data_3NM6 # _entry.id 3NM6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3NM6 RCSB RCSB060001 WWPDB D_1000060001 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3NM4 . unspecified PDB 3NM5 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NM6 _pdbx_database_status.recvd_initial_deposition_date 2010-06-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ronning, D.R.' 1 'Iacopelli, N.M.' 2 # _citation.id primary _citation.title ;Enzyme-ligand interactions that drive active site rearrangements in the Helicobacter pylori 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. ; _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 19 _citation.page_first 2498 _citation.page_last 2510 _citation.year 2010 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20954236 _citation.pdbx_database_id_DOI 10.1002/pro.524 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ronning, D.R.' 1 primary 'Iacopelli, N.M.' 2 primary 'Mishra, V.' 3 # _cell.entry_id 3NM6 _cell.length_a 81.350 _cell.length_b 81.350 _cell.length_c 67.595 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NM6 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MTA/SAH nucleosidase' 25049.900 1 3.2.2.9 ? ? ? 2 non-polymer syn ADENINE 135.127 1 ? ? ? ? 3 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 5 water nat water 18.015 158 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;5'-methylthioadenosine nucleosidase, S-adenosylhomocysteine nucleosidase ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAG SLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERK EFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL ; _entity_poly.pdbx_seq_one_letter_code_can ;MQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAG SLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERK EFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 LYS n 1 4 ILE n 1 5 GLY n 1 6 ILE n 1 7 LEU n 1 8 GLY n 1 9 ALA n 1 10 MET n 1 11 ARG n 1 12 GLU n 1 13 GLU n 1 14 ILE n 1 15 THR n 1 16 PRO n 1 17 ILE n 1 18 LEU n 1 19 GLU n 1 20 LEU n 1 21 PHE n 1 22 GLY n 1 23 VAL n 1 24 ASP n 1 25 PHE n 1 26 GLU n 1 27 GLU n 1 28 ILE n 1 29 PRO n 1 30 LEU n 1 31 GLY n 1 32 GLY n 1 33 ASN n 1 34 VAL n 1 35 PHE n 1 36 HIS n 1 37 LYS n 1 38 GLY n 1 39 VAL n 1 40 TYR n 1 41 HIS n 1 42 ASN n 1 43 LYS n 1 44 GLU n 1 45 ILE n 1 46 ILE n 1 47 VAL n 1 48 ALA n 1 49 TYR n 1 50 SER n 1 51 LYS n 1 52 ILE n 1 53 GLY n 1 54 LYS n 1 55 VAL n 1 56 HIS n 1 57 SER n 1 58 THR n 1 59 LEU n 1 60 THR n 1 61 THR n 1 62 THR n 1 63 SER n 1 64 MET n 1 65 ILE n 1 66 LEU n 1 67 ALA n 1 68 PHE n 1 69 GLY n 1 70 VAL n 1 71 GLN n 1 72 LYS n 1 73 VAL n 1 74 LEU n 1 75 PHE n 1 76 SER n 1 77 GLY n 1 78 VAL n 1 79 ALA n 1 80 GLY n 1 81 SER n 1 82 LEU n 1 83 VAL n 1 84 LYS n 1 85 ASP n 1 86 LEU n 1 87 LYS n 1 88 ILE n 1 89 ASN n 1 90 ASP n 1 91 LEU n 1 92 LEU n 1 93 VAL n 1 94 ALA n 1 95 THR n 1 96 GLN n 1 97 LEU n 1 98 VAL n 1 99 GLN n 1 100 HIS n 1 101 ASP n 1 102 VAL n 1 103 ASP n 1 104 LEU n 1 105 SER n 1 106 ALA n 1 107 PHE n 1 108 ASP n 1 109 HIS n 1 110 PRO n 1 111 LEU n 1 112 GLY n 1 113 PHE n 1 114 ILE n 1 115 PRO n 1 116 GLU n 1 117 SER n 1 118 ALA n 1 119 ILE n 1 120 PHE n 1 121 ILE n 1 122 GLU n 1 123 THR n 1 124 SER n 1 125 GLY n 1 126 SER n 1 127 LEU n 1 128 ASN n 1 129 ALA n 1 130 LEU n 1 131 ALA n 1 132 LYS n 1 133 LYS n 1 134 ILE n 1 135 ALA n 1 136 ASN n 1 137 GLU n 1 138 GLN n 1 139 HIS n 1 140 ILE n 1 141 ALA n 1 142 LEU n 1 143 LYS n 1 144 GLU n 1 145 GLY n 1 146 VAL n 1 147 ILE n 1 148 ALA n 1 149 SER n 1 150 GLY n 1 151 ASP n 1 152 GLN n 1 153 PHE n 1 154 VAL n 1 155 HIS n 1 156 SER n 1 157 LYS n 1 158 GLU n 1 159 ARG n 1 160 LYS n 1 161 GLU n 1 162 PHE n 1 163 LEU n 1 164 VAL n 1 165 SER n 1 166 GLU n 1 167 PHE n 1 168 LYS n 1 169 ALA n 1 170 SER n 1 171 ALA n 1 172 VAL n 1 173 GLU n 1 174 MET n 1 175 GLU n 1 176 GLY n 1 177 ALA n 1 178 SER n 1 179 VAL n 1 180 ALA n 1 181 PHE n 1 182 VAL n 1 183 CYS n 1 184 GLN n 1 185 LYS n 1 186 PHE n 1 187 GLY n 1 188 VAL n 1 189 PRO n 1 190 CYS n 1 191 CYS n 1 192 VAL n 1 193 LEU n 1 194 ARG n 1 195 SER n 1 196 ILE n 1 197 SER n 1 198 ASP n 1 199 ASN n 1 200 ALA n 1 201 ASP n 1 202 GLU n 1 203 LYS n 1 204 ALA n 1 205 GLY n 1 206 MET n 1 207 SER n 1 208 PHE n 1 209 ASP n 1 210 GLU n 1 211 PHE n 1 212 LEU n 1 213 GLU n 1 214 LYS n 1 215 SER n 1 216 ALA n 1 217 HIS n 1 218 THR n 1 219 SER n 1 220 ALA n 1 221 LYS n 1 222 PHE n 1 223 LEU n 1 224 LYS n 1 225 SER n 1 226 MET n 1 227 VAL n 1 228 ASP n 1 229 GLU n 1 230 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Campylobacter pylori' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'jhp_0082, mtn, mtnN, Pfs' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain J99 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Helicobacter pylori' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 85963 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MTNN_HELPJ _struct_ref.pdbx_db_accession Q9ZMY2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAG SLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERK EFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3NM6 _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 230 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9ZMY2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 230 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 230 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADE non-polymer . ADENINE ? 'C5 H5 N5' 135.127 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3NM6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_percent_sol 52.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '16 % w/v PEG 8000, 0.1 M Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2009-07-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator diamond _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.078 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.078 # _reflns.entry_id 3NM6 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.6 _reflns.number_obs 33924 _reflns.number_all ? _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.050 _reflns.pdbx_netI_over_sigmaI 11.5 _reflns.B_iso_Wilson_estimate 17.51 _reflns.pdbx_redundancy 11.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 3NM6 _refine.ls_number_reflns_obs 33313 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.852 _refine.ls_d_res_high 1.602 _refine.ls_percent_reflns_obs 96.95 _refine.ls_R_factor_obs 0.1429 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1414 _refine.ls_R_factor_R_free 0.1707 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.95 _refine.ls_number_reflns_R_free 1650 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 3.7712 _refine.aniso_B[2][2] 3.7712 _refine.aniso_B[3][3] -7.5423 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.400 _refine.solvent_model_param_bsol 60.111 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.17 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1751 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 158 _refine_hist.number_atoms_total 1943 _refine_hist.d_res_high 1.602 _refine_hist.d_res_low 34.852 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 1858 'X-RAY DIFFRACTION' ? f_angle_d 0.945 ? ? 2496 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.300 ? ? 678 'X-RAY DIFFRACTION' ? f_chiral_restr 0.066 ? ? 290 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 317 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.6016 1.6588 2959 0.0937 92.00 0.1644 . . 148 . . . . 'X-RAY DIFFRACTION' . 1.6588 1.7252 2970 0.0855 93.00 0.1344 . . 164 . . . . 'X-RAY DIFFRACTION' . 1.7252 1.8037 3127 0.0841 96.00 0.1417 . . 137 . . . . 'X-RAY DIFFRACTION' . 1.8037 1.8988 3125 0.0891 97.00 0.1518 . . 172 . . . . 'X-RAY DIFFRACTION' . 1.8988 2.0178 3104 0.0959 97.00 0.1521 . . 185 . . . . 'X-RAY DIFFRACTION' . 2.0178 2.1735 3220 0.1092 98.00 0.1490 . . 155 . . . . 'X-RAY DIFFRACTION' . 2.1735 2.3922 3228 0.1236 99.00 0.1556 . . 164 . . . . 'X-RAY DIFFRACTION' . 2.3922 2.7383 3214 0.1485 99.00 0.1702 . . 190 . . . . 'X-RAY DIFFRACTION' . 2.7383 3.4494 3296 0.1615 100.00 0.1876 . . 165 . . . . 'X-RAY DIFFRACTION' . 3.4494 34.8599 3420 0.1656 99.00 0.1794 . . 170 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3NM6 _struct.title 'Helicobacter pylori MTAN complexed with adenine and tris' _struct.pdbx_descriptor 'MTA/SAH nucleosidase (E.C.3.2.2.9)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NM6 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'nucleosidase, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 10 ? GLY A 22 ? MET B 10 GLY B 22 1 ? 13 HELX_P HELX_P2 2 GLY A 53 ? GLY A 69 ? GLY B 53 GLY B 69 1 ? 17 HELX_P HELX_P3 3 LEU A 104 ? ASP A 108 ? LEU B 104 ASP B 108 5 ? 5 HELX_P HELX_P4 4 SER A 124 ? GLN A 138 ? SER B 124 GLN B 138 1 ? 15 HELX_P HELX_P5 5 SER A 156 ? LYS A 168 ? SER B 156 LYS B 168 1 ? 13 HELX_P HELX_P6 6 GLU A 175 ? GLY A 187 ? GLU B 175 GLY B 187 1 ? 13 HELX_P HELX_P7 7 LYS A 203 ? ASP A 228 ? LYS B 203 ASP B 228 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 9 ? B ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? parallel A 7 8 ? parallel A 8 9 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 26 ? LEU A 30 ? GLU B 26 LEU B 30 A 2 ASN A 33 ? TYR A 40 ? ASN B 33 TYR B 40 A 3 LYS A 43 ? TYR A 49 ? LYS B 43 TYR B 49 A 4 LYS A 3 ? GLY A 8 ? LYS B 3 GLY B 8 A 5 LYS A 72 ? SER A 81 ? LYS B 72 SER B 81 A 6 ALA A 171 ? GLU A 173 ? ALA B 171 GLU B 173 A 7 LEU A 142 ? SER A 149 ? LEU B 142 SER B 149 A 8 LEU A 91 ? GLN A 99 ? LEU B 91 GLN B 99 A 9 PHE A 120 ? GLU A 122 ? PHE B 120 GLU B 122 B 1 GLU A 26 ? LEU A 30 ? GLU B 26 LEU B 30 B 2 ASN A 33 ? TYR A 40 ? ASN B 33 TYR B 40 B 3 LYS A 43 ? TYR A 49 ? LYS B 43 TYR B 49 B 4 LYS A 3 ? GLY A 8 ? LYS B 3 GLY B 8 B 5 LYS A 72 ? SER A 81 ? LYS B 72 SER B 81 B 6 CYS A 190 ? ASP A 198 ? CYS B 190 ASP B 198 B 7 LEU A 91 ? GLN A 99 ? LEU B 91 GLN B 99 B 8 PHE A 120 ? GLU A 122 ? PHE B 120 GLU B 122 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 28 ? N ILE B 28 O PHE A 35 ? O PHE B 35 A 2 3 N HIS A 36 ? N HIS B 36 O VAL A 47 ? O VAL B 47 A 3 4 O ILE A 46 ? O ILE B 46 N ILE A 6 ? N ILE B 6 A 4 5 N GLY A 5 ? N GLY B 5 O LYS A 72 ? O LYS B 72 A 5 6 N GLY A 80 ? N GLY B 80 O VAL A 172 ? O VAL B 172 A 6 7 O ALA A 171 ? O ALA B 171 N ALA A 148 ? N ALA B 148 A 7 8 O SER A 149 ? O SER B 149 N VAL A 98 ? N VAL B 98 A 8 9 N LEU A 97 ? N LEU B 97 O ILE A 121 ? O ILE B 121 B 1 2 N ILE A 28 ? N ILE B 28 O PHE A 35 ? O PHE B 35 B 2 3 N HIS A 36 ? N HIS B 36 O VAL A 47 ? O VAL B 47 B 3 4 O ILE A 46 ? O ILE B 46 N ILE A 6 ? N ILE B 6 B 4 5 N GLY A 5 ? N GLY B 5 O LYS A 72 ? O LYS B 72 B 5 6 N PHE A 75 ? N PHE B 75 O CYS A 191 ? O CYS B 191 B 6 7 O ARG A 194 ? O ARG B 194 N LEU A 92 ? N LEU B 92 B 7 8 N LEU A 97 ? N LEU B 97 O ILE A 121 ? O ILE B 121 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE ADE B 231' AC2 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE TRS B 232' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO B 1001' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO B 1002' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE EDO B 1003' AC6 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE EDO B 1004' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 VAL A 78 ? VAL B 78 . ? 1_555 ? 2 AC1 12 ALA A 79 ? ALA B 79 . ? 1_555 ? 3 AC1 12 GLY A 80 ? GLY B 80 . ? 1_555 ? 4 AC1 12 PHE A 153 ? PHE B 153 . ? 1_555 ? 5 AC1 12 VAL A 154 ? VAL B 154 . ? 1_555 ? 6 AC1 12 VAL A 172 ? VAL B 172 . ? 1_555 ? 7 AC1 12 GLU A 173 ? GLU B 173 . ? 1_555 ? 8 AC1 12 MET A 174 ? MET B 174 . ? 1_555 ? 9 AC1 12 SER A 197 ? SER B 197 . ? 1_555 ? 10 AC1 12 ASP A 198 ? ASP B 198 . ? 1_555 ? 11 AC1 12 ALA A 200 ? ALA B 200 . ? 1_555 ? 12 AC1 12 TRS C . ? TRS B 232 . ? 1_555 ? 13 AC2 10 ALA A 9 ? ALA B 9 . ? 1_555 ? 14 AC2 10 MET A 10 ? MET B 10 . ? 1_555 ? 15 AC2 10 GLU A 13 ? GLU B 13 . ? 1_555 ? 16 AC2 10 VAL A 78 ? VAL B 78 . ? 1_555 ? 17 AC2 10 GLU A 173 ? GLU B 173 . ? 1_555 ? 18 AC2 10 MET A 174 ? MET B 174 . ? 1_555 ? 19 AC2 10 GLU A 175 ? GLU B 175 . ? 1_555 ? 20 AC2 10 ARG A 194 ? ARG B 194 . ? 1_555 ? 21 AC2 10 PHE A 208 ? PHE B 208 . ? 1_555 ? 22 AC2 10 ADE B . ? ADE B 231 . ? 1_555 ? 23 AC3 6 SER A 126 ? SER B 126 . ? 1_555 ? 24 AC3 6 LEU A 127 ? LEU B 127 . ? 1_555 ? 25 AC3 6 LEU A 130 ? LEU B 130 . ? 1_555 ? 26 AC3 6 LEU A 230 ? LEU B 230 . ? 1_555 ? 27 AC3 6 HOH H . ? HOH B 346 . ? 2_654 ? 28 AC3 6 HOH H . ? HOH B 383 . ? 2_654 ? 29 AC4 5 ASN A 33 ? ASN B 33 . ? 1_555 ? 30 AC4 5 VAL A 34 ? VAL B 34 . ? 1_555 ? 31 AC4 5 TYR A 49 ? TYR B 49 . ? 1_555 ? 32 AC4 5 HOH H . ? HOH B 260 . ? 1_555 ? 33 AC4 5 HOH H . ? HOH B 341 . ? 1_555 ? 34 AC5 2 PHE A 68 ? PHE B 68 . ? 1_555 ? 35 AC5 2 HOH H . ? HOH B 387 . ? 1_555 ? 36 AC6 2 GLU A 137 ? GLU B 137 . ? 1_555 ? 37 AC6 2 GLU A 229 ? GLU B 229 . ? 1_555 ? # _database_PDB_matrix.entry_id 3NM6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3NM6 _atom_sites.fract_transf_matrix[1][1] 0.012293 _atom_sites.fract_transf_matrix[1][2] 0.007097 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014194 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014794 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? B . n A 1 2 GLN 2 2 2 GLN GLN B . n A 1 3 LYS 3 3 3 LYS LYS B . n A 1 4 ILE 4 4 4 ILE ILE B . n A 1 5 GLY 5 5 5 GLY GLY B . n A 1 6 ILE 6 6 6 ILE ILE B . n A 1 7 LEU 7 7 7 LEU LEU B . n A 1 8 GLY 8 8 8 GLY GLY B . n A 1 9 ALA 9 9 9 ALA ALA B . n A 1 10 MET 10 10 10 MET MET B . n A 1 11 ARG 11 11 11 ARG ARG B . n A 1 12 GLU 12 12 12 GLU GLU B . n A 1 13 GLU 13 13 13 GLU GLU B . n A 1 14 ILE 14 14 14 ILE ILE B . n A 1 15 THR 15 15 15 THR THR B . n A 1 16 PRO 16 16 16 PRO PRO B . n A 1 17 ILE 17 17 17 ILE ILE B . n A 1 18 LEU 18 18 18 LEU LEU B . n A 1 19 GLU 19 19 19 GLU GLU B . n A 1 20 LEU 20 20 20 LEU LEU B . n A 1 21 PHE 21 21 21 PHE PHE B . n A 1 22 GLY 22 22 22 GLY GLY B . n A 1 23 VAL 23 23 23 VAL VAL B . n A 1 24 ASP 24 24 24 ASP ASP B . n A 1 25 PHE 25 25 25 PHE PHE B . n A 1 26 GLU 26 26 26 GLU GLU B . n A 1 27 GLU 27 27 27 GLU GLU B . n A 1 28 ILE 28 28 28 ILE ILE B . n A 1 29 PRO 29 29 29 PRO PRO B . n A 1 30 LEU 30 30 30 LEU LEU B . n A 1 31 GLY 31 31 31 GLY GLY B . n A 1 32 GLY 32 32 32 GLY GLY B . n A 1 33 ASN 33 33 33 ASN ASN B . n A 1 34 VAL 34 34 34 VAL VAL B . n A 1 35 PHE 35 35 35 PHE PHE B . n A 1 36 HIS 36 36 36 HIS HIS B . n A 1 37 LYS 37 37 37 LYS LYS B . n A 1 38 GLY 38 38 38 GLY GLY B . n A 1 39 VAL 39 39 39 VAL VAL B . n A 1 40 TYR 40 40 40 TYR TYR B . n A 1 41 HIS 41 41 41 HIS HIS B . n A 1 42 ASN 42 42 42 ASN ASN B . n A 1 43 LYS 43 43 43 LYS LYS B . n A 1 44 GLU 44 44 44 GLU GLU B . n A 1 45 ILE 45 45 45 ILE ILE B . n A 1 46 ILE 46 46 46 ILE ILE B . n A 1 47 VAL 47 47 47 VAL VAL B . n A 1 48 ALA 48 48 48 ALA ALA B . n A 1 49 TYR 49 49 49 TYR TYR B . n A 1 50 SER 50 50 50 SER SER B . n A 1 51 LYS 51 51 51 LYS LYS B . n A 1 52 ILE 52 52 52 ILE ILE B . n A 1 53 GLY 53 53 53 GLY GLY B . n A 1 54 LYS 54 54 54 LYS LYS B . n A 1 55 VAL 55 55 55 VAL VAL B . n A 1 56 HIS 56 56 56 HIS HIS B . n A 1 57 SER 57 57 57 SER SER B . n A 1 58 THR 58 58 58 THR THR B . n A 1 59 LEU 59 59 59 LEU LEU B . n A 1 60 THR 60 60 60 THR THR B . n A 1 61 THR 61 61 61 THR THR B . n A 1 62 THR 62 62 62 THR THR B . n A 1 63 SER 63 63 63 SER SER B . n A 1 64 MET 64 64 64 MET MET B . n A 1 65 ILE 65 65 65 ILE ILE B . n A 1 66 LEU 66 66 66 LEU LEU B . n A 1 67 ALA 67 67 67 ALA ALA B . n A 1 68 PHE 68 68 68 PHE PHE B . n A 1 69 GLY 69 69 69 GLY GLY B . n A 1 70 VAL 70 70 70 VAL VAL B . n A 1 71 GLN 71 71 71 GLN GLN B . n A 1 72 LYS 72 72 72 LYS LYS B . n A 1 73 VAL 73 73 73 VAL VAL B . n A 1 74 LEU 74 74 74 LEU LEU B . n A 1 75 PHE 75 75 75 PHE PHE B . n A 1 76 SER 76 76 76 SER SER B . n A 1 77 GLY 77 77 77 GLY GLY B . n A 1 78 VAL 78 78 78 VAL VAL B . n A 1 79 ALA 79 79 79 ALA ALA B . n A 1 80 GLY 80 80 80 GLY GLY B . n A 1 81 SER 81 81 81 SER SER B . n A 1 82 LEU 82 82 82 LEU LEU B . n A 1 83 VAL 83 83 83 VAL VAL B . n A 1 84 LYS 84 84 84 LYS LYS B . n A 1 85 ASP 85 85 85 ASP ASP B . n A 1 86 LEU 86 86 86 LEU LEU B . n A 1 87 LYS 87 87 87 LYS LYS B . n A 1 88 ILE 88 88 88 ILE ILE B . n A 1 89 ASN 89 89 89 ASN ASN B . n A 1 90 ASP 90 90 90 ASP ASP B . n A 1 91 LEU 91 91 91 LEU LEU B . n A 1 92 LEU 92 92 92 LEU LEU B . n A 1 93 VAL 93 93 93 VAL VAL B . n A 1 94 ALA 94 94 94 ALA ALA B . n A 1 95 THR 95 95 95 THR THR B . n A 1 96 GLN 96 96 96 GLN GLN B . n A 1 97 LEU 97 97 97 LEU LEU B . n A 1 98 VAL 98 98 98 VAL VAL B . n A 1 99 GLN 99 99 99 GLN GLN B . n A 1 100 HIS 100 100 100 HIS HIS B . n A 1 101 ASP 101 101 101 ASP ASP B . n A 1 102 VAL 102 102 102 VAL VAL B . n A 1 103 ASP 103 103 103 ASP ASP B . n A 1 104 LEU 104 104 104 LEU LEU B . n A 1 105 SER 105 105 105 SER SER B . n A 1 106 ALA 106 106 106 ALA ALA B . n A 1 107 PHE 107 107 107 PHE PHE B . n A 1 108 ASP 108 108 108 ASP ASP B . n A 1 109 HIS 109 109 109 HIS HIS B . n A 1 110 PRO 110 110 110 PRO PRO B . n A 1 111 LEU 111 111 111 LEU LEU B . n A 1 112 GLY 112 112 112 GLY GLY B . n A 1 113 PHE 113 113 113 PHE PHE B . n A 1 114 ILE 114 114 114 ILE ILE B . n A 1 115 PRO 115 115 115 PRO PRO B . n A 1 116 GLU 116 116 116 GLU GLU B . n A 1 117 SER 117 117 117 SER SER B . n A 1 118 ALA 118 118 118 ALA ALA B . n A 1 119 ILE 119 119 119 ILE ILE B . n A 1 120 PHE 120 120 120 PHE PHE B . n A 1 121 ILE 121 121 121 ILE ILE B . n A 1 122 GLU 122 122 122 GLU GLU B . n A 1 123 THR 123 123 123 THR THR B . n A 1 124 SER 124 124 124 SER SER B . n A 1 125 GLY 125 125 125 GLY GLY B . n A 1 126 SER 126 126 126 SER SER B . n A 1 127 LEU 127 127 127 LEU LEU B . n A 1 128 ASN 128 128 128 ASN ASN B . n A 1 129 ALA 129 129 129 ALA ALA B . n A 1 130 LEU 130 130 130 LEU LEU B . n A 1 131 ALA 131 131 131 ALA ALA B . n A 1 132 LYS 132 132 132 LYS LYS B . n A 1 133 LYS 133 133 133 LYS LYS B . n A 1 134 ILE 134 134 134 ILE ILE B . n A 1 135 ALA 135 135 135 ALA ALA B . n A 1 136 ASN 136 136 136 ASN ASN B . n A 1 137 GLU 137 137 137 GLU GLU B . n A 1 138 GLN 138 138 138 GLN GLN B . n A 1 139 HIS 139 139 139 HIS HIS B . n A 1 140 ILE 140 140 140 ILE ILE B . n A 1 141 ALA 141 141 141 ALA ALA B . n A 1 142 LEU 142 142 142 LEU LEU B . n A 1 143 LYS 143 143 143 LYS LYS B . n A 1 144 GLU 144 144 144 GLU GLU B . n A 1 145 GLY 145 145 145 GLY GLY B . n A 1 146 VAL 146 146 146 VAL VAL B . n A 1 147 ILE 147 147 147 ILE ILE B . n A 1 148 ALA 148 148 148 ALA ALA B . n A 1 149 SER 149 149 149 SER SER B . n A 1 150 GLY 150 150 150 GLY GLY B . n A 1 151 ASP 151 151 151 ASP ASP B . n A 1 152 GLN 152 152 152 GLN GLN B . n A 1 153 PHE 153 153 153 PHE PHE B . n A 1 154 VAL 154 154 154 VAL VAL B . n A 1 155 HIS 155 155 155 HIS HIS B . n A 1 156 SER 156 156 156 SER SER B . n A 1 157 LYS 157 157 157 LYS LYS B . n A 1 158 GLU 158 158 158 GLU GLU B . n A 1 159 ARG 159 159 159 ARG ARG B . n A 1 160 LYS 160 160 160 LYS LYS B . n A 1 161 GLU 161 161 161 GLU GLU B . n A 1 162 PHE 162 162 162 PHE PHE B . n A 1 163 LEU 163 163 163 LEU LEU B . n A 1 164 VAL 164 164 164 VAL VAL B . n A 1 165 SER 165 165 165 SER SER B . n A 1 166 GLU 166 166 166 GLU GLU B . n A 1 167 PHE 167 167 167 PHE PHE B . n A 1 168 LYS 168 168 168 LYS LYS B . n A 1 169 ALA 169 169 169 ALA ALA B . n A 1 170 SER 170 170 170 SER SER B . n A 1 171 ALA 171 171 171 ALA ALA B . n A 1 172 VAL 172 172 172 VAL VAL B . n A 1 173 GLU 173 173 173 GLU GLU B . n A 1 174 MET 174 174 174 MET MET B . n A 1 175 GLU 175 175 175 GLU GLU B . n A 1 176 GLY 176 176 176 GLY GLY B . n A 1 177 ALA 177 177 177 ALA ALA B . n A 1 178 SER 178 178 178 SER SER B . n A 1 179 VAL 179 179 179 VAL VAL B . n A 1 180 ALA 180 180 180 ALA ALA B . n A 1 181 PHE 181 181 181 PHE PHE B . n A 1 182 VAL 182 182 182 VAL VAL B . n A 1 183 CYS 183 183 183 CYS CYS B . n A 1 184 GLN 184 184 184 GLN GLN B . n A 1 185 LYS 185 185 185 LYS LYS B . n A 1 186 PHE 186 186 186 PHE PHE B . n A 1 187 GLY 187 187 187 GLY GLY B . n A 1 188 VAL 188 188 188 VAL VAL B . n A 1 189 PRO 189 189 189 PRO PRO B . n A 1 190 CYS 190 190 190 CYS CYS B . n A 1 191 CYS 191 191 191 CYS CYS B . n A 1 192 VAL 192 192 192 VAL VAL B . n A 1 193 LEU 193 193 193 LEU LEU B . n A 1 194 ARG 194 194 194 ARG ARG B . n A 1 195 SER 195 195 195 SER SER B . n A 1 196 ILE 196 196 196 ILE ILE B . n A 1 197 SER 197 197 197 SER SER B . n A 1 198 ASP 198 198 198 ASP ASP B . n A 1 199 ASN 199 199 199 ASN ASN B . n A 1 200 ALA 200 200 200 ALA ALA B . n A 1 201 ASP 201 201 201 ASP ASP B . n A 1 202 GLU 202 202 202 GLU GLU B . n A 1 203 LYS 203 203 203 LYS LYS B . n A 1 204 ALA 204 204 204 ALA ALA B . n A 1 205 GLY 205 205 205 GLY GLY B . n A 1 206 MET 206 206 206 MET MET B . n A 1 207 SER 207 207 207 SER SER B . n A 1 208 PHE 208 208 208 PHE PHE B . n A 1 209 ASP 209 209 209 ASP ASP B . n A 1 210 GLU 210 210 210 GLU GLU B . n A 1 211 PHE 211 211 211 PHE PHE B . n A 1 212 LEU 212 212 212 LEU LEU B . n A 1 213 GLU 213 213 213 GLU GLU B . n A 1 214 LYS 214 214 214 LYS LYS B . n A 1 215 SER 215 215 215 SER SER B . n A 1 216 ALA 216 216 216 ALA ALA B . n A 1 217 HIS 217 217 217 HIS HIS B . n A 1 218 THR 218 218 218 THR THR B . n A 1 219 SER 219 219 219 SER SER B . n A 1 220 ALA 220 220 220 ALA ALA B . n A 1 221 LYS 221 221 221 LYS LYS B . n A 1 222 PHE 222 222 222 PHE PHE B . n A 1 223 LEU 223 223 223 LEU LEU B . n A 1 224 LYS 224 224 224 LYS LYS B . n A 1 225 SER 225 225 225 SER SER B . n A 1 226 MET 226 226 226 MET MET B . n A 1 227 VAL 227 227 227 VAL VAL B . n A 1 228 ASP 228 228 228 ASP ASP B . n A 1 229 GLU 229 229 229 GLU GLU B . n A 1 230 LEU 230 230 230 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADE 1 231 231 ADE ADE B . C 3 TRS 1 232 232 TRS TRS B . D 4 EDO 1 1001 1001 EDO EDO B . E 4 EDO 1 1002 1002 EDO EDO B . F 4 EDO 1 1003 1003 EDO EDO B . G 4 EDO 1 1004 1004 EDO EDO B . H 5 HOH 1 233 233 HOH HOH B . H 5 HOH 2 234 234 HOH HOH B . H 5 HOH 3 235 235 HOH HOH B . H 5 HOH 4 236 236 HOH HOH B . H 5 HOH 5 237 237 HOH HOH B . H 5 HOH 6 238 238 HOH HOH B . H 5 HOH 7 239 239 HOH HOH B . H 5 HOH 8 240 240 HOH HOH B . H 5 HOH 9 241 241 HOH HOH B . H 5 HOH 10 242 242 HOH HOH B . H 5 HOH 11 243 243 HOH HOH B . H 5 HOH 12 244 244 HOH HOH B . H 5 HOH 13 245 245 HOH HOH B . H 5 HOH 14 246 246 HOH HOH B . H 5 HOH 15 247 247 HOH HOH B . H 5 HOH 16 248 248 HOH HOH B . H 5 HOH 17 249 249 HOH HOH B . H 5 HOH 18 250 250 HOH HOH B . H 5 HOH 19 251 251 HOH HOH B . H 5 HOH 20 252 252 HOH HOH B . H 5 HOH 21 253 253 HOH HOH B . H 5 HOH 22 254 254 HOH HOH B . H 5 HOH 23 255 255 HOH HOH B . H 5 HOH 24 256 256 HOH HOH B . H 5 HOH 25 257 257 HOH HOH B . H 5 HOH 26 258 258 HOH HOH B . H 5 HOH 27 259 259 HOH HOH B . H 5 HOH 28 260 260 HOH HOH B . H 5 HOH 29 261 261 HOH HOH B . H 5 HOH 30 262 262 HOH HOH B . H 5 HOH 31 263 263 HOH HOH B . H 5 HOH 32 264 264 HOH HOH B . H 5 HOH 33 265 265 HOH HOH B . H 5 HOH 34 266 266 HOH HOH B . H 5 HOH 35 267 267 HOH HOH B . H 5 HOH 36 268 268 HOH HOH B . H 5 HOH 37 269 269 HOH HOH B . H 5 HOH 38 270 270 HOH HOH B . H 5 HOH 39 271 271 HOH HOH B . H 5 HOH 40 272 272 HOH HOH B . H 5 HOH 41 273 273 HOH HOH B . H 5 HOH 42 274 274 HOH HOH B . H 5 HOH 43 275 275 HOH HOH B . H 5 HOH 44 276 276 HOH HOH B . H 5 HOH 45 277 277 HOH HOH B . H 5 HOH 46 278 278 HOH HOH B . H 5 HOH 47 279 279 HOH HOH B . H 5 HOH 48 280 280 HOH HOH B . H 5 HOH 49 281 281 HOH HOH B . H 5 HOH 50 282 282 HOH HOH B . H 5 HOH 51 283 283 HOH HOH B . H 5 HOH 52 284 284 HOH HOH B . H 5 HOH 53 285 285 HOH HOH B . H 5 HOH 54 286 286 HOH HOH B . H 5 HOH 55 287 287 HOH HOH B . H 5 HOH 56 288 288 HOH HOH B . H 5 HOH 57 289 289 HOH HOH B . H 5 HOH 58 290 290 HOH HOH B . H 5 HOH 59 291 291 HOH HOH B . H 5 HOH 60 292 292 HOH HOH B . H 5 HOH 61 293 293 HOH HOH B . H 5 HOH 62 294 294 HOH HOH B . H 5 HOH 63 295 295 HOH HOH B . H 5 HOH 64 296 296 HOH HOH B . H 5 HOH 65 297 297 HOH HOH B . H 5 HOH 66 298 298 HOH HOH B . H 5 HOH 67 299 299 HOH HOH B . H 5 HOH 68 300 300 HOH HOH B . H 5 HOH 69 301 301 HOH HOH B . H 5 HOH 70 302 302 HOH HOH B . H 5 HOH 71 303 303 HOH HOH B . H 5 HOH 72 304 304 HOH HOH B . H 5 HOH 73 305 305 HOH HOH B . H 5 HOH 74 306 306 HOH HOH B . H 5 HOH 75 307 307 HOH HOH B . H 5 HOH 76 308 308 HOH HOH B . H 5 HOH 77 309 309 HOH HOH B . H 5 HOH 78 310 310 HOH HOH B . H 5 HOH 79 311 311 HOH HOH B . H 5 HOH 80 312 312 HOH HOH B . H 5 HOH 81 313 313 HOH HOH B . H 5 HOH 82 314 314 HOH HOH B . H 5 HOH 83 315 315 HOH HOH B . H 5 HOH 84 316 316 HOH HOH B . H 5 HOH 85 317 317 HOH HOH B . H 5 HOH 86 318 318 HOH HOH B . H 5 HOH 87 319 319 HOH HOH B . H 5 HOH 88 320 320 HOH HOH B . H 5 HOH 89 321 321 HOH HOH B . H 5 HOH 90 322 322 HOH HOH B . H 5 HOH 91 323 323 HOH HOH B . H 5 HOH 92 324 324 HOH HOH B . H 5 HOH 93 325 325 HOH HOH B . H 5 HOH 94 326 326 HOH HOH B . H 5 HOH 95 327 327 HOH HOH B . H 5 HOH 96 328 328 HOH HOH B . H 5 HOH 97 329 329 HOH HOH B . H 5 HOH 98 330 330 HOH HOH B . H 5 HOH 99 331 331 HOH HOH B . H 5 HOH 100 332 332 HOH HOH B . H 5 HOH 101 333 333 HOH HOH B . H 5 HOH 102 334 334 HOH HOH B . H 5 HOH 103 335 335 HOH HOH B . H 5 HOH 104 336 336 HOH HOH B . H 5 HOH 105 337 337 HOH HOH B . H 5 HOH 106 338 338 HOH HOH B . H 5 HOH 107 339 339 HOH HOH B . H 5 HOH 108 340 340 HOH HOH B . H 5 HOH 109 341 341 HOH HOH B . H 5 HOH 110 342 342 HOH HOH B . H 5 HOH 111 343 343 HOH HOH B . H 5 HOH 112 344 344 HOH HOH B . H 5 HOH 113 345 345 HOH HOH B . H 5 HOH 114 346 346 HOH HOH B . H 5 HOH 115 347 347 HOH HOH B . H 5 HOH 116 348 348 HOH HOH B . H 5 HOH 117 349 349 HOH HOH B . H 5 HOH 118 350 350 HOH HOH B . H 5 HOH 119 351 351 HOH HOH B . H 5 HOH 120 352 352 HOH HOH B . H 5 HOH 121 353 353 HOH HOH B . H 5 HOH 122 354 354 HOH HOH B . H 5 HOH 123 355 355 HOH HOH B . H 5 HOH 124 356 356 HOH HOH B . H 5 HOH 125 357 357 HOH HOH B . H 5 HOH 126 358 358 HOH HOH B . H 5 HOH 127 359 359 HOH HOH B . H 5 HOH 128 360 360 HOH HOH B . H 5 HOH 129 361 361 HOH HOH B . H 5 HOH 130 362 362 HOH HOH B . H 5 HOH 131 363 363 HOH HOH B . H 5 HOH 132 364 364 HOH HOH B . H 5 HOH 133 365 365 HOH HOH B . H 5 HOH 134 366 366 HOH HOH B . H 5 HOH 135 367 367 HOH HOH B . H 5 HOH 136 368 368 HOH HOH B . H 5 HOH 137 369 369 HOH HOH B . H 5 HOH 138 370 370 HOH HOH B . H 5 HOH 139 371 371 HOH HOH B . H 5 HOH 140 372 372 HOH HOH B . H 5 HOH 141 373 373 HOH HOH B . H 5 HOH 142 374 374 HOH HOH B . H 5 HOH 143 375 375 HOH HOH B . H 5 HOH 144 376 376 HOH HOH B . H 5 HOH 145 377 377 HOH HOH B . H 5 HOH 146 378 378 HOH HOH B . H 5 HOH 147 379 379 HOH HOH B . H 5 HOH 148 380 380 HOH HOH B . H 5 HOH 149 381 381 HOH HOH B . H 5 HOH 150 382 382 HOH HOH B . H 5 HOH 151 383 383 HOH HOH B . H 5 HOH 152 384 384 HOH HOH B . H 5 HOH 153 385 385 HOH HOH B . H 5 HOH 154 386 386 HOH HOH B . H 5 HOH 155 387 387 HOH HOH B . H 5 HOH 156 388 388 HOH HOH B . H 5 HOH 157 389 389 HOH HOH B . H 5 HOH 158 390 390 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5720 ? 1 MORE 5 ? 1 'SSA (A^2)' 17500 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_557 x-y,-y,-z+7/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 157.7216666667 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 322 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-11-24 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX 'model building' . ? 1 PHENIX refinement '(phenix.refine: 1.6_289)' ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 PHENIX phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS B 51 ? ? 82.59 161.44 2 1 ASN B 89 ? ? 84.58 -16.21 3 1 SER B 117 ? ? -137.71 -151.75 4 1 HIS B 155 ? ? -150.31 44.51 5 1 GLU B 175 ? ? -140.62 -20.60 6 1 ASP B 201 ? ? -113.35 -164.54 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id MET _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id MET _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENINE ADE 3 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 4 1,2-ETHANEDIOL EDO 5 water HOH #