data_3NM6 # _entry.id 3NM6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NM6 pdb_00003nm6 10.2210/pdb3nm6/pdb RCSB RCSB060001 ? ? WWPDB D_1000060001 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-11-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NM6 _pdbx_database_status.recvd_initial_deposition_date 2010-06-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3NM4 . unspecified PDB 3NM5 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ronning, D.R.' 1 'Iacopelli, N.M.' 2 # _citation.id primary _citation.title ;Enzyme-ligand interactions that drive active site rearrangements in the Helicobacter pylori 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. ; _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 19 _citation.page_first 2498 _citation.page_last 2510 _citation.year 2010 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20954236 _citation.pdbx_database_id_DOI 10.1002/pro.524 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ronning, D.R.' 1 ? primary 'Iacopelli, N.M.' 2 ? primary 'Mishra, V.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MTA/SAH nucleosidase' 25049.900 1 3.2.2.9 ? ? ? 2 non-polymer syn ADENINE 135.127 1 ? ? ? ? 3 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 5 water nat water 18.015 158 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;5'-methylthioadenosine nucleosidase, S-adenosylhomocysteine nucleosidase ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAG SLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERK EFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL ; _entity_poly.pdbx_seq_one_letter_code_can ;MQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAG SLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERK EFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENINE ADE 3 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 4 1,2-ETHANEDIOL EDO 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 LYS n 1 4 ILE n 1 5 GLY n 1 6 ILE n 1 7 LEU n 1 8 GLY n 1 9 ALA n 1 10 MET n 1 11 ARG n 1 12 GLU n 1 13 GLU n 1 14 ILE n 1 15 THR n 1 16 PRO n 1 17 ILE n 1 18 LEU n 1 19 GLU n 1 20 LEU n 1 21 PHE n 1 22 GLY n 1 23 VAL n 1 24 ASP n 1 25 PHE n 1 26 GLU n 1 27 GLU n 1 28 ILE n 1 29 PRO n 1 30 LEU n 1 31 GLY n 1 32 GLY n 1 33 ASN n 1 34 VAL n 1 35 PHE n 1 36 HIS n 1 37 LYS n 1 38 GLY n 1 39 VAL n 1 40 TYR n 1 41 HIS n 1 42 ASN n 1 43 LYS n 1 44 GLU n 1 45 ILE n 1 46 ILE n 1 47 VAL n 1 48 ALA n 1 49 TYR n 1 50 SER n 1 51 LYS n 1 52 ILE n 1 53 GLY n 1 54 LYS n 1 55 VAL n 1 56 HIS n 1 57 SER n 1 58 THR n 1 59 LEU n 1 60 THR n 1 61 THR n 1 62 THR n 1 63 SER n 1 64 MET n 1 65 ILE n 1 66 LEU n 1 67 ALA n 1 68 PHE n 1 69 GLY n 1 70 VAL n 1 71 GLN n 1 72 LYS n 1 73 VAL n 1 74 LEU n 1 75 PHE n 1 76 SER n 1 77 GLY n 1 78 VAL n 1 79 ALA n 1 80 GLY n 1 81 SER n 1 82 LEU n 1 83 VAL n 1 84 LYS n 1 85 ASP n 1 86 LEU n 1 87 LYS n 1 88 ILE n 1 89 ASN n 1 90 ASP n 1 91 LEU n 1 92 LEU n 1 93 VAL n 1 94 ALA n 1 95 THR n 1 96 GLN n 1 97 LEU n 1 98 VAL n 1 99 GLN n 1 100 HIS n 1 101 ASP n 1 102 VAL n 1 103 ASP n 1 104 LEU n 1 105 SER n 1 106 ALA n 1 107 PHE n 1 108 ASP n 1 109 HIS n 1 110 PRO n 1 111 LEU n 1 112 GLY n 1 113 PHE n 1 114 ILE n 1 115 PRO n 1 116 GLU n 1 117 SER n 1 118 ALA n 1 119 ILE n 1 120 PHE n 1 121 ILE n 1 122 GLU n 1 123 THR n 1 124 SER n 1 125 GLY n 1 126 SER n 1 127 LEU n 1 128 ASN n 1 129 ALA n 1 130 LEU n 1 131 ALA n 1 132 LYS n 1 133 LYS n 1 134 ILE n 1 135 ALA n 1 136 ASN n 1 137 GLU n 1 138 GLN n 1 139 HIS n 1 140 ILE n 1 141 ALA n 1 142 LEU n 1 143 LYS n 1 144 GLU n 1 145 GLY n 1 146 VAL n 1 147 ILE n 1 148 ALA n 1 149 SER n 1 150 GLY n 1 151 ASP n 1 152 GLN n 1 153 PHE n 1 154 VAL n 1 155 HIS n 1 156 SER n 1 157 LYS n 1 158 GLU n 1 159 ARG n 1 160 LYS n 1 161 GLU n 1 162 PHE n 1 163 LEU n 1 164 VAL n 1 165 SER n 1 166 GLU n 1 167 PHE n 1 168 LYS n 1 169 ALA n 1 170 SER n 1 171 ALA n 1 172 VAL n 1 173 GLU n 1 174 MET n 1 175 GLU n 1 176 GLY n 1 177 ALA n 1 178 SER n 1 179 VAL n 1 180 ALA n 1 181 PHE n 1 182 VAL n 1 183 CYS n 1 184 GLN n 1 185 LYS n 1 186 PHE n 1 187 GLY n 1 188 VAL n 1 189 PRO n 1 190 CYS n 1 191 CYS n 1 192 VAL n 1 193 LEU n 1 194 ARG n 1 195 SER n 1 196 ILE n 1 197 SER n 1 198 ASP n 1 199 ASN n 1 200 ALA n 1 201 ASP n 1 202 GLU n 1 203 LYS n 1 204 ALA n 1 205 GLY n 1 206 MET n 1 207 SER n 1 208 PHE n 1 209 ASP n 1 210 GLU n 1 211 PHE n 1 212 LEU n 1 213 GLU n 1 214 LYS n 1 215 SER n 1 216 ALA n 1 217 HIS n 1 218 THR n 1 219 SER n 1 220 ALA n 1 221 LYS n 1 222 PHE n 1 223 LEU n 1 224 LYS n 1 225 SER n 1 226 MET n 1 227 VAL n 1 228 ASP n 1 229 GLU n 1 230 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Campylobacter pylori' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'jhp_0082, mtn, mtnN, Pfs' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain J99 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Helicobacter pylori' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 85963 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADE non-polymer . ADENINE ? 'C5 H5 N5' 135.127 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? B . n A 1 2 GLN 2 2 2 GLN GLN B . n A 1 3 LYS 3 3 3 LYS LYS B . n A 1 4 ILE 4 4 4 ILE ILE B . n A 1 5 GLY 5 5 5 GLY GLY B . n A 1 6 ILE 6 6 6 ILE ILE B . n A 1 7 LEU 7 7 7 LEU LEU B . n A 1 8 GLY 8 8 8 GLY GLY B . n A 1 9 ALA 9 9 9 ALA ALA B . n A 1 10 MET 10 10 10 MET MET B . n A 1 11 ARG 11 11 11 ARG ARG B . n A 1 12 GLU 12 12 12 GLU GLU B . n A 1 13 GLU 13 13 13 GLU GLU B . n A 1 14 ILE 14 14 14 ILE ILE B . n A 1 15 THR 15 15 15 THR THR B . n A 1 16 PRO 16 16 16 PRO PRO B . n A 1 17 ILE 17 17 17 ILE ILE B . n A 1 18 LEU 18 18 18 LEU LEU B . n A 1 19 GLU 19 19 19 GLU GLU B . n A 1 20 LEU 20 20 20 LEU LEU B . n A 1 21 PHE 21 21 21 PHE PHE B . n A 1 22 GLY 22 22 22 GLY GLY B . n A 1 23 VAL 23 23 23 VAL VAL B . n A 1 24 ASP 24 24 24 ASP ASP B . n A 1 25 PHE 25 25 25 PHE PHE B . n A 1 26 GLU 26 26 26 GLU GLU B . n A 1 27 GLU 27 27 27 GLU GLU B . n A 1 28 ILE 28 28 28 ILE ILE B . n A 1 29 PRO 29 29 29 PRO PRO B . n A 1 30 LEU 30 30 30 LEU LEU B . n A 1 31 GLY 31 31 31 GLY GLY B . n A 1 32 GLY 32 32 32 GLY GLY B . n A 1 33 ASN 33 33 33 ASN ASN B . n A 1 34 VAL 34 34 34 VAL VAL B . n A 1 35 PHE 35 35 35 PHE PHE B . n A 1 36 HIS 36 36 36 HIS HIS B . n A 1 37 LYS 37 37 37 LYS LYS B . n A 1 38 GLY 38 38 38 GLY GLY B . n A 1 39 VAL 39 39 39 VAL VAL B . n A 1 40 TYR 40 40 40 TYR TYR B . n A 1 41 HIS 41 41 41 HIS HIS B . n A 1 42 ASN 42 42 42 ASN ASN B . n A 1 43 LYS 43 43 43 LYS LYS B . n A 1 44 GLU 44 44 44 GLU GLU B . n A 1 45 ILE 45 45 45 ILE ILE B . n A 1 46 ILE 46 46 46 ILE ILE B . n A 1 47 VAL 47 47 47 VAL VAL B . n A 1 48 ALA 48 48 48 ALA ALA B . n A 1 49 TYR 49 49 49 TYR TYR B . n A 1 50 SER 50 50 50 SER SER B . n A 1 51 LYS 51 51 51 LYS LYS B . n A 1 52 ILE 52 52 52 ILE ILE B . n A 1 53 GLY 53 53 53 GLY GLY B . n A 1 54 LYS 54 54 54 LYS LYS B . n A 1 55 VAL 55 55 55 VAL VAL B . n A 1 56 HIS 56 56 56 HIS HIS B . n A 1 57 SER 57 57 57 SER SER B . n A 1 58 THR 58 58 58 THR THR B . n A 1 59 LEU 59 59 59 LEU LEU B . n A 1 60 THR 60 60 60 THR THR B . n A 1 61 THR 61 61 61 THR THR B . n A 1 62 THR 62 62 62 THR THR B . n A 1 63 SER 63 63 63 SER SER B . n A 1 64 MET 64 64 64 MET MET B . n A 1 65 ILE 65 65 65 ILE ILE B . n A 1 66 LEU 66 66 66 LEU LEU B . n A 1 67 ALA 67 67 67 ALA ALA B . n A 1 68 PHE 68 68 68 PHE PHE B . n A 1 69 GLY 69 69 69 GLY GLY B . n A 1 70 VAL 70 70 70 VAL VAL B . n A 1 71 GLN 71 71 71 GLN GLN B . n A 1 72 LYS 72 72 72 LYS LYS B . n A 1 73 VAL 73 73 73 VAL VAL B . n A 1 74 LEU 74 74 74 LEU LEU B . n A 1 75 PHE 75 75 75 PHE PHE B . n A 1 76 SER 76 76 76 SER SER B . n A 1 77 GLY 77 77 77 GLY GLY B . n A 1 78 VAL 78 78 78 VAL VAL B . n A 1 79 ALA 79 79 79 ALA ALA B . n A 1 80 GLY 80 80 80 GLY GLY B . n A 1 81 SER 81 81 81 SER SER B . n A 1 82 LEU 82 82 82 LEU LEU B . n A 1 83 VAL 83 83 83 VAL VAL B . n A 1 84 LYS 84 84 84 LYS LYS B . n A 1 85 ASP 85 85 85 ASP ASP B . n A 1 86 LEU 86 86 86 LEU LEU B . n A 1 87 LYS 87 87 87 LYS LYS B . n A 1 88 ILE 88 88 88 ILE ILE B . n A 1 89 ASN 89 89 89 ASN ASN B . n A 1 90 ASP 90 90 90 ASP ASP B . n A 1 91 LEU 91 91 91 LEU LEU B . n A 1 92 LEU 92 92 92 LEU LEU B . n A 1 93 VAL 93 93 93 VAL VAL B . n A 1 94 ALA 94 94 94 ALA ALA B . n A 1 95 THR 95 95 95 THR THR B . n A 1 96 GLN 96 96 96 GLN GLN B . n A 1 97 LEU 97 97 97 LEU LEU B . n A 1 98 VAL 98 98 98 VAL VAL B . n A 1 99 GLN 99 99 99 GLN GLN B . n A 1 100 HIS 100 100 100 HIS HIS B . n A 1 101 ASP 101 101 101 ASP ASP B . n A 1 102 VAL 102 102 102 VAL VAL B . n A 1 103 ASP 103 103 103 ASP ASP B . n A 1 104 LEU 104 104 104 LEU LEU B . n A 1 105 SER 105 105 105 SER SER B . n A 1 106 ALA 106 106 106 ALA ALA B . n A 1 107 PHE 107 107 107 PHE PHE B . n A 1 108 ASP 108 108 108 ASP ASP B . n A 1 109 HIS 109 109 109 HIS HIS B . n A 1 110 PRO 110 110 110 PRO PRO B . n A 1 111 LEU 111 111 111 LEU LEU B . n A 1 112 GLY 112 112 112 GLY GLY B . n A 1 113 PHE 113 113 113 PHE PHE B . n A 1 114 ILE 114 114 114 ILE ILE B . n A 1 115 PRO 115 115 115 PRO PRO B . n A 1 116 GLU 116 116 116 GLU GLU B . n A 1 117 SER 117 117 117 SER SER B . n A 1 118 ALA 118 118 118 ALA ALA B . n A 1 119 ILE 119 119 119 ILE ILE B . n A 1 120 PHE 120 120 120 PHE PHE B . n A 1 121 ILE 121 121 121 ILE ILE B . n A 1 122 GLU 122 122 122 GLU GLU B . n A 1 123 THR 123 123 123 THR THR B . n A 1 124 SER 124 124 124 SER SER B . n A 1 125 GLY 125 125 125 GLY GLY B . n A 1 126 SER 126 126 126 SER SER B . n A 1 127 LEU 127 127 127 LEU LEU B . n A 1 128 ASN 128 128 128 ASN ASN B . n A 1 129 ALA 129 129 129 ALA ALA B . n A 1 130 LEU 130 130 130 LEU LEU B . n A 1 131 ALA 131 131 131 ALA ALA B . n A 1 132 LYS 132 132 132 LYS LYS B . n A 1 133 LYS 133 133 133 LYS LYS B . n A 1 134 ILE 134 134 134 ILE ILE B . n A 1 135 ALA 135 135 135 ALA ALA B . n A 1 136 ASN 136 136 136 ASN ASN B . n A 1 137 GLU 137 137 137 GLU GLU B . n A 1 138 GLN 138 138 138 GLN GLN B . n A 1 139 HIS 139 139 139 HIS HIS B . n A 1 140 ILE 140 140 140 ILE ILE B . n A 1 141 ALA 141 141 141 ALA ALA B . n A 1 142 LEU 142 142 142 LEU LEU B . n A 1 143 LYS 143 143 143 LYS LYS B . n A 1 144 GLU 144 144 144 GLU GLU B . n A 1 145 GLY 145 145 145 GLY GLY B . n A 1 146 VAL 146 146 146 VAL VAL B . n A 1 147 ILE 147 147 147 ILE ILE B . n A 1 148 ALA 148 148 148 ALA ALA B . n A 1 149 SER 149 149 149 SER SER B . n A 1 150 GLY 150 150 150 GLY GLY B . n A 1 151 ASP 151 151 151 ASP ASP B . n A 1 152 GLN 152 152 152 GLN GLN B . n A 1 153 PHE 153 153 153 PHE PHE B . n A 1 154 VAL 154 154 154 VAL VAL B . n A 1 155 HIS 155 155 155 HIS HIS B . n A 1 156 SER 156 156 156 SER SER B . n A 1 157 LYS 157 157 157 LYS LYS B . n A 1 158 GLU 158 158 158 GLU GLU B . n A 1 159 ARG 159 159 159 ARG ARG B . n A 1 160 LYS 160 160 160 LYS LYS B . n A 1 161 GLU 161 161 161 GLU GLU B . n A 1 162 PHE 162 162 162 PHE PHE B . n A 1 163 LEU 163 163 163 LEU LEU B . n A 1 164 VAL 164 164 164 VAL VAL B . n A 1 165 SER 165 165 165 SER SER B . n A 1 166 GLU 166 166 166 GLU GLU B . n A 1 167 PHE 167 167 167 PHE PHE B . n A 1 168 LYS 168 168 168 LYS LYS B . n A 1 169 ALA 169 169 169 ALA ALA B . n A 1 170 SER 170 170 170 SER SER B . n A 1 171 ALA 171 171 171 ALA ALA B . n A 1 172 VAL 172 172 172 VAL VAL B . n A 1 173 GLU 173 173 173 GLU GLU B . n A 1 174 MET 174 174 174 MET MET B . n A 1 175 GLU 175 175 175 GLU GLU B . n A 1 176 GLY 176 176 176 GLY GLY B . n A 1 177 ALA 177 177 177 ALA ALA B . n A 1 178 SER 178 178 178 SER SER B . n A 1 179 VAL 179 179 179 VAL VAL B . n A 1 180 ALA 180 180 180 ALA ALA B . n A 1 181 PHE 181 181 181 PHE PHE B . n A 1 182 VAL 182 182 182 VAL VAL B . n A 1 183 CYS 183 183 183 CYS CYS B . n A 1 184 GLN 184 184 184 GLN GLN B . n A 1 185 LYS 185 185 185 LYS LYS B . n A 1 186 PHE 186 186 186 PHE PHE B . n A 1 187 GLY 187 187 187 GLY GLY B . n A 1 188 VAL 188 188 188 VAL VAL B . n A 1 189 PRO 189 189 189 PRO PRO B . n A 1 190 CYS 190 190 190 CYS CYS B . n A 1 191 CYS 191 191 191 CYS CYS B . n A 1 192 VAL 192 192 192 VAL VAL B . n A 1 193 LEU 193 193 193 LEU LEU B . n A 1 194 ARG 194 194 194 ARG ARG B . n A 1 195 SER 195 195 195 SER SER B . n A 1 196 ILE 196 196 196 ILE ILE B . n A 1 197 SER 197 197 197 SER SER B . n A 1 198 ASP 198 198 198 ASP ASP B . n A 1 199 ASN 199 199 199 ASN ASN B . n A 1 200 ALA 200 200 200 ALA ALA B . n A 1 201 ASP 201 201 201 ASP ASP B . n A 1 202 GLU 202 202 202 GLU GLU B . n A 1 203 LYS 203 203 203 LYS LYS B . n A 1 204 ALA 204 204 204 ALA ALA B . n A 1 205 GLY 205 205 205 GLY GLY B . n A 1 206 MET 206 206 206 MET MET B . n A 1 207 SER 207 207 207 SER SER B . n A 1 208 PHE 208 208 208 PHE PHE B . n A 1 209 ASP 209 209 209 ASP ASP B . n A 1 210 GLU 210 210 210 GLU GLU B . n A 1 211 PHE 211 211 211 PHE PHE B . n A 1 212 LEU 212 212 212 LEU LEU B . n A 1 213 GLU 213 213 213 GLU GLU B . n A 1 214 LYS 214 214 214 LYS LYS B . n A 1 215 SER 215 215 215 SER SER B . n A 1 216 ALA 216 216 216 ALA ALA B . n A 1 217 HIS 217 217 217 HIS HIS B . n A 1 218 THR 218 218 218 THR THR B . n A 1 219 SER 219 219 219 SER SER B . n A 1 220 ALA 220 220 220 ALA ALA B . n A 1 221 LYS 221 221 221 LYS LYS B . n A 1 222 PHE 222 222 222 PHE PHE B . n A 1 223 LEU 223 223 223 LEU LEU B . n A 1 224 LYS 224 224 224 LYS LYS B . n A 1 225 SER 225 225 225 SER SER B . n A 1 226 MET 226 226 226 MET MET B . n A 1 227 VAL 227 227 227 VAL VAL B . n A 1 228 ASP 228 228 228 ASP ASP B . n A 1 229 GLU 229 229 229 GLU GLU B . n A 1 230 LEU 230 230 230 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADE 1 231 231 ADE ADE B . C 3 TRS 1 232 232 TRS TRS B . D 4 EDO 1 1001 1001 EDO EDO B . E 4 EDO 1 1002 1002 EDO EDO B . F 4 EDO 1 1003 1003 EDO EDO B . G 4 EDO 1 1004 1004 EDO EDO B . H 5 HOH 1 233 233 HOH HOH B . H 5 HOH 2 234 234 HOH HOH B . H 5 HOH 3 235 235 HOH HOH B . H 5 HOH 4 236 236 HOH HOH B . H 5 HOH 5 237 237 HOH HOH B . H 5 HOH 6 238 238 HOH HOH B . H 5 HOH 7 239 239 HOH HOH B . H 5 HOH 8 240 240 HOH HOH B . H 5 HOH 9 241 241 HOH HOH B . H 5 HOH 10 242 242 HOH HOH B . H 5 HOH 11 243 243 HOH HOH B . H 5 HOH 12 244 244 HOH HOH B . H 5 HOH 13 245 245 HOH HOH B . H 5 HOH 14 246 246 HOH HOH B . H 5 HOH 15 247 247 HOH HOH B . H 5 HOH 16 248 248 HOH HOH B . H 5 HOH 17 249 249 HOH HOH B . H 5 HOH 18 250 250 HOH HOH B . H 5 HOH 19 251 251 HOH HOH B . H 5 HOH 20 252 252 HOH HOH B . H 5 HOH 21 253 253 HOH HOH B . H 5 HOH 22 254 254 HOH HOH B . H 5 HOH 23 255 255 HOH HOH B . H 5 HOH 24 256 256 HOH HOH B . H 5 HOH 25 257 257 HOH HOH B . H 5 HOH 26 258 258 HOH HOH B . H 5 HOH 27 259 259 HOH HOH B . H 5 HOH 28 260 260 HOH HOH B . H 5 HOH 29 261 261 HOH HOH B . H 5 HOH 30 262 262 HOH HOH B . H 5 HOH 31 263 263 HOH HOH B . H 5 HOH 32 264 264 HOH HOH B . H 5 HOH 33 265 265 HOH HOH B . H 5 HOH 34 266 266 HOH HOH B . H 5 HOH 35 267 267 HOH HOH B . H 5 HOH 36 268 268 HOH HOH B . H 5 HOH 37 269 269 HOH HOH B . H 5 HOH 38 270 270 HOH HOH B . H 5 HOH 39 271 271 HOH HOH B . H 5 HOH 40 272 272 HOH HOH B . H 5 HOH 41 273 273 HOH HOH B . H 5 HOH 42 274 274 HOH HOH B . H 5 HOH 43 275 275 HOH HOH B . H 5 HOH 44 276 276 HOH HOH B . H 5 HOH 45 277 277 HOH HOH B . H 5 HOH 46 278 278 HOH HOH B . H 5 HOH 47 279 279 HOH HOH B . H 5 HOH 48 280 280 HOH HOH B . H 5 HOH 49 281 281 HOH HOH B . H 5 HOH 50 282 282 HOH HOH B . H 5 HOH 51 283 283 HOH HOH B . H 5 HOH 52 284 284 HOH HOH B . H 5 HOH 53 285 285 HOH HOH B . H 5 HOH 54 286 286 HOH HOH B . H 5 HOH 55 287 287 HOH HOH B . H 5 HOH 56 288 288 HOH HOH B . H 5 HOH 57 289 289 HOH HOH B . H 5 HOH 58 290 290 HOH HOH B . H 5 HOH 59 291 291 HOH HOH B . H 5 HOH 60 292 292 HOH HOH B . H 5 HOH 61 293 293 HOH HOH B . H 5 HOH 62 294 294 HOH HOH B . H 5 HOH 63 295 295 HOH HOH B . H 5 HOH 64 296 296 HOH HOH B . H 5 HOH 65 297 297 HOH HOH B . H 5 HOH 66 298 298 HOH HOH B . H 5 HOH 67 299 299 HOH HOH B . H 5 HOH 68 300 300 HOH HOH B . H 5 HOH 69 301 301 HOH HOH B . H 5 HOH 70 302 302 HOH HOH B . H 5 HOH 71 303 303 HOH HOH B . H 5 HOH 72 304 304 HOH HOH B . H 5 HOH 73 305 305 HOH HOH B . H 5 HOH 74 306 306 HOH HOH B . H 5 HOH 75 307 307 HOH HOH B . H 5 HOH 76 308 308 HOH HOH B . H 5 HOH 77 309 309 HOH HOH B . H 5 HOH 78 310 310 HOH HOH B . H 5 HOH 79 311 311 HOH HOH B . H 5 HOH 80 312 312 HOH HOH B . H 5 HOH 81 313 313 HOH HOH B . H 5 HOH 82 314 314 HOH HOH B . H 5 HOH 83 315 315 HOH HOH B . H 5 HOH 84 316 316 HOH HOH B . H 5 HOH 85 317 317 HOH HOH B . H 5 HOH 86 318 318 HOH HOH B . H 5 HOH 87 319 319 HOH HOH B . H 5 HOH 88 320 320 HOH HOH B . H 5 HOH 89 321 321 HOH HOH B . H 5 HOH 90 322 322 HOH HOH B . H 5 HOH 91 323 323 HOH HOH B . H 5 HOH 92 324 324 HOH HOH B . H 5 HOH 93 325 325 HOH HOH B . H 5 HOH 94 326 326 HOH HOH B . H 5 HOH 95 327 327 HOH HOH B . H 5 HOH 96 328 328 HOH HOH B . H 5 HOH 97 329 329 HOH HOH B . H 5 HOH 98 330 330 HOH HOH B . H 5 HOH 99 331 331 HOH HOH B . H 5 HOH 100 332 332 HOH HOH B . H 5 HOH 101 333 333 HOH HOH B . H 5 HOH 102 334 334 HOH HOH B . H 5 HOH 103 335 335 HOH HOH B . H 5 HOH 104 336 336 HOH HOH B . H 5 HOH 105 337 337 HOH HOH B . H 5 HOH 106 338 338 HOH HOH B . H 5 HOH 107 339 339 HOH HOH B . H 5 HOH 108 340 340 HOH HOH B . H 5 HOH 109 341 341 HOH HOH B . H 5 HOH 110 342 342 HOH HOH B . H 5 HOH 111 343 343 HOH HOH B . H 5 HOH 112 344 344 HOH HOH B . H 5 HOH 113 345 345 HOH HOH B . H 5 HOH 114 346 346 HOH HOH B . H 5 HOH 115 347 347 HOH HOH B . H 5 HOH 116 348 348 HOH HOH B . H 5 HOH 117 349 349 HOH HOH B . H 5 HOH 118 350 350 HOH HOH B . H 5 HOH 119 351 351 HOH HOH B . H 5 HOH 120 352 352 HOH HOH B . H 5 HOH 121 353 353 HOH HOH B . H 5 HOH 122 354 354 HOH HOH B . H 5 HOH 123 355 355 HOH HOH B . H 5 HOH 124 356 356 HOH HOH B . H 5 HOH 125 357 357 HOH HOH B . H 5 HOH 126 358 358 HOH HOH B . H 5 HOH 127 359 359 HOH HOH B . H 5 HOH 128 360 360 HOH HOH B . H 5 HOH 129 361 361 HOH HOH B . H 5 HOH 130 362 362 HOH HOH B . H 5 HOH 131 363 363 HOH HOH B . H 5 HOH 132 364 364 HOH HOH B . H 5 HOH 133 365 365 HOH HOH B . H 5 HOH 134 366 366 HOH HOH B . H 5 HOH 135 367 367 HOH HOH B . H 5 HOH 136 368 368 HOH HOH B . H 5 HOH 137 369 369 HOH HOH B . H 5 HOH 138 370 370 HOH HOH B . H 5 HOH 139 371 371 HOH HOH B . H 5 HOH 140 372 372 HOH HOH B . H 5 HOH 141 373 373 HOH HOH B . H 5 HOH 142 374 374 HOH HOH B . H 5 HOH 143 375 375 HOH HOH B . H 5 HOH 144 376 376 HOH HOH B . H 5 HOH 145 377 377 HOH HOH B . H 5 HOH 146 378 378 HOH HOH B . H 5 HOH 147 379 379 HOH HOH B . H 5 HOH 148 380 380 HOH HOH B . H 5 HOH 149 381 381 HOH HOH B . H 5 HOH 150 382 382 HOH HOH B . H 5 HOH 151 383 383 HOH HOH B . H 5 HOH 152 384 384 HOH HOH B . H 5 HOH 153 385 385 HOH HOH B . H 5 HOH 154 386 386 HOH HOH B . H 5 HOH 155 387 387 HOH HOH B . H 5 HOH 156 388 388 HOH HOH B . H 5 HOH 157 389 389 HOH HOH B . H 5 HOH 158 390 390 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX 'model building' . ? 1 PHENIX refinement '(phenix.refine: 1.6_289)' ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 PHENIX phasing . ? 5 # _cell.entry_id 3NM6 _cell.length_a 81.350 _cell.length_b 81.350 _cell.length_c 67.595 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NM6 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3NM6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_percent_sol 52.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '16 % w/v PEG 8000, 0.1 M Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2009-07-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator diamond _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.078 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.078 # _reflns.entry_id 3NM6 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.6 _reflns.number_obs 33924 _reflns.number_all ? _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.050 _reflns.pdbx_netI_over_sigmaI 11.5 _reflns.B_iso_Wilson_estimate 17.51 _reflns.pdbx_redundancy 11.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 3NM6 _refine.ls_number_reflns_obs 33313 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.852 _refine.ls_d_res_high 1.602 _refine.ls_percent_reflns_obs 96.95 _refine.ls_R_factor_obs 0.1429 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1414 _refine.ls_R_factor_R_free 0.1707 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.95 _refine.ls_number_reflns_R_free 1650 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 3.7712 _refine.aniso_B[2][2] 3.7712 _refine.aniso_B[3][3] -7.5423 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.400 _refine.solvent_model_param_bsol 60.111 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.17 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1751 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 158 _refine_hist.number_atoms_total 1943 _refine_hist.d_res_high 1.602 _refine_hist.d_res_low 34.852 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 1858 'X-RAY DIFFRACTION' ? f_angle_d 0.945 ? ? 2496 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.300 ? ? 678 'X-RAY DIFFRACTION' ? f_chiral_restr 0.066 ? ? 290 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 317 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.6016 1.6588 2959 0.0937 92.00 0.1644 . . 148 . . . . 'X-RAY DIFFRACTION' . 1.6588 1.7252 2970 0.0855 93.00 0.1344 . . 164 . . . . 'X-RAY DIFFRACTION' . 1.7252 1.8037 3127 0.0841 96.00 0.1417 . . 137 . . . . 'X-RAY DIFFRACTION' . 1.8037 1.8988 3125 0.0891 97.00 0.1518 . . 172 . . . . 'X-RAY DIFFRACTION' . 1.8988 2.0178 3104 0.0959 97.00 0.1521 . . 185 . . . . 'X-RAY DIFFRACTION' . 2.0178 2.1735 3220 0.1092 98.00 0.1490 . . 155 . . . . 'X-RAY DIFFRACTION' . 2.1735 2.3922 3228 0.1236 99.00 0.1556 . . 164 . . . . 'X-RAY DIFFRACTION' . 2.3922 2.7383 3214 0.1485 99.00 0.1702 . . 190 . . . . 'X-RAY DIFFRACTION' . 2.7383 3.4494 3296 0.1615 100.00 0.1876 . . 165 . . . . 'X-RAY DIFFRACTION' . 3.4494 34.8599 3420 0.1656 99.00 0.1794 . . 170 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3NM6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3NM6 _struct.title 'Helicobacter pylori MTAN complexed with adenine and tris' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NM6 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'nucleosidase, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MTNN_HELPJ _struct_ref.pdbx_db_accession Q9ZMY2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAG SLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERK EFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3NM6 _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 230 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9ZMY2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 230 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 230 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5720 ? 1 MORE 5 ? 1 'SSA (A^2)' 17500 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_557 x-y,-y,-z+7/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 157.7216666667 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 10 ? GLY A 22 ? MET B 10 GLY B 22 1 ? 13 HELX_P HELX_P2 2 GLY A 53 ? GLY A 69 ? GLY B 53 GLY B 69 1 ? 17 HELX_P HELX_P3 3 LEU A 104 ? ASP A 108 ? LEU B 104 ASP B 108 5 ? 5 HELX_P HELX_P4 4 SER A 124 ? GLN A 138 ? SER B 124 GLN B 138 1 ? 15 HELX_P HELX_P5 5 SER A 156 ? LYS A 168 ? SER B 156 LYS B 168 1 ? 13 HELX_P HELX_P6 6 GLU A 175 ? GLY A 187 ? GLU B 175 GLY B 187 1 ? 13 HELX_P HELX_P7 7 LYS A 203 ? ASP A 228 ? LYS B 203 ASP B 228 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 9 ? B ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? parallel A 7 8 ? parallel A 8 9 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 26 ? LEU A 30 ? GLU B 26 LEU B 30 A 2 ASN A 33 ? TYR A 40 ? ASN B 33 TYR B 40 A 3 LYS A 43 ? TYR A 49 ? LYS B 43 TYR B 49 A 4 LYS A 3 ? GLY A 8 ? LYS B 3 GLY B 8 A 5 LYS A 72 ? SER A 81 ? LYS B 72 SER B 81 A 6 ALA A 171 ? GLU A 173 ? ALA B 171 GLU B 173 A 7 LEU A 142 ? SER A 149 ? LEU B 142 SER B 149 A 8 LEU A 91 ? GLN A 99 ? LEU B 91 GLN B 99 A 9 PHE A 120 ? GLU A 122 ? PHE B 120 GLU B 122 B 1 GLU A 26 ? LEU A 30 ? GLU B 26 LEU B 30 B 2 ASN A 33 ? TYR A 40 ? ASN B 33 TYR B 40 B 3 LYS A 43 ? TYR A 49 ? LYS B 43 TYR B 49 B 4 LYS A 3 ? GLY A 8 ? LYS B 3 GLY B 8 B 5 LYS A 72 ? SER A 81 ? LYS B 72 SER B 81 B 6 CYS A 190 ? ASP A 198 ? CYS B 190 ASP B 198 B 7 LEU A 91 ? GLN A 99 ? LEU B 91 GLN B 99 B 8 PHE A 120 ? GLU A 122 ? PHE B 120 GLU B 122 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 28 ? N ILE B 28 O PHE A 35 ? O PHE B 35 A 2 3 N HIS A 36 ? N HIS B 36 O VAL A 47 ? O VAL B 47 A 3 4 O ILE A 46 ? O ILE B 46 N ILE A 6 ? N ILE B 6 A 4 5 N GLY A 5 ? N GLY B 5 O LYS A 72 ? O LYS B 72 A 5 6 N GLY A 80 ? N GLY B 80 O VAL A 172 ? O VAL B 172 A 6 7 O ALA A 171 ? O ALA B 171 N ALA A 148 ? N ALA B 148 A 7 8 O SER A 149 ? O SER B 149 N VAL A 98 ? N VAL B 98 A 8 9 N LEU A 97 ? N LEU B 97 O ILE A 121 ? O ILE B 121 B 1 2 N ILE A 28 ? N ILE B 28 O PHE A 35 ? O PHE B 35 B 2 3 N HIS A 36 ? N HIS B 36 O VAL A 47 ? O VAL B 47 B 3 4 O ILE A 46 ? O ILE B 46 N ILE A 6 ? N ILE B 6 B 4 5 N GLY A 5 ? N GLY B 5 O LYS A 72 ? O LYS B 72 B 5 6 N PHE A 75 ? N PHE B 75 O CYS A 191 ? O CYS B 191 B 6 7 O ARG A 194 ? O ARG B 194 N LEU A 92 ? N LEU B 92 B 7 8 N LEU A 97 ? N LEU B 97 O ILE A 121 ? O ILE B 121 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B ADE 231 ? 12 'BINDING SITE FOR RESIDUE ADE B 231' AC2 Software B TRS 232 ? 10 'BINDING SITE FOR RESIDUE TRS B 232' AC3 Software B EDO 1001 ? 6 'BINDING SITE FOR RESIDUE EDO B 1001' AC4 Software B EDO 1002 ? 5 'BINDING SITE FOR RESIDUE EDO B 1002' AC5 Software B EDO 1003 ? 2 'BINDING SITE FOR RESIDUE EDO B 1003' AC6 Software B EDO 1004 ? 2 'BINDING SITE FOR RESIDUE EDO B 1004' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 VAL A 78 ? VAL B 78 . ? 1_555 ? 2 AC1 12 ALA A 79 ? ALA B 79 . ? 1_555 ? 3 AC1 12 GLY A 80 ? GLY B 80 . ? 1_555 ? 4 AC1 12 PHE A 153 ? PHE B 153 . ? 1_555 ? 5 AC1 12 VAL A 154 ? VAL B 154 . ? 1_555 ? 6 AC1 12 VAL A 172 ? VAL B 172 . ? 1_555 ? 7 AC1 12 GLU A 173 ? GLU B 173 . ? 1_555 ? 8 AC1 12 MET A 174 ? MET B 174 . ? 1_555 ? 9 AC1 12 SER A 197 ? SER B 197 . ? 1_555 ? 10 AC1 12 ASP A 198 ? ASP B 198 . ? 1_555 ? 11 AC1 12 ALA A 200 ? ALA B 200 . ? 1_555 ? 12 AC1 12 TRS C . ? TRS B 232 . ? 1_555 ? 13 AC2 10 ALA A 9 ? ALA B 9 . ? 1_555 ? 14 AC2 10 MET A 10 ? MET B 10 . ? 1_555 ? 15 AC2 10 GLU A 13 ? GLU B 13 . ? 1_555 ? 16 AC2 10 VAL A 78 ? VAL B 78 . ? 1_555 ? 17 AC2 10 GLU A 173 ? GLU B 173 . ? 1_555 ? 18 AC2 10 MET A 174 ? MET B 174 . ? 1_555 ? 19 AC2 10 GLU A 175 ? GLU B 175 . ? 1_555 ? 20 AC2 10 ARG A 194 ? ARG B 194 . ? 1_555 ? 21 AC2 10 PHE A 208 ? PHE B 208 . ? 1_555 ? 22 AC2 10 ADE B . ? ADE B 231 . ? 1_555 ? 23 AC3 6 SER A 126 ? SER B 126 . ? 1_555 ? 24 AC3 6 LEU A 127 ? LEU B 127 . ? 1_555 ? 25 AC3 6 LEU A 130 ? LEU B 130 . ? 1_555 ? 26 AC3 6 LEU A 230 ? LEU B 230 . ? 1_555 ? 27 AC3 6 HOH H . ? HOH B 346 . ? 2_654 ? 28 AC3 6 HOH H . ? HOH B 383 . ? 2_654 ? 29 AC4 5 ASN A 33 ? ASN B 33 . ? 1_555 ? 30 AC4 5 VAL A 34 ? VAL B 34 . ? 1_555 ? 31 AC4 5 TYR A 49 ? TYR B 49 . ? 1_555 ? 32 AC4 5 HOH H . ? HOH B 260 . ? 1_555 ? 33 AC4 5 HOH H . ? HOH B 341 . ? 1_555 ? 34 AC5 2 PHE A 68 ? PHE B 68 . ? 1_555 ? 35 AC5 2 HOH H . ? HOH B 387 . ? 1_555 ? 36 AC6 2 GLU A 137 ? GLU B 137 . ? 1_555 ? 37 AC6 2 GLU A 229 ? GLU B 229 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS B 51 ? ? 82.59 161.44 2 1 ASN B 89 ? ? 84.58 -16.21 3 1 SER B 117 ? ? -137.71 -151.75 4 1 HIS B 155 ? ? -150.31 44.51 5 1 GLU B 175 ? ? -140.62 -20.60 6 1 ASP B 201 ? ? -113.35 -164.54 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 322 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id MET _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id MET _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADE N9 N Y N 1 ADE C8 C Y N 2 ADE N7 N Y N 3 ADE C5 C Y N 4 ADE C6 C Y N 5 ADE N6 N N N 6 ADE N1 N Y N 7 ADE C2 C Y N 8 ADE N3 N Y N 9 ADE C4 C Y N 10 ADE HN9 H N N 11 ADE H8 H N N 12 ADE HN61 H N N 13 ADE HN62 H N N 14 ADE H2 H N N 15 ALA N N N N 16 ALA CA C N S 17 ALA C C N N 18 ALA O O N N 19 ALA CB C N N 20 ALA OXT O N N 21 ALA H H N N 22 ALA H2 H N N 23 ALA HA H N N 24 ALA HB1 H N N 25 ALA HB2 H N N 26 ALA HB3 H N N 27 ALA HXT H N N 28 ARG N N N N 29 ARG CA C N S 30 ARG C C N N 31 ARG O O N N 32 ARG CB C N N 33 ARG CG C N N 34 ARG CD C N N 35 ARG NE N N N 36 ARG CZ C N N 37 ARG NH1 N N N 38 ARG NH2 N N N 39 ARG OXT O N N 40 ARG H H N N 41 ARG H2 H N N 42 ARG HA H N N 43 ARG HB2 H N N 44 ARG HB3 H N N 45 ARG HG2 H N N 46 ARG HG3 H N N 47 ARG HD2 H N N 48 ARG HD3 H N N 49 ARG HE H N N 50 ARG HH11 H N N 51 ARG HH12 H N N 52 ARG HH21 H N N 53 ARG HH22 H N N 54 ARG HXT H N N 55 ASN N N N N 56 ASN CA C N S 57 ASN C C N N 58 ASN O O N N 59 ASN CB C N N 60 ASN CG C N N 61 ASN OD1 O N N 62 ASN ND2 N N N 63 ASN OXT O N N 64 ASN H H N N 65 ASN H2 H N N 66 ASN HA H N N 67 ASN HB2 H N N 68 ASN HB3 H N N 69 ASN HD21 H N N 70 ASN HD22 H N N 71 ASN HXT H N N 72 ASP N N N N 73 ASP CA C N S 74 ASP C C N N 75 ASP O O N N 76 ASP CB C N N 77 ASP CG C N N 78 ASP OD1 O N N 79 ASP OD2 O N N 80 ASP OXT O N N 81 ASP H H N N 82 ASP H2 H N N 83 ASP HA H N N 84 ASP HB2 H N N 85 ASP HB3 H N N 86 ASP HD2 H N N 87 ASP HXT H N N 88 CYS N N N N 89 CYS CA C N R 90 CYS C C N N 91 CYS O O N N 92 CYS CB C N N 93 CYS SG S N N 94 CYS OXT O N N 95 CYS H H N N 96 CYS H2 H N N 97 CYS HA H N N 98 CYS HB2 H N N 99 CYS HB3 H N N 100 CYS HG H N N 101 CYS HXT H N N 102 EDO C1 C N N 103 EDO O1 O N N 104 EDO C2 C N N 105 EDO O2 O N N 106 EDO H11 H N N 107 EDO H12 H N N 108 EDO HO1 H N N 109 EDO H21 H N N 110 EDO H22 H N N 111 EDO HO2 H N N 112 GLN N N N N 113 GLN CA C N S 114 GLN C C N N 115 GLN O O N N 116 GLN CB C N N 117 GLN CG C N N 118 GLN CD C N N 119 GLN OE1 O N N 120 GLN NE2 N N N 121 GLN OXT O N N 122 GLN H H N N 123 GLN H2 H N N 124 GLN HA H N N 125 GLN HB2 H N N 126 GLN HB3 H N N 127 GLN HG2 H N N 128 GLN HG3 H N N 129 GLN HE21 H N N 130 GLN HE22 H N N 131 GLN HXT H N N 132 GLU N N N N 133 GLU CA C N S 134 GLU C C N N 135 GLU O O N N 136 GLU CB C N N 137 GLU CG C N N 138 GLU CD C N N 139 GLU OE1 O N N 140 GLU OE2 O N N 141 GLU OXT O N N 142 GLU H H N N 143 GLU H2 H N N 144 GLU HA H N N 145 GLU HB2 H N N 146 GLU HB3 H N N 147 GLU HG2 H N N 148 GLU HG3 H N N 149 GLU HE2 H N N 150 GLU HXT H N N 151 GLY N N N N 152 GLY CA C N N 153 GLY C C N N 154 GLY O O N N 155 GLY OXT O N N 156 GLY H H N N 157 GLY H2 H N N 158 GLY HA2 H N N 159 GLY HA3 H N N 160 GLY HXT H N N 161 HIS N N N N 162 HIS CA C N S 163 HIS C C N N 164 HIS O O N N 165 HIS CB C N N 166 HIS CG C Y N 167 HIS ND1 N Y N 168 HIS CD2 C Y N 169 HIS CE1 C Y N 170 HIS NE2 N Y N 171 HIS OXT O N N 172 HIS H H N N 173 HIS H2 H N N 174 HIS HA H N N 175 HIS HB2 H N N 176 HIS HB3 H N N 177 HIS HD1 H N N 178 HIS HD2 H N N 179 HIS HE1 H N N 180 HIS HE2 H N N 181 HIS HXT H N N 182 HOH O O N N 183 HOH H1 H N N 184 HOH H2 H N N 185 ILE N N N N 186 ILE CA C N S 187 ILE C C N N 188 ILE O O N N 189 ILE CB C N S 190 ILE CG1 C N N 191 ILE CG2 C N N 192 ILE CD1 C N N 193 ILE OXT O N N 194 ILE H H N N 195 ILE H2 H N N 196 ILE HA H N N 197 ILE HB H N N 198 ILE HG12 H N N 199 ILE HG13 H N N 200 ILE HG21 H N N 201 ILE HG22 H N N 202 ILE HG23 H N N 203 ILE HD11 H N N 204 ILE HD12 H N N 205 ILE HD13 H N N 206 ILE HXT H N N 207 LEU N N N N 208 LEU CA C N S 209 LEU C C N N 210 LEU O O N N 211 LEU CB C N N 212 LEU CG C N N 213 LEU CD1 C N N 214 LEU CD2 C N N 215 LEU OXT O N N 216 LEU H H N N 217 LEU H2 H N N 218 LEU HA H N N 219 LEU HB2 H N N 220 LEU HB3 H N N 221 LEU HG H N N 222 LEU HD11 H N N 223 LEU HD12 H N N 224 LEU HD13 H N N 225 LEU HD21 H N N 226 LEU HD22 H N N 227 LEU HD23 H N N 228 LEU HXT H N N 229 LYS N N N N 230 LYS CA C N S 231 LYS C C N N 232 LYS O O N N 233 LYS CB C N N 234 LYS CG C N N 235 LYS CD C N N 236 LYS CE C N N 237 LYS NZ N N N 238 LYS OXT O N N 239 LYS H H N N 240 LYS H2 H N N 241 LYS HA H N N 242 LYS HB2 H N N 243 LYS HB3 H N N 244 LYS HG2 H N N 245 LYS HG3 H N N 246 LYS HD2 H N N 247 LYS HD3 H N N 248 LYS HE2 H N N 249 LYS HE3 H N N 250 LYS HZ1 H N N 251 LYS HZ2 H N N 252 LYS HZ3 H N N 253 LYS HXT H N N 254 MET N N N N 255 MET CA C N S 256 MET C C N N 257 MET O O N N 258 MET CB C N N 259 MET CG C N N 260 MET SD S N N 261 MET CE C N N 262 MET OXT O N N 263 MET H H N N 264 MET H2 H N N 265 MET HA H N N 266 MET HB2 H N N 267 MET HB3 H N N 268 MET HG2 H N N 269 MET HG3 H N N 270 MET HE1 H N N 271 MET HE2 H N N 272 MET HE3 H N N 273 MET HXT H N N 274 PHE N N N N 275 PHE CA C N S 276 PHE C C N N 277 PHE O O N N 278 PHE CB C N N 279 PHE CG C Y N 280 PHE CD1 C Y N 281 PHE CD2 C Y N 282 PHE CE1 C Y N 283 PHE CE2 C Y N 284 PHE CZ C Y N 285 PHE OXT O N N 286 PHE H H N N 287 PHE H2 H N N 288 PHE HA H N N 289 PHE HB2 H N N 290 PHE HB3 H N N 291 PHE HD1 H N N 292 PHE HD2 H N N 293 PHE HE1 H N N 294 PHE HE2 H N N 295 PHE HZ H N N 296 PHE HXT H N N 297 PRO N N N N 298 PRO CA C N S 299 PRO C C N N 300 PRO O O N N 301 PRO CB C N N 302 PRO CG C N N 303 PRO CD C N N 304 PRO OXT O N N 305 PRO H H N N 306 PRO HA H N N 307 PRO HB2 H N N 308 PRO HB3 H N N 309 PRO HG2 H N N 310 PRO HG3 H N N 311 PRO HD2 H N N 312 PRO HD3 H N N 313 PRO HXT H N N 314 SER N N N N 315 SER CA C N S 316 SER C C N N 317 SER O O N N 318 SER CB C N N 319 SER OG O N N 320 SER OXT O N N 321 SER H H N N 322 SER H2 H N N 323 SER HA H N N 324 SER HB2 H N N 325 SER HB3 H N N 326 SER HG H N N 327 SER HXT H N N 328 THR N N N N 329 THR CA C N S 330 THR C C N N 331 THR O O N N 332 THR CB C N R 333 THR OG1 O N N 334 THR CG2 C N N 335 THR OXT O N N 336 THR H H N N 337 THR H2 H N N 338 THR HA H N N 339 THR HB H N N 340 THR HG1 H N N 341 THR HG21 H N N 342 THR HG22 H N N 343 THR HG23 H N N 344 THR HXT H N N 345 TRS C C N N 346 TRS C1 C N N 347 TRS C2 C N N 348 TRS C3 C N N 349 TRS N N N N 350 TRS O1 O N N 351 TRS O2 O N N 352 TRS O3 O N N 353 TRS H11 H N N 354 TRS H12 H N N 355 TRS H21 H N N 356 TRS H22 H N N 357 TRS H31 H N N 358 TRS H32 H N N 359 TRS HN1 H N N 360 TRS HN2 H N N 361 TRS HN3 H N N 362 TRS HO1 H N N 363 TRS HO2 H N N 364 TRS HO3 H N N 365 TYR N N N N 366 TYR CA C N S 367 TYR C C N N 368 TYR O O N N 369 TYR CB C N N 370 TYR CG C Y N 371 TYR CD1 C Y N 372 TYR CD2 C Y N 373 TYR CE1 C Y N 374 TYR CE2 C Y N 375 TYR CZ C Y N 376 TYR OH O N N 377 TYR OXT O N N 378 TYR H H N N 379 TYR H2 H N N 380 TYR HA H N N 381 TYR HB2 H N N 382 TYR HB3 H N N 383 TYR HD1 H N N 384 TYR HD2 H N N 385 TYR HE1 H N N 386 TYR HE2 H N N 387 TYR HH H N N 388 TYR HXT H N N 389 VAL N N N N 390 VAL CA C N S 391 VAL C C N N 392 VAL O O N N 393 VAL CB C N N 394 VAL CG1 C N N 395 VAL CG2 C N N 396 VAL OXT O N N 397 VAL H H N N 398 VAL H2 H N N 399 VAL HA H N N 400 VAL HB H N N 401 VAL HG11 H N N 402 VAL HG12 H N N 403 VAL HG13 H N N 404 VAL HG21 H N N 405 VAL HG22 H N N 406 VAL HG23 H N N 407 VAL HXT H N N 408 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADE N9 C8 sing Y N 1 ADE N9 C4 sing Y N 2 ADE N9 HN9 sing N N 3 ADE C8 N7 doub Y N 4 ADE C8 H8 sing N N 5 ADE N7 C5 sing Y N 6 ADE C5 C6 sing Y N 7 ADE C5 C4 doub Y N 8 ADE C6 N6 sing N N 9 ADE C6 N1 doub Y N 10 ADE N6 HN61 sing N N 11 ADE N6 HN62 sing N N 12 ADE N1 C2 sing Y N 13 ADE C2 N3 doub Y N 14 ADE C2 H2 sing N N 15 ADE N3 C4 sing Y N 16 ALA N CA sing N N 17 ALA N H sing N N 18 ALA N H2 sing N N 19 ALA CA C sing N N 20 ALA CA CB sing N N 21 ALA CA HA sing N N 22 ALA C O doub N N 23 ALA C OXT sing N N 24 ALA CB HB1 sing N N 25 ALA CB HB2 sing N N 26 ALA CB HB3 sing N N 27 ALA OXT HXT sing N N 28 ARG N CA sing N N 29 ARG N H sing N N 30 ARG N H2 sing N N 31 ARG CA C sing N N 32 ARG CA CB sing N N 33 ARG CA HA sing N N 34 ARG C O doub N N 35 ARG C OXT sing N N 36 ARG CB CG sing N N 37 ARG CB HB2 sing N N 38 ARG CB HB3 sing N N 39 ARG CG CD sing N N 40 ARG CG HG2 sing N N 41 ARG CG HG3 sing N N 42 ARG CD NE sing N N 43 ARG CD HD2 sing N N 44 ARG CD HD3 sing N N 45 ARG NE CZ sing N N 46 ARG NE HE sing N N 47 ARG CZ NH1 sing N N 48 ARG CZ NH2 doub N N 49 ARG NH1 HH11 sing N N 50 ARG NH1 HH12 sing N N 51 ARG NH2 HH21 sing N N 52 ARG NH2 HH22 sing N N 53 ARG OXT HXT sing N N 54 ASN N CA sing N N 55 ASN N H sing N N 56 ASN N H2 sing N N 57 ASN CA C sing N N 58 ASN CA CB sing N N 59 ASN CA HA sing N N 60 ASN C O doub N N 61 ASN C OXT sing N N 62 ASN CB CG sing N N 63 ASN CB HB2 sing N N 64 ASN CB HB3 sing N N 65 ASN CG OD1 doub N N 66 ASN CG ND2 sing N N 67 ASN ND2 HD21 sing N N 68 ASN ND2 HD22 sing N N 69 ASN OXT HXT sing N N 70 ASP N CA sing N N 71 ASP N H sing N N 72 ASP N H2 sing N N 73 ASP CA C sing N N 74 ASP CA CB sing N N 75 ASP CA HA sing N N 76 ASP C O doub N N 77 ASP C OXT sing N N 78 ASP CB CG sing N N 79 ASP CB HB2 sing N N 80 ASP CB HB3 sing N N 81 ASP CG OD1 doub N N 82 ASP CG OD2 sing N N 83 ASP OD2 HD2 sing N N 84 ASP OXT HXT sing N N 85 CYS N CA sing N N 86 CYS N H sing N N 87 CYS N H2 sing N N 88 CYS CA C sing N N 89 CYS CA CB sing N N 90 CYS CA HA sing N N 91 CYS C O doub N N 92 CYS C OXT sing N N 93 CYS CB SG sing N N 94 CYS CB HB2 sing N N 95 CYS CB HB3 sing N N 96 CYS SG HG sing N N 97 CYS OXT HXT sing N N 98 EDO C1 O1 sing N N 99 EDO C1 C2 sing N N 100 EDO C1 H11 sing N N 101 EDO C1 H12 sing N N 102 EDO O1 HO1 sing N N 103 EDO C2 O2 sing N N 104 EDO C2 H21 sing N N 105 EDO C2 H22 sing N N 106 EDO O2 HO2 sing N N 107 GLN N CA sing N N 108 GLN N H sing N N 109 GLN N H2 sing N N 110 GLN CA C sing N N 111 GLN CA CB sing N N 112 GLN CA HA sing N N 113 GLN C O doub N N 114 GLN C OXT sing N N 115 GLN CB CG sing N N 116 GLN CB HB2 sing N N 117 GLN CB HB3 sing N N 118 GLN CG CD sing N N 119 GLN CG HG2 sing N N 120 GLN CG HG3 sing N N 121 GLN CD OE1 doub N N 122 GLN CD NE2 sing N N 123 GLN NE2 HE21 sing N N 124 GLN NE2 HE22 sing N N 125 GLN OXT HXT sing N N 126 GLU N CA sing N N 127 GLU N H sing N N 128 GLU N H2 sing N N 129 GLU CA C sing N N 130 GLU CA CB sing N N 131 GLU CA HA sing N N 132 GLU C O doub N N 133 GLU C OXT sing N N 134 GLU CB CG sing N N 135 GLU CB HB2 sing N N 136 GLU CB HB3 sing N N 137 GLU CG CD sing N N 138 GLU CG HG2 sing N N 139 GLU CG HG3 sing N N 140 GLU CD OE1 doub N N 141 GLU CD OE2 sing N N 142 GLU OE2 HE2 sing N N 143 GLU OXT HXT sing N N 144 GLY N CA sing N N 145 GLY N H sing N N 146 GLY N H2 sing N N 147 GLY CA C sing N N 148 GLY CA HA2 sing N N 149 GLY CA HA3 sing N N 150 GLY C O doub N N 151 GLY C OXT sing N N 152 GLY OXT HXT sing N N 153 HIS N CA sing N N 154 HIS N H sing N N 155 HIS N H2 sing N N 156 HIS CA C sing N N 157 HIS CA CB sing N N 158 HIS CA HA sing N N 159 HIS C O doub N N 160 HIS C OXT sing N N 161 HIS CB CG sing N N 162 HIS CB HB2 sing N N 163 HIS CB HB3 sing N N 164 HIS CG ND1 sing Y N 165 HIS CG CD2 doub Y N 166 HIS ND1 CE1 doub Y N 167 HIS ND1 HD1 sing N N 168 HIS CD2 NE2 sing Y N 169 HIS CD2 HD2 sing N N 170 HIS CE1 NE2 sing Y N 171 HIS CE1 HE1 sing N N 172 HIS NE2 HE2 sing N N 173 HIS OXT HXT sing N N 174 HOH O H1 sing N N 175 HOH O H2 sing N N 176 ILE N CA sing N N 177 ILE N H sing N N 178 ILE N H2 sing N N 179 ILE CA C sing N N 180 ILE CA CB sing N N 181 ILE CA HA sing N N 182 ILE C O doub N N 183 ILE C OXT sing N N 184 ILE CB CG1 sing N N 185 ILE CB CG2 sing N N 186 ILE CB HB sing N N 187 ILE CG1 CD1 sing N N 188 ILE CG1 HG12 sing N N 189 ILE CG1 HG13 sing N N 190 ILE CG2 HG21 sing N N 191 ILE CG2 HG22 sing N N 192 ILE CG2 HG23 sing N N 193 ILE CD1 HD11 sing N N 194 ILE CD1 HD12 sing N N 195 ILE CD1 HD13 sing N N 196 ILE OXT HXT sing N N 197 LEU N CA sing N N 198 LEU N H sing N N 199 LEU N H2 sing N N 200 LEU CA C sing N N 201 LEU CA CB sing N N 202 LEU CA HA sing N N 203 LEU C O doub N N 204 LEU C OXT sing N N 205 LEU CB CG sing N N 206 LEU CB HB2 sing N N 207 LEU CB HB3 sing N N 208 LEU CG CD1 sing N N 209 LEU CG CD2 sing N N 210 LEU CG HG sing N N 211 LEU CD1 HD11 sing N N 212 LEU CD1 HD12 sing N N 213 LEU CD1 HD13 sing N N 214 LEU CD2 HD21 sing N N 215 LEU CD2 HD22 sing N N 216 LEU CD2 HD23 sing N N 217 LEU OXT HXT sing N N 218 LYS N CA sing N N 219 LYS N H sing N N 220 LYS N H2 sing N N 221 LYS CA C sing N N 222 LYS CA CB sing N N 223 LYS CA HA sing N N 224 LYS C O doub N N 225 LYS C OXT sing N N 226 LYS CB CG sing N N 227 LYS CB HB2 sing N N 228 LYS CB HB3 sing N N 229 LYS CG CD sing N N 230 LYS CG HG2 sing N N 231 LYS CG HG3 sing N N 232 LYS CD CE sing N N 233 LYS CD HD2 sing N N 234 LYS CD HD3 sing N N 235 LYS CE NZ sing N N 236 LYS CE HE2 sing N N 237 LYS CE HE3 sing N N 238 LYS NZ HZ1 sing N N 239 LYS NZ HZ2 sing N N 240 LYS NZ HZ3 sing N N 241 LYS OXT HXT sing N N 242 MET N CA sing N N 243 MET N H sing N N 244 MET N H2 sing N N 245 MET CA C sing N N 246 MET CA CB sing N N 247 MET CA HA sing N N 248 MET C O doub N N 249 MET C OXT sing N N 250 MET CB CG sing N N 251 MET CB HB2 sing N N 252 MET CB HB3 sing N N 253 MET CG SD sing N N 254 MET CG HG2 sing N N 255 MET CG HG3 sing N N 256 MET SD CE sing N N 257 MET CE HE1 sing N N 258 MET CE HE2 sing N N 259 MET CE HE3 sing N N 260 MET OXT HXT sing N N 261 PHE N CA sing N N 262 PHE N H sing N N 263 PHE N H2 sing N N 264 PHE CA C sing N N 265 PHE CA CB sing N N 266 PHE CA HA sing N N 267 PHE C O doub N N 268 PHE C OXT sing N N 269 PHE CB CG sing N N 270 PHE CB HB2 sing N N 271 PHE CB HB3 sing N N 272 PHE CG CD1 doub Y N 273 PHE CG CD2 sing Y N 274 PHE CD1 CE1 sing Y N 275 PHE CD1 HD1 sing N N 276 PHE CD2 CE2 doub Y N 277 PHE CD2 HD2 sing N N 278 PHE CE1 CZ doub Y N 279 PHE CE1 HE1 sing N N 280 PHE CE2 CZ sing Y N 281 PHE CE2 HE2 sing N N 282 PHE CZ HZ sing N N 283 PHE OXT HXT sing N N 284 PRO N CA sing N N 285 PRO N CD sing N N 286 PRO N H sing N N 287 PRO CA C sing N N 288 PRO CA CB sing N N 289 PRO CA HA sing N N 290 PRO C O doub N N 291 PRO C OXT sing N N 292 PRO CB CG sing N N 293 PRO CB HB2 sing N N 294 PRO CB HB3 sing N N 295 PRO CG CD sing N N 296 PRO CG HG2 sing N N 297 PRO CG HG3 sing N N 298 PRO CD HD2 sing N N 299 PRO CD HD3 sing N N 300 PRO OXT HXT sing N N 301 SER N CA sing N N 302 SER N H sing N N 303 SER N H2 sing N N 304 SER CA C sing N N 305 SER CA CB sing N N 306 SER CA HA sing N N 307 SER C O doub N N 308 SER C OXT sing N N 309 SER CB OG sing N N 310 SER CB HB2 sing N N 311 SER CB HB3 sing N N 312 SER OG HG sing N N 313 SER OXT HXT sing N N 314 THR N CA sing N N 315 THR N H sing N N 316 THR N H2 sing N N 317 THR CA C sing N N 318 THR CA CB sing N N 319 THR CA HA sing N N 320 THR C O doub N N 321 THR C OXT sing N N 322 THR CB OG1 sing N N 323 THR CB CG2 sing N N 324 THR CB HB sing N N 325 THR OG1 HG1 sing N N 326 THR CG2 HG21 sing N N 327 THR CG2 HG22 sing N N 328 THR CG2 HG23 sing N N 329 THR OXT HXT sing N N 330 TRS C C1 sing N N 331 TRS C C2 sing N N 332 TRS C C3 sing N N 333 TRS C N sing N N 334 TRS C1 O1 sing N N 335 TRS C1 H11 sing N N 336 TRS C1 H12 sing N N 337 TRS C2 O2 sing N N 338 TRS C2 H21 sing N N 339 TRS C2 H22 sing N N 340 TRS C3 O3 sing N N 341 TRS C3 H31 sing N N 342 TRS C3 H32 sing N N 343 TRS N HN1 sing N N 344 TRS N HN2 sing N N 345 TRS N HN3 sing N N 346 TRS O1 HO1 sing N N 347 TRS O2 HO2 sing N N 348 TRS O3 HO3 sing N N 349 TYR N CA sing N N 350 TYR N H sing N N 351 TYR N H2 sing N N 352 TYR CA C sing N N 353 TYR CA CB sing N N 354 TYR CA HA sing N N 355 TYR C O doub N N 356 TYR C OXT sing N N 357 TYR CB CG sing N N 358 TYR CB HB2 sing N N 359 TYR CB HB3 sing N N 360 TYR CG CD1 doub Y N 361 TYR CG CD2 sing Y N 362 TYR CD1 CE1 sing Y N 363 TYR CD1 HD1 sing N N 364 TYR CD2 CE2 doub Y N 365 TYR CD2 HD2 sing N N 366 TYR CE1 CZ doub Y N 367 TYR CE1 HE1 sing N N 368 TYR CE2 CZ sing Y N 369 TYR CE2 HE2 sing N N 370 TYR CZ OH sing N N 371 TYR OH HH sing N N 372 TYR OXT HXT sing N N 373 VAL N CA sing N N 374 VAL N H sing N N 375 VAL N H2 sing N N 376 VAL CA C sing N N 377 VAL CA CB sing N N 378 VAL CA HA sing N N 379 VAL C O doub N N 380 VAL C OXT sing N N 381 VAL CB CG1 sing N N 382 VAL CB CG2 sing N N 383 VAL CB HB sing N N 384 VAL CG1 HG11 sing N N 385 VAL CG1 HG12 sing N N 386 VAL CG1 HG13 sing N N 387 VAL CG2 HG21 sing N N 388 VAL CG2 HG22 sing N N 389 VAL CG2 HG23 sing N N 390 VAL OXT HXT sing N N 391 # _atom_sites.entry_id 3NM6 _atom_sites.fract_transf_matrix[1][1] 0.012293 _atom_sites.fract_transf_matrix[1][2] 0.007097 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014194 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014794 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_