HEADER HYDROLASE 22-JUN-10 3NMB TITLE CRYSTAL STRUCTURE OF A PUTATIVE SUGAR HYDROLASE (BACOVA_03189) FROM TITLE 2 BACTEROIDES OVATUS AT 2.40 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SUGAR HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483; SOURCE 5 GENE: BACOVA_03189; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 16-OCT-24 3NMB 1 REMARK REVDAT 2 01-FEB-23 3NMB 1 REMARK SEQADV LINK REVDAT 1 18-AUG-10 3NMB 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE SUGAR HYDROLASE JRNL TITL 2 (BACOVA_03189) FROM BACTEROIDES OVATUS AT 2.40 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 18936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 965 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1270 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.169 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2152 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1507 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2881 ; 1.549 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3668 ; 0.871 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 259 ; 7.561 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;36.938 ;25.926 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 355 ;14.505 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;16.455 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 290 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2379 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 410 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1272 ; 0.664 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 530 ; 0.152 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2038 ; 1.237 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 880 ; 2.062 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 841 ; 3.258 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 288 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9520 41.6730 36.9280 REMARK 3 T TENSOR REMARK 3 T11: 0.0065 T22: 0.0021 REMARK 3 T33: 0.0062 T12: 0.0028 REMARK 3 T13: 0.0039 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.3460 L22: 1.4861 REMARK 3 L33: 1.3163 L12: -0.1946 REMARK 3 L13: 0.2252 L23: -0.4898 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: 0.0236 S13: 0.0541 REMARK 3 S21: -0.0007 S22: 0.0004 S23: -0.0604 REMARK 3 S31: -0.0429 S32: 0.0063 S33: -0.0109 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 7. POLYETHYLENE GLYCOL-3350 (PEG) FRAGMENTS AND REMARK 3 ETHYLENE GLYCOL (EDO) FROM THE CRYSTALLIZATION/CRYOPROTECTION REMARK 3 SOLUTION AND A SODIUM ION (NA) FROM THE PROTEIN BUFFER ARE REMARK 3 MODELED. REMARK 4 REMARK 4 3NMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000060006. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97931,0.97868 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18955 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 28.825 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.19500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.97900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STATISTICS REPORTED IN REMARK 200 WERE COMPUTED WITH REMARK 200 XSCALE WITH FRIEDEL PAIRS KEPT SEPARATE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.200M NA2HPO4, 20.00% PEG-3350, NO REMARK 280 BUFFER, PH 9.1, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.36100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.94000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.94000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.04150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.94000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.94000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.68050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.94000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.94000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.04150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.94000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.94000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.68050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.36100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 365 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 423 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLN A 30 REMARK 465 GLU A 31 REMARK 465 GLU A 32 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 45 10.80 53.23 REMARK 500 ALA A 113 47.58 -78.38 REMARK 500 LYS A 117 -77.15 -121.67 REMARK 500 SER A 133 -156.65 -150.61 REMARK 500 ALA A 185 -3.67 74.50 REMARK 500 TRP A 249 73.47 -156.01 REMARK 500 ASN A 258 55.91 -112.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 1 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 132 OD1 REMARK 620 2 SER A 133 O 81.2 REMARK 620 3 GLU A 162 OE2 167.5 111.1 REMARK 620 4 GLN A 164 OE1 87.6 84.3 91.2 REMARK 620 5 GLN A 271 OE1 99.5 82.4 84.9 163.8 REMARK 620 6 HOH A 307 O 92.1 168.4 75.4 86.0 108.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 17 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 416742 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 30-288) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3NMB A 30 288 UNP A7LZB4 A7LZB4_BACOV 30 288 SEQADV 3NMB GLY A 0 UNP A7LZB4 EXPRESSION TAG SEQRES 1 A 260 GLY GLN GLU GLU PRO SER LYS VAL ALA LEU SER TYR SER SEQRES 2 A 260 LYS SER LEU LYS ALA PRO GLU THR ASP SER LEU ASN LEU SEQRES 3 A 260 PRO VAL ASP GLU ASN GLY TYR ILE THR ILE PHE ASP GLY SEQRES 4 A 260 GLU THR PHE ASN GLY TRP ARG GLY TYR GLY LYS ASP ARG SEQRES 5 A 260 VAL PRO THR LYS TRP THR ILE GLU ASP GLY CYS ILE LYS SEQRES 6 A 260 PHE ASN GLY SER GLY GLY GLY GLU ALA GLN ASP GLY ASP SEQRES 7 A 260 GLY GLY ASP LEU ILE PHE ALA HIS LYS PHE LYS ASN PHE SEQRES 8 A 260 GLU LEU GLU LEU GLU TRP LYS VAL ALA LYS GLY SER ASN SEQRES 9 A 260 SER GLY ILE LEU TYR LEU ALA GLN GLU VAL THR SER LYS SEQRES 10 A 260 ASP LYS ASP GLY ASN ASP VAL LEU GLU PRO ILE TYR ILE SEQRES 11 A 260 SER ALA PRO GLU TYR GLN ILE LEU ASP ASN ALA ASN HIS SEQRES 12 A 260 PRO ASP ALA LYS LEU GLY LYS ASP ASN ASN ARG GLN SER SEQRES 13 A 260 ALA SER LEU TYR ASP MSE ILE PRO ALA VAL PRO GLN ASN SEQRES 14 A 260 SER LYS PRO PHE GLY GLU TRP ASN LYS ALA LYS ILE MSE SEQRES 15 A 260 VAL TYR LYS GLY THR VAL VAL HIS GLY GLN ASN ASP GLU SEQRES 16 A 260 ASN VAL LEU GLU TYR HIS LEU TRP THR LYS GLN TRP THR SEQRES 17 A 260 ASP MSE LEU GLN ALA SER LYS PHE SER GLU ASP LYS TRP SEQRES 18 A 260 PRO LEU ALA PHE GLU LEU LEU ASN ASN CYS GLY GLY GLU SEQRES 19 A 260 ASN HIS GLU GLY PHE ILE GLY LEU GLN ASP HIS GLY ASP SEQRES 20 A 260 ASP VAL TRP PHE ARG ASN ILE ARG VAL LYS VAL LEU ASP MODRES 3NMB MSE A 190 MET SELENOMETHIONINE MODRES 3NMB MSE A 210 MET SELENOMETHIONINE MODRES 3NMB MSE A 238 MET SELENOMETHIONINE HET MSE A 190 8 HET MSE A 210 8 HET MSE A 238 8 HET NA A 1 1 HET PEG A 2 7 HET PEG A 3 7 HET EDO A 4 4 HET EDO A 5 4 HET EDO A 6 4 HET EDO A 7 4 HET EDO A 8 4 HET EDO A 9 4 HET EDO A 10 4 HET EDO A 11 4 HET EDO A 12 4 HET EDO A 13 4 HET EDO A 14 4 HET EDO A 15 4 HET EDO A 16 4 HET EDO A 17 4 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 NA NA 1+ FORMUL 3 PEG 2(C4 H10 O3) FORMUL 5 EDO 14(C2 H6 O2) FORMUL 19 HOH *191(H2 O) HELIX 1 1 GLY A 99 GLN A 103 5 5 HELIX 2 2 PRO A 155 SER A 159 5 5 HELIX 3 3 HIS A 171 LEU A 176 5 6 HELIX 4 4 THR A 232 ALA A 241 1 10 HELIX 5 5 TRP A 249 ASN A 258 1 10 SHEET 1 A 2 LYS A 35 TYR A 40 0 SHEET 2 A 2 ASP A 50 PRO A 55 -1 O LEU A 52 N LEU A 38 SHEET 1 B 4 TYR A 61 THR A 63 0 SHEET 2 B 4 VAL A 277 VAL A 286 -1 O VAL A 284 N ILE A 62 SHEET 3 B 4 CYS A 91 PHE A 94 -1 N PHE A 94 O VAL A 277 SHEET 4 B 4 TRP A 85 GLU A 88 -1 N THR A 86 O LYS A 93 SHEET 1 C 6 TYR A 61 THR A 63 0 SHEET 2 C 6 VAL A 277 VAL A 286 -1 O VAL A 284 N ILE A 62 SHEET 3 C 6 PHE A 119 VAL A 127 -1 N LYS A 126 O TRP A 278 SHEET 4 C 6 ASN A 205 TYR A 212 -1 O ALA A 207 N LEU A 123 SHEET 5 C 6 THR A 215 GLN A 220 -1 O GLY A 219 N LYS A 208 SHEET 6 C 6 GLU A 223 HIS A 229 -1 O TYR A 228 N VAL A 216 SHEET 1 D 5 TRP A 73 GLY A 75 0 SHEET 2 D 5 LEU A 110 PHE A 116 -1 O ILE A 111 N ARG A 74 SHEET 3 D 5 GLY A 266 LEU A 270 -1 O LEU A 270 N LEU A 110 SHEET 4 D 5 ASN A 132 ALA A 139 -1 N LEU A 136 O GLY A 269 SHEET 5 D 5 GLU A 162 LEU A 166 -1 O TYR A 163 N ILE A 135 SHEET 1 E 2 THR A 143 LYS A 145 0 SHEET 2 E 2 ASP A 151 LEU A 153 -1 O VAL A 152 N SER A 144 LINK C ASP A 189 N MSE A 190 1555 1555 1.34 LINK C MSE A 190 N ILE A 191 1555 1555 1.33 LINK C ILE A 209 N MSE A 210 1555 1555 1.33 LINK C MSE A 210 N VAL A 211 1555 1555 1.34 LINK C ASP A 237 N MSE A 238 1555 1555 1.32 LINK C MSE A 238 N LEU A 239 1555 1555 1.33 LINK NA NA A 1 OD1 ASN A 132 1555 1555 2.46 LINK NA NA A 1 O SER A 133 1555 1555 2.20 LINK NA NA A 1 OE2 GLU A 162 1555 1555 2.54 LINK NA NA A 1 OE1 GLN A 164 1555 1555 2.43 LINK NA NA A 1 OE1 GLN A 271 1555 1555 2.30 LINK NA NA A 1 O HOH A 307 1555 1555 2.36 CISPEP 1 VAL A 194 PRO A 195 0 1.84 SITE 1 AC1 6 ASN A 132 SER A 133 GLU A 162 GLN A 164 SITE 2 AC1 6 GLN A 271 HOH A 307 SITE 1 AC2 9 LYS A 206 LYS A 208 GLY A 219 GLN A 220 SITE 2 AC2 9 ASN A 221 ASP A 222 GLU A 223 ASN A 224 SITE 3 AC2 9 HOH A 444 SITE 1 AC3 3 LYS A 126 TRP A 204 ARG A 280 SITE 1 AC4 5 SER A 97 ASP A 104 TRP A 231 HIS A 264 SITE 2 AC4 5 HOH A 447 SITE 1 AC5 7 GLU A 101 ALA A 102 TRP A 231 THR A 232 SITE 2 AC5 7 LYS A 233 GLN A 234 HOH A 442 SITE 1 AC6 4 THR A 69 ASN A 71 ASP A 79 ARG A 80 SITE 1 AC7 4 PRO A 55 THR A 63 ASP A 66 HOH A 431 SITE 1 AC8 2 GLU A 227 HOH A 342 SITE 1 AC9 3 HIS A 114 PHE A 116 VAL A 286 SITE 1 BC1 7 GLY A 96 GLY A 98 SER A 131 GLY A 274 SITE 2 BC1 7 ASP A 275 ASP A 276 HOH A 397 SITE 1 BC2 5 GLU A 101 TYR A 157 THR A 232 GLN A 234 SITE 2 BC2 5 LYS A 243 SITE 1 BC3 5 EDO A 14 GLU A 120 LYS A 208 MSE A 210 SITE 2 BC3 5 ASN A 224 SITE 1 BC4 7 TYR A 157 GLU A 162 TYR A 188 LYS A 243 SITE 2 BC4 7 GLN A 271 HOH A 307 HOH A 328 SITE 1 BC5 4 EDO A 12 GLU A 120 LYS A 175 LYS A 285 SITE 1 BC6 3 LYS A 45 HOH A 383 HOH A 461 SITE 1 BC7 1 GLN A 234 SITE 1 BC8 3 LYS A 45 THR A 143 ASP A 151 CRYST1 99.880 99.880 94.722 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010012 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010557 0.00000