASN ASN A . n A 1 194 GLN 194 194 194 GLN GLN A . n A 1 195 ARG 195 195 195 ARG ARG A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 ILE 198 198 198 ILE ILE A . n A 1 199 SER 199 199 199 SER SER A . n A 1 200 MET 200 200 200 MET MET A . n A 1 201 ILE 201 201 201 ILE ILE A . n A 1 202 PRO 202 202 202 PRO PRO A . n A 1 203 SER 203 203 203 SER SER A . n A 1 204 ASN 204 204 204 ASN ASN A . n A 1 205 VAL 205 205 205 VAL VAL A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 LYS 207 207 207 LYS LYS A . n A 1 208 VAL 208 208 208 VAL VAL A . n A 1 209 ALA 209 209 209 ALA ALA A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 THR 211 211 211 THR THR A . n A 1 212 GLY 212 212 212 GLY GLY A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 SER 214 214 214 SER SER A . n A 1 215 GLU 215 215 215 GLU GLU A . n A 1 216 ARG 216 216 216 ARG ARG A . n A 1 217 ASN 217 217 217 ASN ASN A . n A 1 218 GLU 218 218 218 GLU GLU A . n A 1 219 ILE 219 219 219 ILE ILE A . n A 1 220 GLU 220 220 220 GLU GLU A . n A 1 221 GLU 221 221 221 GLU GLU A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 ARG 223 223 223 ARG ARG A . n A 1 224 LYS 224 224 224 LYS LYS A . n A 1 225 LEU 225 225 225 LEU LEU A . n A 1 226 GLY 226 226 226 GLY GLY A . n A 1 227 VAL 227 227 227 VAL VAL A . n A 1 228 ASN 228 228 228 ASN ASN A . n A 1 229 ALA 229 229 229 ALA ALA A . n A 1 230 PHE 230 230 230 PHE PHE A . n A 1 231 SER 231 231 231 SER SER A . n A 1 232 ILE 232 232 232 ILE ILE A . n A 1 233 ILE 233 233 233 ILE ILE A . n A 1 234 SER 234 234 234 SER SER A . n A 1 235 SER 235 235 235 SER SER A . n A 1 236 LEU 236 236 236 LEU LEU A . n A 1 237 MET 237 237 237 MET MET A . n A 1 238 ARG 238 238 238 ARG ARG A . n A 1 239 ASN 239 239 239 ASN ASN A . n A 1 240 PRO 240 240 240 PRO PRO A . n A 1 241 GLU 241 241 241 GLU GLU A . n A 1 242 LYS 242 242 242 LYS LYS A . n A 1 243 ILE 243 243 243 ILE ILE A . n A 1 244 LYS 244 244 244 LYS LYS A . n A 1 245 GLU 245 245 245 GLU GLU A . n A 1 246 LEU 246 246 246 LEU LEU A . n A 1 247 ILE 247 247 247 ILE ILE A . n A 1 248 GLU 248 248 248 GLU GLU A . n A 1 249 GLY 249 249 249 GLY GLY A . n A 1 250 SER 250 250 ? ? ? A . n A 1 251 LEU 251 251 ? ? ? A . n A 1 252 GLU 252 252 ? ? ? A . n A 1 253 HIS 253 253 ? ? ? A . n A 1 254 HIS 254 254 ? ? ? A . n A 1 255 HIS 255 255 ? ? ? A . n A 1 256 HIS 256 256 ? ? ? A . n A 1 257 HIS 257 257 ? ? ? A . n A 1 258 HIS 258 258 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 401 401 SO4 SO4 A . C 2 SO4 1 402 402 SO4 SO4 A . D 3 HOH 1 301 301 HOH HOH A . D 3 HOH 2 302 302 HOH HOH A . D 3 HOH 3 305 305 HOH HOH A . D 3 HOH 4 306 306 HOH HOH A . D 3 HOH 5 307 307 HOH HOH A . D 3 HOH 6 308 308 HOH HOH A . D 3 HOH 7 309 309 HOH HOH A . D 3 HOH 8 310 310 HOH HOH A . D 3 HOH 9 311 311 HOH HOH A . D 3 HOH 10 312 312 HOH HOH A . D 3 HOH 11 313 313 HOH HOH A . D 3 HOH 12 314 314 HOH HOH A . D 3 HOH 13 315 315 HOH HOH A . D 3 HOH 14 316 316 HOH HOH A . D 3 HOH 15 317 317 HOH HOH A . D 3 HOH 16 318 318 HOH HOH A . D 3 HOH 17 319 319 HOH HOH A . D 3 HOH 18 320 320 HOH HOH A . D 3 HOH 19 321 321 HOH HOH A . D 3 HOH 20 322 322 HOH HOH A . D 3 HOH 21 323 323 HOH HOH A . D 3 HOH 22 324 324 HOH HOH A . D 3 HOH 23 325 325 HOH HOH A . D 3 HOH 24 326 326 HOH HOH A . D 3 HOH 25 327 327 HOH HOH A . D 3 HOH 26 328 328 HOH HOH A . D 3 HOH 27 329 329 HOH HOH A . D 3 HOH 28 330 330 HOH HOH A . D 3 HOH 29 332 332 HOH HOH A . D 3 HOH 30 333 333 HOH HOH A . D 3 HOH 31 334 334 HOH HOH A . D 3 HOH 32 335 335 HOH HOH A . D 3 HOH 33 336 336 HOH HOH A . D 3 HOH 34 337 337 HOH HOH A . D 3 HOH 35 338 338 HOH HOH A . D 3 HOH 36 339 339 HOH HOH A . D 3 HOH 37 341 341 HOH HOH A . D 3 HOH 38 342 342 HOH HOH A . D 3 HOH 39 343 343 HOH HOH A . D 3 HOH 40 344 344 HOH HOH A . D 3 HOH 41 345 345 HOH HOH A . D 3 HOH 42 346 346 HOH HOH A . D 3 HOH 43 347 347 HOH HOH A . D 3 HOH 44 348 348 HOH HOH A . D 3 HOH 45 349 349 HOH HOH A . D 3 HOH 46 350 350 HOH HOH A . D 3 HOH 47 351 351 HOH HOH A . D 3 HOH 48 353 353 HOH HOH A . D 3 HOH 49 354 354 HOH HOH A . D 3 HOH 50 355 355 HOH HOH A . D 3 HOH 51 356 356 HOH HOH A . D 3 HOH 52 357 357 HOH HOH A . D 3 HOH 53 359 359 HOH HOH A . D 3 HOH 54 360 360 HOH HOH A . D 3 HOH 55 361 361 HOH HOH A . D 3 HOH 56 363 363 HOH HOH A . D 3 HOH 57 364 364 HOH HOH A . D 3 HOH 58 365 365 HOH HOH A . D 3 HOH 59 366 366 HOH HOH A . D 3 HOH 60 367 367 HOH HOH A . D 3 HOH 61 368 368 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id LLZ _pdbx_struct_mod_residue.label_seq_id 159 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id LLZ _pdbx_struct_mod_residue.auth_seq_id 159 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-11-23 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 'Phaser(CCP4)' 'model building' . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 'Phaser(CCP4)' phasing . ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 61 ? ? -154.32 88.03 2 1 SER A 214 ? ? 89.49 -91.69 3 1 GLU A 215 ? ? 64.22 153.90 4 1 ARG A 216 ? ? 69.18 -50.44 5 1 ILE A 233 ? ? -118.31 -83.31 6 1 GLU A 248 ? ? -89.52 -91.01 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 27 ? CG ? A GLN 27 CG 2 1 Y 1 A GLN 27 ? CD ? A GLN 27 CD 3 1 Y 1 A GLN 27 ? OE1 ? A GLN 27 OE1 4 1 Y 1 A GLN 27 ? NE2 ? A GLN 27 NE2 5 1 Y 1 A ARG 28 ? CG ? A ARG 28 CG 6 1 Y 1 A ARG 28 ? CD ? A ARG 28 CD 7 1 Y 1 A ARG 28 ? NE ? A ARG 28 NE 8 1 Y 1 A ARG 28 ? CZ ? A ARG 28 CZ 9 1 Y 1 A ARG 28 ? NH1 ? A ARG 28 NH1 10 1 Y 1 A ARG 28 ? NH2 ? A ARG 28 NH2 11 1 Y 1 A ARG 216 ? CG ? A ARG 216 CG 12 1 Y 1 A ARG 216 ? CD ? A ARG 216 CD 13 1 Y 1 A ARG 216 ? NE ? A ARG 216 NE 14 1 Y 1 A ARG 216 ? CZ ? A ARG 216 CZ 15 1 Y 1 A ARG 216 ? NH1 ? A ARG 216 NH1 16 1 Y 1 A ARG 216 ? NH2 ? A ARG 216 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 250 ? A SER 250 3 1 Y 1 A LEU 251 ? A LEU 251 4 1 Y 1 A GLU 252 ? A GLU 252 5 1 Y 1 A HIS 253 ? A HIS 253 6 1 Y 1 A HIS 254 ? A HIS 254 7 1 Y 1 A HIS 255 ? A HIS 255 8 1 Y 1 A HIS 256 ? A HIS 256 9 1 Y 1 A HIS 257 ? A HIS 257 10 1 Y 1 A HIS 258 ? A HIS 258 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #