HEADER ISOMERASE REGULATOR 24-JUN-10 3NO8 TITLE CRYSTAL STRUCTURE OF THE PHR DOMAIN FROM HUMAN BTBD2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BTB/POZ DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PHR DOMAIN RESIDUES 361-525; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BTBD, BTBD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC); MODIFIED PET26B KEYWDS PHR DOMAIN, BTBD1, BTBD2, PAM-HIGHWIRE-RPM-1 DOMAIN, TOPOSISOMERASE KEYWDS 2 REGULATION, PROTEIN STRUCTURE INITIATIVE, NEW YORK STRUCTURAL KEYWDS 3 GENOMIX RESEARCH CONSORTIUM, NYSGXRC, STRUCTURAL GENOMICS, PSI-2, KEYWDS 4 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, TRANSCRIPTION, KEYWDS 5 ISOMERASE REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,S.MILLER,M.RUTTER,K.BAIN,T.GHEYI,S.ATWELL, AUTHOR 2 D.A.THOMPSON,J.S.EMTAGE,S.WASSERMAN,J.M.SAUDER,S.K.BURLEY,NEW YORK AUTHOR 3 SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 4 06-SEP-23 3NO8 1 REMARK REVDAT 3 10-FEB-21 3NO8 1 AUTHOR REMARK SEQADV REVDAT 2 21-NOV-18 3NO8 1 AUTHOR REVDAT 1 25-AUG-10 3NO8 0 JRNL AUTH P.SAMPATHKUMAR JRNL TITL CRYSTAL STRUCTURE OF THE PHR DOMAIN FROM HUMAN BTBD2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 850 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1134 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2369 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.292 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.227 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.062 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2449 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1573 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3328 ; 1.622 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3820 ; 0.888 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 7.684 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;36.243 ;24.159 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 342 ;13.114 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.599 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2803 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 526 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1548 ; 0.869 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 646 ; 0.206 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2495 ; 1.606 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 901 ; 2.574 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 833 ; 4.072 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3NO8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000060074. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16797 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 42.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 26.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15200 REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 27.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.57000 REMARK 200 FOR SHELL : 6.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: POLY-ALA MODEL OF PDB CODE: 3GBW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM CITRIC ACID, 2000MM AMMONIUM REMARK 280 SULFATE, PH 3.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.95950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.75650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.75650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 131.93925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.75650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.75650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.97975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.75650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.75650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 131.93925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.75650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.75650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.97975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.95950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 358 REMARK 465 SER A 359 REMARK 465 LEU A 360 REMARK 465 ASP A 361 REMARK 465 ARG A 362 REMARK 465 PRO A 363 REMARK 465 ARG A 364 REMARK 465 CYS A 365 REMARK 465 CYS A 366 REMARK 465 LEU A 367 REMARK 465 ARG A 368 REMARK 465 GLY A 369 REMARK 465 GLY A 527 REMARK 465 HIS A 528 REMARK 465 HIS A 529 REMARK 465 HIS A 530 REMARK 465 HIS A 531 REMARK 465 HIS A 532 REMARK 465 HIS A 533 REMARK 465 MET B 358 REMARK 465 SER B 359 REMARK 465 LEU B 360 REMARK 465 ASP B 361 REMARK 465 ARG B 362 REMARK 465 PRO B 363 REMARK 465 ARG B 364 REMARK 465 CYS B 365 REMARK 465 CYS B 366 REMARK 465 LEU B 367 REMARK 465 ARG B 368 REMARK 465 GLY B 369 REMARK 465 GLY B 527 REMARK 465 HIS B 528 REMARK 465 HIS B 529 REMARK 465 HIS B 530 REMARK 465 HIS B 531 REMARK 465 HIS B 532 REMARK 465 HIS B 533 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 370 CG CD CE NZ REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 GLU A 455 CG CD OE1 OE2 REMARK 470 LYS A 481 CG CD CE NZ REMARK 470 ARG A 484 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 485 CG CD CE NZ REMARK 470 GLU A 526 CG CD OE1 OE2 REMARK 470 LYS B 370 CG CD CE NZ REMARK 470 LYS B 399 CG CD CE NZ REMARK 470 ASP B 417 CG OD1 OD2 REMARK 470 ARG B 450 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 481 CG CD CE NZ REMARK 470 ARG B 484 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 485 CG CD CE NZ REMARK 470 GLU B 526 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 383 OD2 ASP A 475 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 442 CB CYS A 442 SG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 392 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 392 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 392 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 438 -149.99 -142.57 REMARK 500 ASN A 509 17.21 52.31 REMARK 500 THR B 438 -145.33 -129.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10602A RELATED DB: TARGETDB DBREF 3NO8 A 361 525 UNP Q9BX70 BTBD2_HUMAN 361 525 DBREF 3NO8 B 361 525 UNP Q9BX70 BTBD2_HUMAN 361 525 SEQADV 3NO8 MET A 358 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 SER A 359 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 LEU A 360 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 MET A 483 UNP Q9BX70 LEU 483 CONFLICT SEQADV 3NO8 GLU A 526 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 GLY A 527 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 HIS A 528 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 HIS A 529 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 HIS A 530 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 HIS A 531 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 HIS A 532 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 HIS A 533 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 MET B 358 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 SER B 359 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 LEU B 360 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 MET B 483 UNP Q9BX70 LEU 483 CONFLICT SEQADV 3NO8 GLU B 526 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 GLY B 527 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 HIS B 528 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 HIS B 529 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 HIS B 530 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 HIS B 531 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 HIS B 532 UNP Q9BX70 EXPRESSION TAG SEQADV 3NO8 HIS B 533 UNP Q9BX70 EXPRESSION TAG SEQRES 1 A 176 MET SER LEU ASP ARG PRO ARG CYS CYS LEU ARG GLY LYS SEQRES 2 A 176 GLU CYS SER ILE ASN ARG PHE GLN GLN VAL GLU SER ARG SEQRES 3 A 176 TRP GLY TYR SER GLY THR SER ASP ARG ILE ARG PHE SER SEQRES 4 A 176 VAL ASN LYS ARG ILE PHE VAL VAL GLY PHE GLY LEU TYR SEQRES 5 A 176 GLY SER ILE HIS GLY PRO THR ASP TYR GLN VAL ASN ILE SEQRES 6 A 176 GLN ILE ILE HIS THR ASP SER ASN THR VAL LEU GLY GLN SEQRES 7 A 176 ASN ASP THR GLY PHE SER CYS ASP GLY SER ALA SER THR SEQRES 8 A 176 PHE ARG VAL MET PHE LYS GLU PRO VAL GLU VAL LEU PRO SEQRES 9 A 176 ASN VAL ASN TYR THR ALA CYS ALA THR LEU LYS GLY PRO SEQRES 10 A 176 ASP SER HIS TYR GLY THR LYS GLY MET ARG LYS VAL THR SEQRES 11 A 176 HIS GLU SER PRO THR THR GLY ALA LYS THR CYS PHE THR SEQRES 12 A 176 PHE CYS TYR ALA ALA GLY ASN ASN ASN GLY THR SER VAL SEQRES 13 A 176 GLU ASP GLY GLN ILE PRO GLU VAL ILE PHE TYR THR GLU SEQRES 14 A 176 GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 176 MET SER LEU ASP ARG PRO ARG CYS CYS LEU ARG GLY LYS SEQRES 2 B 176 GLU CYS SER ILE ASN ARG PHE GLN GLN VAL GLU SER ARG SEQRES 3 B 176 TRP GLY TYR SER GLY THR SER ASP ARG ILE ARG PHE SER SEQRES 4 B 176 VAL ASN LYS ARG ILE PHE VAL VAL GLY PHE GLY LEU TYR SEQRES 5 B 176 GLY SER ILE HIS GLY PRO THR ASP TYR GLN VAL ASN ILE SEQRES 6 B 176 GLN ILE ILE HIS THR ASP SER ASN THR VAL LEU GLY GLN SEQRES 7 B 176 ASN ASP THR GLY PHE SER CYS ASP GLY SER ALA SER THR SEQRES 8 B 176 PHE ARG VAL MET PHE LYS GLU PRO VAL GLU VAL LEU PRO SEQRES 9 B 176 ASN VAL ASN TYR THR ALA CYS ALA THR LEU LYS GLY PRO SEQRES 10 B 176 ASP SER HIS TYR GLY THR LYS GLY MET ARG LYS VAL THR SEQRES 11 B 176 HIS GLU SER PRO THR THR GLY ALA LYS THR CYS PHE THR SEQRES 12 B 176 PHE CYS TYR ALA ALA GLY ASN ASN ASN GLY THR SER VAL SEQRES 13 B 176 GLU ASP GLY GLN ILE PRO GLU VAL ILE PHE TYR THR GLU SEQRES 14 B 176 GLY HIS HIS HIS HIS HIS HIS HET GOL A 2 6 HET GOL A 3 6 HET GOL A 4 6 HET SO4 A 1 5 HET GOL B 1 6 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 6 SO4 O4 S 2- FORMUL 8 HOH *115(H2 O) SHEET 1 A 4 CYS A 372 ASN A 375 0 SHEET 2 A 4 GLU A 520 THR A 525 -1 O PHE A 523 N CYS A 372 SHEET 3 A 4 ILE A 401 TYR A 409 -1 N VAL A 404 O ILE A 522 SHEET 4 A 4 THR A 448 VAL A 459 -1 O VAL A 459 N ILE A 401 SHEET 1 B 2 GLN A 379 TRP A 384 0 SHEET 2 B 2 SER A 476 THR A 480 -1 O TYR A 478 N GLU A 381 SHEET 1 C 6 THR A 431 CYS A 442 0 SHEET 2 C 6 THR A 416 HIS A 426 -1 N HIS A 426 O THR A 431 SHEET 3 C 6 TYR A 465 LYS A 472 -1 O CYS A 468 N GLN A 423 SHEET 4 C 6 ASP A 391 VAL A 397 -1 N ASP A 391 O ALA A 469 SHEET 5 C 6 LYS A 496 CYS A 502 -1 O THR A 500 N SER A 396 SHEET 6 C 6 LYS A 485 GLU A 489 -1 N HIS A 488 O THR A 497 SHEET 1 D 4 CYS B 372 ASN B 375 0 SHEET 2 D 4 GLU B 520 THR B 525 -1 O PHE B 523 N CYS B 372 SHEET 3 D 4 ILE B 401 TYR B 409 -1 N VAL B 404 O ILE B 522 SHEET 4 D 4 THR B 448 VAL B 459 -1 O VAL B 459 N ILE B 401 SHEET 1 E 2 PHE B 377 TRP B 384 0 SHEET 2 E 2 SER B 476 GLY B 482 -1 O TYR B 478 N GLU B 381 SHEET 1 F 6 THR B 431 CYS B 442 0 SHEET 2 F 6 THR B 416 HIS B 426 -1 N VAL B 420 O THR B 438 SHEET 3 F 6 TYR B 465 LYS B 472 -1 O THR B 470 N ASN B 421 SHEET 4 F 6 ASP B 391 VAL B 397 -1 N ILE B 393 O ALA B 467 SHEET 5 F 6 LYS B 496 CYS B 502 -1 O THR B 500 N SER B 396 SHEET 6 F 6 LYS B 485 GLU B 489 -1 N VAL B 486 O PHE B 499 CISPEP 1 SER A 382 ARG A 383 0 0.38 CISPEP 2 GLY A 414 PRO A 415 0 0.41 CISPEP 3 SER B 382 ARG B 383 0 9.11 CISPEP 4 GLY B 414 PRO B 415 0 -18.93 SITE 1 AC1 5 MET A 483 ARG A 484 LYS A 485 HOH B 100 SITE 2 AC1 5 LYS B 454 SITE 1 AC2 5 HOH A 91 HOH A 115 SER A 490 THR A 493 SITE 2 AC2 5 THR A 525 SITE 1 AC3 7 HOH A 60 ILE A 374 ASN A 375 HIS A 426 SITE 2 AC3 7 SER A 429 THR A 431 LEU A 433 SITE 1 AC4 4 ASN A 421 THR A 470 LYS A 472 ARG B 383 SITE 1 AC5 5 HOH B 86 ILE B 374 ASN B 375 SER B 429 SITE 2 AC5 5 THR B 431 CRYST1 59.513 59.513 175.919 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016803 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005684 0.00000